Wall clock time and date at job start Tue Mar 31 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.46951 * 2 1 4 4 N 1.30448 * 125.99270 * 270.16698 * 3 2 1 5 5 N 1.39940 * 108.89958 * 180.26724 * 4 3 2 6 6 H 0.96993 * 125.75545 * 179.73959 * 5 4 3 7 7 C 1.34261 * 108.48755 * 359.73811 * 5 4 3 8 8 C 1.38040 * 107.42061 * 359.97438 * 7 5 4 9 9 C 1.47429 * 126.41366 * 179.97438 * 8 7 5 10 10 O 1.21607 * 119.99680 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00443 * 0.03252 * 9 8 7 12 12 C 1.46490 * 120.00384 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47559 * 179.97438 * 12 11 9 14 14 H 1.09008 * 109.46613 * 54.99525 * 13 12 11 15 15 C 1.53001 * 109.47108 * 295.00069 * 13 12 11 16 16 C 1.52996 * 109.47530 * 174.99686 * 13 12 11 17 17 N 1.46498 * 109.47059 * 184.99929 * 16 13 12 18 18 C 1.36943 * 119.99752 * 179.72430 * 17 16 13 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47213 * 60.00246 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99875 * 22 20 18 26 26 H 1.09001 * 109.47135 * 299.99934 * 1 2 3 27 27 H 1.08997 * 109.47267 * 60.00154 * 1 2 3 28 28 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47135 * 240.00066 * 2 1 3 30 30 H 1.08998 * 109.47048 * 120.00599 * 2 1 3 31 31 H 1.08002 * 126.28802 * 179.97438 * 7 5 4 32 32 H 0.97002 * 119.99300 * 359.97438 * 11 9 8 33 33 H 1.08998 * 109.47374 * 59.99359 * 12 11 9 34 34 H 1.09002 * 109.47263 * 299.99603 * 12 11 9 35 35 H 1.09001 * 109.46786 * 59.99727 * 15 13 12 36 36 H 1.09001 * 109.47309 * 179.97438 * 15 13 12 37 37 H 1.08995 * 109.46988 * 299.99895 * 15 13 12 38 38 H 1.09004 * 109.47066 * 65.00196 * 16 13 12 39 39 H 1.08994 * 109.46974 * 305.00344 * 16 13 12 40 40 H 0.97001 * 120.00384 * 0.02562 * 17 16 13 41 41 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2849 2.1446 -1.0554 5 7 2.7377 3.4032 -0.6442 6 1 2.9983 4.1310 -1.2299 7 6 2.7503 3.4334 0.6981 8 6 2.3085 2.2037 1.1433 9 6 2.1598 1.7835 2.5486 10 8 1.7584 0.6657 2.8097 11 7 2.4685 2.6382 3.5438 12 6 2.3202 2.2209 4.9402 13 6 2.7351 3.3690 5.8626 14 1 2.1614 4.2615 5.6123 15 6 4.2273 3.6546 5.6818 16 6 2.4630 2.9789 7.3167 17 7 2.7478 4.1201 8.1900 18 6 2.5702 4.0079 9.5432 19 1 2.2245 3.0766 9.9670 20 6 2.8345 5.0911 10.3701 21 7 3.2553 6.2262 9.8534 22 14 2.5930 4.9377 12.2160 23 1 3.4709 3.8619 12.7424 24 1 2.9407 6.2251 12.8694 25 1 1.1747 4.6045 12.5037 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.0510 4.2667 1.3159 32 1 2.7890 3.5298 3.3355 33 1 2.9548 1.3553 5.1301 34 1 1.2800 1.9579 5.1323 35 1 4.4211 3.9326 4.6458 36 1 4.5228 4.4729 6.3386 37 1 4.8009 2.7622 5.9319 38 1 3.1026 2.1409 7.5939 39 1 1.4178 2.6897 7.4258 40 1 3.0579 4.9567 7.8093 41 1 3.4403 6.9829 10.4312 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482118296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:58 Heat of formation + Delta-G solvation = 27.121979 kcal Electronic energy + Delta-G solvation = -21277.835661 eV Core-core repulsion = 18000.948778 eV Total energy + Delta-G solvation = -3276.886883 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = -0.70 seconds Orbital eigenvalues (eV) -41.69568 -39.21648 -36.76721 -34.65287 -34.10967 -32.56200 -30.76747 -30.54753 -29.78244 -26.51453 -25.36191 -24.22375 -23.31599 -22.24600 -20.45535 -20.18089 -19.56324 -18.60372 -17.12038 -16.43199 -15.83146 -15.59429 -15.07879 -14.83479 -14.55565 -14.24601 -14.03679 -13.87221 -13.60575 -13.19347 -13.00457 -12.59418 -12.51199 -12.28243 -12.04082 -11.66864 -11.39652 -11.06156 -10.97548 -10.89648 -10.69059 -10.56577 -10.41438 -10.09514 -9.86189 -9.78894 -9.64697 -9.19039 -8.87948 -8.85724 -6.92358 -5.77347 -3.05531 1.22438 1.93560 2.37806 3.27708 3.39925 3.44660 3.48878 3.49998 4.19102 4.33196 4.59492 4.82370 4.97465 5.08259 5.16355 5.23687 5.26180 5.34360 5.39118 5.46298 5.57885 5.81903 5.82901 5.97445 5.98616 6.02700 6.09264 6.12190 6.23786 6.26633 6.40075 6.53705 6.65193 6.76190 6.77912 6.87731 7.22717 7.58220 7.70173 8.30516 8.42119 9.53249 10.10685 10.45394 11.45699 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036875 B = 0.002760 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.132599 B =10142.583747 C =10664.706257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.139 3.861 4 N -0.301 5.301 5 N -0.462 5.462 6 H 0.444 0.556 7 C 0.104 3.896 8 C -0.284 4.284 9 C 0.590 3.410 10 O -0.541 6.541 11 N -0.724 5.724 12 C 0.129 3.871 13 C -0.111 4.111 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.936 5.936 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.186 0.814 32 H 0.395 0.605 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.023 0.977 39 H 0.021 0.979 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 -5.641 -22.574 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.030 4.030 4 N -0.123 5.123 5 N -0.167 5.167 6 H 0.288 0.712 7 C -0.049 4.049 8 C -0.299 4.299 9 C 0.377 3.623 10 O -0.419 6.419 11 N -0.375 5.375 12 C 0.005 3.995 13 C -0.130 4.130 14 H 0.094 0.906 15 C -0.198 4.198 16 C 0.032 3.968 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.585 5.585 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.203 0.797 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.218 0.782 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.901 -6.482 -23.468 24.363 hybrid contribution 0.386 1.400 1.434 2.041 sum -0.514 -5.082 -22.033 22.617 Atomic orbital electron populations 1.21618 0.93916 1.02147 1.01998 1.20137 0.96595 0.87977 1.04162 1.22502 0.94833 0.96968 0.88651 1.77170 1.21901 0.90715 1.22487 1.46108 1.51507 1.13567 1.05470 0.71173 1.23195 0.97120 0.98868 0.85723 1.20370 1.19181 0.95521 0.94817 1.17214 0.77083 0.84616 0.83401 1.90747 1.46737 1.20165 1.84230 1.45891 1.68134 1.16983 1.06497 1.21397 1.01765 0.97596 0.78722 1.21555 0.97349 0.97694 0.96378 0.90609 1.21788 0.95203 1.02652 1.00190 1.20576 0.97523 0.91681 0.87005 1.42334 1.80705 1.11155 1.03357 1.19205 1.37296 0.97324 0.83154 0.91187 1.24730 1.02289 0.95956 0.98062 1.69646 1.52141 1.02407 1.34256 0.86252 0.77873 0.76588 0.85394 1.21254 1.21722 1.21264 0.92063 0.93056 0.91842 0.90672 0.87947 0.79669 0.77038 0.91281 0.91287 0.94030 0.91214 0.92771 0.95962 0.96095 0.78239 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.05 -0.52 5.97 -27.89 -0.17 -0.69 16 3 C 0.14 1.59 6.52 -82.02 -0.53 1.06 16 4 N -0.30 -3.25 12.63 33.89 0.43 -2.82 16 5 N -0.46 -3.37 7.29 30.85 0.22 -3.15 16 6 H 0.44 1.61 8.96 -182.72 -1.64 -0.03 16 7 C 0.10 0.76 11.52 -16.56 -0.19 0.57 16 8 C -0.28 -3.11 6.13 -105.07 -0.64 -3.75 16 9 C 0.59 7.63 7.81 -12.52 -0.10 7.53 16 10 O -0.54 -8.67 14.92 5.27 0.08 -8.59 16 11 N -0.72 -8.19 5.27 -61.39 -0.32 -8.51 16 12 C 0.13 1.72 5.06 -4.05 -0.02 1.70 16 13 C -0.11 -1.64 2.46 -90.62 -0.22 -1.87 16 14 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 15 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 16 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 17 N -0.73 -18.09 5.33 -59.91 -0.32 -18.41 16 18 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.94 -27.96 13.06 55.49 0.72 -27.24 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.20 6.56 -51.93 -0.34 0.86 16 31 H 0.19 0.62 7.46 -52.49 -0.39 0.23 16 32 H 0.40 3.42 6.58 -40.82 -0.27 3.15 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 36 H 0.07 1.16 7.18 -51.93 -0.37 0.79 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.38 9.84 6.85 -40.82 -0.28 9.56 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -34.39 343.15 -7.92 -42.32 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.44 Total: 6.19 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.45 Total: -2.28 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.73 Total: -60.12 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.39 -7.92 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482118296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.439 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.70 seconds