Wall clock time and date at job start Tue Mar 31 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46959 * 2 1 4 4 C 1.35360 * 126.38122 * 275.25940 * 3 2 1 5 5 C 1.41506 * 105.50172 * 180.12163 * 4 3 2 6 6 C 1.47710 * 126.51875 * 179.90345 * 5 4 3 7 7 O 1.21573 * 120.00016 * 359.70499 * 6 5 4 8 8 N 1.34777 * 119.99649 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99724 * 179.72300 * 8 6 5 10 10 C 1.52999 * 109.47192 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.46756 * 304.99967 * 10 9 8 12 12 C 1.52992 * 109.47260 * 64.99501 * 10 9 8 13 13 C 1.53001 * 109.47159 * 185.00359 * 10 9 8 14 14 N 1.46498 * 109.46893 * 174.99925 * 13 10 9 15 15 C 1.36942 * 119.99951 * 180.02562 * 14 13 10 16 16 H 1.07998 * 119.99876 * 359.97438 * 15 14 13 17 17 C 1.38803 * 120.00185 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00200 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46816 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47314 * 119.99585 * 19 17 15 22 22 H 1.48498 * 109.47120 * 240.00216 * 19 17 15 23 23 N 1.31813 * 106.95978 * 359.63256 * 5 4 3 24 24 N 1.28462 * 110.07268 * 0.23307 * 23 5 4 25 25 H 0.97003 * 124.87982 * 180.02562 * 24 23 5 26 26 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47199 * 299.99705 * 1 2 3 28 28 H 1.08992 * 109.47295 * 60.00605 * 1 2 3 29 29 H 1.09001 * 109.47374 * 239.99693 * 2 1 3 30 30 H 1.09004 * 109.46937 * 119.99563 * 2 1 3 31 31 H 1.08001 * 127.25333 * 0.02562 * 4 3 2 32 32 H 0.97000 * 120.00483 * 359.72732 * 8 6 5 33 33 H 1.09003 * 109.46699 * 299.99993 * 9 8 6 34 34 H 1.08993 * 109.47199 * 60.00006 * 9 8 6 35 35 H 1.08998 * 109.47686 * 300.00080 * 12 10 9 36 36 H 1.09002 * 109.47264 * 60.00572 * 12 10 9 37 37 H 1.09008 * 109.47188 * 179.97438 * 12 10 9 38 38 H 1.09003 * 109.46445 * 294.99286 * 13 10 9 39 39 H 1.08993 * 109.47285 * 54.99533 * 13 10 9 40 40 H 0.97003 * 120.00409 * 359.97438 * 14 13 10 41 41 H 0.97006 * 119.99995 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2057 2.2111 -1.0852 5 6 2.6927 3.4413 -0.5832 6 6 3.0416 4.6378 -1.3760 7 8 2.9236 4.6210 -2.5859 8 7 3.4960 5.7463 -0.7586 9 6 3.8478 6.9310 -1.5454 10 6 4.3324 8.0397 -0.6091 11 1 3.5739 8.2315 0.1500 12 6 5.6327 7.6029 0.0685 13 6 4.5810 9.3159 -1.4155 14 7 4.9296 10.4090 -0.5046 15 6 5.1967 11.6564 -1.0025 16 1 5.1508 11.8342 -2.0668 17 6 5.5264 12.6923 -0.1395 18 7 5.5819 12.4757 1.1576 19 14 5.8915 14.3937 -0.8187 20 1 5.7627 14.3741 -2.2980 21 1 4.9283 15.3707 -0.2505 22 1 7.2741 14.7885 -0.4480 23 7 2.7702 3.3184 0.7269 24 7 2.3882 2.1447 1.0829 25 1 2.3591 1.8246 1.9982 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.0144 1.9560 -2.1170 32 1 3.5901 5.7597 0.2068 33 1 4.6409 6.6774 -2.2488 34 1 2.9717 7.2757 -2.0945 35 1 5.4555 6.6938 0.6431 36 1 6.3912 7.4111 -0.6904 37 1 5.9782 8.3931 0.7353 38 1 5.4009 9.1499 -2.1144 39 1 3.6792 9.5776 -1.9688 40 1 4.9705 10.2494 0.4513 41 1 5.8120 13.1997 1.7609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482081596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:31 Heat of formation + Delta-G solvation = 27.967932 kcal Electronic energy + Delta-G solvation = -20898.628621 eV Core-core repulsion = 17621.778421 eV Total energy + Delta-G solvation = -3276.850199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.96494 -39.38837 -36.74098 -34.78276 -34.27664 -32.57753 -31.94690 -30.06179 -29.59192 -26.67072 -25.53229 -24.23192 -23.68203 -22.13684 -21.37097 -20.33769 -19.54972 -17.99333 -17.31427 -16.68987 -16.13350 -15.83438 -15.17823 -14.88480 -14.60100 -14.35051 -14.07560 -13.90061 -13.59579 -13.54532 -12.97325 -12.91417 -12.56264 -12.23998 -12.10178 -11.99075 -11.68972 -11.09353 -11.01217 -10.88633 -10.66604 -10.52542 -10.37828 -10.14628 -9.92082 -9.66454 -9.64460 -9.27508 -8.93847 -8.84688 -6.88330 -5.73832 -3.01963 1.38613 1.83072 2.52821 3.21981 3.38137 3.45924 3.51736 3.53951 4.15245 4.24151 4.46381 4.62505 4.74188 4.96446 5.05357 5.12836 5.25510 5.29176 5.36698 5.38796 5.46648 5.61331 5.64494 5.69831 5.88823 6.02268 6.05016 6.11184 6.17061 6.32175 6.45396 6.53578 6.66335 6.71381 6.83195 6.92695 7.42714 7.70016 7.74347 8.23026 8.45420 9.56637 10.14584 10.49356 11.49286 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.048937 B = 0.002447 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.030377 B =11442.157952 C =11735.108482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C 0.014 3.986 4 C -0.175 4.175 5 C -0.007 4.007 6 C 0.600 3.400 7 O -0.535 6.535 8 N -0.711 5.711 9 C 0.126 3.874 10 C -0.110 4.110 11 H 0.077 0.923 12 C -0.142 4.142 13 C 0.160 3.840 14 N -0.731 5.731 15 C -0.236 4.236 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 N -0.257 5.257 24 N -0.380 5.380 25 H 0.444 0.556 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.407 0.593 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.023 0.977 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 -27.751 0.885 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.203 4.203 5 C -0.168 4.168 6 C 0.383 3.617 7 O -0.410 6.410 8 N -0.362 5.362 9 C 0.002 3.998 10 C -0.130 4.130 11 H 0.095 0.905 12 C -0.199 4.199 13 C 0.032 3.968 14 N -0.376 5.376 15 C -0.367 4.367 16 H 0.089 0.911 17 C -0.212 4.212 18 N -0.584 5.584 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 N -0.093 5.093 24 N -0.094 5.094 25 H 0.288 0.712 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.180 0.820 32 H 0.242 0.758 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.218 0.782 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.145 -26.973 0.782 28.187 hybrid contribution 0.056 0.375 0.371 0.530 sum -8.089 -26.598 1.153 27.825 Atomic orbital electron populations 1.21790 0.93943 1.02317 1.02763 1.20124 0.96495 0.88627 1.04035 1.21455 1.05487 0.96901 0.87348 1.21510 1.06683 0.92281 0.99853 1.22005 1.07964 0.97017 0.89853 1.16880 0.77250 0.81209 0.86332 1.90797 1.54172 1.82921 1.13155 1.45929 1.65506 1.13197 1.11554 1.21475 1.00567 0.83768 0.93942 1.21551 0.98349 0.94896 0.98163 0.90488 1.21794 0.96798 1.00614 1.00725 1.20580 0.97351 0.86272 0.92568 1.42357 1.83698 1.05932 1.05580 1.19294 1.38555 0.86500 0.92396 0.91074 1.24742 1.02829 0.98246 0.95391 1.69673 1.55656 1.31769 1.01260 0.86102 0.77490 0.84598 0.77940 1.20536 1.21921 1.21925 1.73572 1.18077 1.02567 1.15115 1.43306 1.47632 1.08615 1.09871 0.71179 0.91691 0.92665 0.91779 0.88963 0.90622 0.82037 0.75796 0.91093 0.91093 0.93806 0.92817 0.91174 0.95929 0.96060 0.78199 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.89 37.16 0.37 -0.23 16 2 C -0.05 -0.22 6.49 -27.88 -0.18 -0.40 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -1.84 10.73 -39.36 -0.42 -2.26 16 5 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 6 C 0.60 8.91 7.82 -12.39 -0.10 8.81 16 7 O -0.54 -9.48 16.93 5.30 0.09 -9.39 16 8 N -0.71 -9.74 5.28 -61.29 -0.32 -10.06 16 9 C 0.13 1.86 5.06 -4.04 -0.02 1.84 16 10 C -0.11 -1.79 2.46 -90.62 -0.22 -2.02 16 11 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 12 C -0.14 -2.23 8.94 37.15 0.33 -1.89 16 13 C 0.16 3.27 5.65 -4.04 -0.02 3.24 16 14 N -0.73 -18.67 5.33 -59.91 -0.32 -18.98 16 15 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 18 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 19 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 23 N -0.26 -2.84 11.92 33.42 0.40 -2.44 16 24 N -0.38 -2.89 6.83 33.50 0.23 -2.66 16 25 H 0.44 1.76 8.96 -190.44 -1.71 0.05 16 26 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.41 5.05 7.38 -40.82 -0.30 4.75 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.58 7.18 -51.93 -0.37 0.21 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.26 7.18 -51.92 -0.37 0.89 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 10.20 6.85 -40.82 -0.28 9.92 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -34.43 347.69 -8.27 -42.71 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.65 Total: 7.12 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.64 Total: -1.45 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.71 Total: -61.94 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.43 -8.27 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482081596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.677 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds