Wall clock time and date at job start Tue Mar 31 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 6 6 N 1.46504 * 109.47016 * 184.99757 * 5 3 2 7 7 C 1.34772 * 120.00116 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99855 * 0.02562 * 7 6 5 9 9 C 1.50692 * 119.99910 * 180.02562 * 7 6 5 10 10 C 1.53008 * 109.47162 * 180.02562 * 9 7 6 11 11 N 1.46494 * 109.47372 * 180.02562 * 10 9 7 12 12 C 1.34948 * 126.03861 * 124.99951 * 11 10 9 13 13 C 1.35321 * 107.74726 * 179.97438 * 12 11 10 14 14 C 1.39873 * 107.91994 * 0.02562 * 13 12 11 15 15 N 1.30845 * 108.20206 * 359.74269 * 14 13 12 16 16 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 17 17 C 1.36933 * 120.00353 * 274.99951 * 16 3 2 18 18 H 1.08001 * 119.99702 * 0.02562 * 17 16 3 19 19 C 1.38814 * 120.00726 * 180.02562 * 17 16 3 20 20 N 1.31619 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00404 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46609 * 60.00231 * 21 19 17 23 23 H 1.48501 * 109.46769 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47169 * 300.00014 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.08996 * 109.46875 * 304.99826 * 5 3 2 31 31 H 1.09002 * 109.47117 * 65.00082 * 5 3 2 32 32 H 0.97001 * 119.99463 * 0.02562 * 6 5 3 33 33 H 1.09005 * 109.47234 * 299.99704 * 9 7 6 34 34 H 1.09004 * 109.47529 * 60.00294 * 9 7 6 35 35 H 1.08996 * 109.46669 * 300.00150 * 10 9 7 36 36 H 1.09004 * 109.46742 * 59.99710 * 10 9 7 37 37 H 1.07993 * 126.12308 * 359.95619 * 12 11 10 38 38 H 1.07995 * 126.03608 * 179.97438 * 13 12 11 39 39 H 1.07993 * 125.89682 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00176 * 95.00254 * 16 3 2 41 41 H 0.96997 * 120.00043 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 4.0631 2.8169 -0.0060 7 6 5.3857 3.0630 -0.0858 8 8 6.1635 2.1483 -0.2572 9 6 5.8982 4.4747 0.0379 10 6 7.4231 4.4766 -0.0879 11 7 7.9214 5.8489 0.0330 12 6 8.8509 6.2816 0.9104 13 6 9.0317 7.6061 0.7000 14 6 8.1832 7.9963 -0.3412 15 7 7.5209 6.9426 -0.7453 16 7 1.6524 2.0975 1.2517 17 6 0.4156 2.6735 1.3687 18 1 -0.2742 2.6446 0.5382 19 6 0.0485 3.2946 2.5546 20 7 0.8890 3.3295 3.5668 21 14 -1.6385 4.0810 2.7139 22 1 -2.6867 3.0492 2.5099 23 1 -1.7827 4.6730 4.0681 24 1 -1.7866 5.1464 1.6901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.9954 0.8312 0.6660 31 1 3.8499 1.0377 -1.0960 32 1 3.4410 3.5483 0.1315 33 1 5.4680 5.0882 -0.7538 34 1 5.6129 4.8812 1.0083 35 1 7.8536 3.8631 0.7035 36 1 7.7081 4.0703 -1.0584 37 1 9.3592 5.6789 1.6484 38 1 9.7106 8.2485 1.2411 39 1 8.0932 8.9939 -0.7446 40 1 2.2719 2.1232 1.9977 41 1 0.6327 3.7638 4.3954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481789372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:55 Heat of formation + Delta-G solvation = 40.888838 kcal Electronic energy + Delta-G solvation = -21411.246454 eV Core-core repulsion = 18134.956547 eV Total energy + Delta-G solvation = -3276.289907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19776 -39.50538 -36.81325 -34.32510 -33.75785 -32.41574 -30.65430 -29.90610 -29.58106 -27.82227 -24.82541 -23.52265 -22.38746 -21.18772 -20.70506 -20.22800 -19.66074 -17.66849 -17.28641 -16.38078 -15.90798 -15.67537 -15.27303 -14.66433 -14.36702 -14.16313 -13.93074 -13.36786 -13.32084 -13.17736 -12.92578 -12.80430 -12.59046 -12.29483 -12.14747 -11.52596 -11.40284 -10.99726 -10.90956 -10.78006 -10.70543 -10.48013 -10.24242 -10.07931 -9.75029 -9.57498 -9.50146 -8.99581 -8.71976 -8.68317 -7.08448 -5.85890 -3.15296 1.81588 2.38070 2.76939 2.81791 3.37441 3.42984 3.43856 3.52272 4.43321 4.50828 4.70059 4.75330 4.91560 5.08680 5.27710 5.37096 5.37941 5.41428 5.51683 5.60104 5.70362 5.76847 5.87770 5.91075 5.92579 5.92828 6.10909 6.38622 6.50063 6.53758 6.55866 6.56919 6.82772 6.90839 6.98083 7.21070 7.62044 7.62123 7.82770 8.31469 8.44401 9.43489 9.97889 10.33760 11.35939 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.003739 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.523422 B = 7485.932666 C = 8788.621342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.708 5.708 7 C 0.517 3.483 8 O -0.560 6.560 9 C -0.154 4.154 10 C 0.152 3.848 11 N -0.370 5.370 12 C 0.056 3.944 13 C -0.280 4.280 14 C 0.041 3.959 15 N -0.296 5.296 16 N -0.722 5.722 17 C -0.239 4.239 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 H 0.032 0.968 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.412 0.588 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.173 0.827 38 H 0.146 0.854 39 H 0.181 0.819 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 3.524 -6.559 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.359 5.359 7 C 0.302 3.698 8 O -0.440 6.440 9 C -0.194 4.194 10 C 0.030 3.970 11 N -0.153 5.153 12 C -0.091 4.091 13 C -0.309 4.309 14 C -0.145 4.145 15 N -0.118 5.118 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.734 3.266 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.249 0.751 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.190 0.810 38 H 0.163 0.837 39 H 0.198 0.802 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.200 2.345 -7.515 14.519 hybrid contribution -0.514 1.079 1.197 1.691 sum 11.686 3.424 -6.318 13.719 Atomic orbital electron populations 1.21771 0.95699 0.99664 1.03263 1.22069 0.97001 0.98372 1.00018 1.20569 0.89892 0.92850 0.91449 0.92829 1.21695 0.95701 0.82514 1.01121 1.45973 1.07037 1.11025 1.71842 1.20235 0.82791 0.90253 0.76521 1.90679 1.56078 1.46575 1.50632 1.21860 0.95648 0.95896 1.06030 1.21436 0.93799 0.76671 1.05071 1.48830 1.31269 1.08540 1.26624 1.22622 0.94184 0.96315 0.95956 1.21506 1.08811 0.95052 1.05560 1.23888 0.95590 0.98213 0.96768 1.77352 1.23354 0.93512 1.17538 1.42443 1.16788 1.65884 1.11268 1.19163 0.91971 1.27877 0.98028 0.90941 1.24729 0.98075 1.01485 0.96341 1.69645 1.35298 1.48850 1.04014 0.86331 0.84202 0.79241 0.76786 1.21241 1.21760 1.21268 0.94853 0.94106 0.89662 0.92532 0.93840 0.91772 0.91798 0.75114 0.87576 0.88088 0.87750 0.88909 0.80957 0.83673 0.80184 0.78127 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.16 2.93 2.59 -67.93 -0.18 2.76 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.71 -11.23 5.39 -60.29 -0.32 -11.56 16 7 C 0.52 7.88 7.83 -10.99 -0.09 7.79 16 8 O -0.56 -9.89 15.98 5.55 0.09 -9.80 16 9 C -0.15 -1.92 5.89 -27.88 -0.16 -2.09 16 10 C 0.15 1.74 5.80 -4.04 -0.02 1.72 16 11 N -0.37 -4.47 3.68 -61.37 -0.23 -4.70 16 12 C 0.06 0.56 11.45 -17.22 -0.20 0.37 16 13 C -0.28 -2.77 10.80 -40.01 -0.43 -3.20 16 14 C 0.04 0.45 12.03 -17.36 -0.21 0.25 16 15 N -0.30 -3.96 12.42 30.63 0.38 -3.58 16 16 N -0.72 -16.11 4.51 -53.43 -0.24 -16.36 16 17 C -0.24 -5.99 7.75 -15.06 -0.12 -6.11 16 18 H 0.07 1.78 7.32 -52.49 -0.38 1.39 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -26.46 13.06 55.49 0.72 -25.74 16 21 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.78 5.99 -51.93 -0.31 1.47 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.41 6.71 8.14 -40.82 -0.33 6.38 16 33 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.10 1.07 8.03 -51.93 -0.42 0.66 16 36 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.38 9.41 7.80 -40.82 -0.32 9.09 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -30.38 346.65 -7.12 -37.50 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -6.39 Total: 14.40 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.33 Total: -1.69 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.31 Total: -61.93 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.38 -7.12 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481789372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.387 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds