Wall clock time and date at job start Tue Mar 31 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47272 * 2 1 4 4 C 1.53004 * 109.46755 * 120.00033 * 2 1 3 5 5 H 1.09000 * 109.46662 * 184.99634 * 4 2 1 6 6 C 1.52996 * 109.47336 * 304.99390 * 4 2 1 7 7 N 1.46498 * 109.47059 * 175.00083 * 6 4 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 4 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 6 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 6 11 11 C 1.50701 * 109.47355 * 180.02562 * 10 8 7 12 12 N 1.30499 * 125.64969 * 304.69240 * 11 10 8 13 13 C 1.34128 * 109.25402 * 179.89461 * 12 11 10 14 14 C 1.34670 * 108.01863 * 0.36987 * 13 12 11 15 15 N 1.35041 * 125.64611 * 125.00003 * 11 10 8 16 16 H 0.97004 * 126.40053 * 359.97438 * 15 11 10 17 17 N 1.46494 * 109.47171 * 65.00025 * 4 2 1 18 18 C 1.36934 * 120.00488 * 84.99750 * 17 4 2 19 19 H 1.08003 * 119.99785 * 359.97438 * 18 17 4 20 20 C 1.38817 * 120.00391 * 179.97438 * 18 17 4 21 21 N 1.31620 * 119.99922 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99672 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47285 * 89.99825 * 22 20 18 24 24 H 1.48501 * 109.46856 * 209.99992 * 22 20 18 25 25 H 1.48500 * 109.46930 * 329.99469 * 22 20 18 26 26 H 1.09011 * 109.46697 * 300.00196 * 1 2 3 27 27 H 1.08995 * 109.47011 * 59.99737 * 1 2 3 28 28 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46823 * 239.99457 * 2 1 3 30 30 H 1.08997 * 109.47446 * 60.00320 * 3 2 1 31 31 H 1.09011 * 109.46920 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47238 * 299.99814 * 3 2 1 33 33 H 1.09004 * 109.47066 * 55.00351 * 6 4 2 34 34 H 1.08994 * 109.46974 * 295.00498 * 6 4 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 7 6 4 36 36 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 37 37 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 38 38 H 1.07998 * 125.99008 * 180.11995 * 13 12 11 39 39 H 1.08002 * 126.58946 * 179.82041 * 14 13 12 40 40 H 0.97009 * 119.99912 * 264.99313 * 17 4 2 41 41 H 0.97005 * 119.99120 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1262 -0.6444 1.2952 6 6 1.4300 -0.0762 2.4954 7 7 1.8227 -0.8397 3.6824 8 6 1.4037 -0.4506 4.9029 9 8 0.6974 0.5286 5.0180 10 6 1.8128 -1.2323 6.1247 11 6 1.2160 -0.5941 7.3525 12 7 1.3648 0.6519 7.7107 13 6 0.6926 0.8676 8.8512 14 6 0.1117 -0.2908 9.2177 15 7 0.4433 -1.2183 8.2673 16 1 0.1739 -2.1501 8.2537 17 7 1.6523 -2.1328 1.1906 18 6 2.4344 -3.0301 0.5135 19 1 3.3368 -2.6970 0.0224 20 6 2.0674 -4.3677 0.4584 21 7 2.8188 -5.2300 -0.1929 22 14 0.5062 -4.9436 1.3073 23 1 -0.6352 -4.8482 0.3622 24 1 0.6712 -6.3534 1.7435 25 1 0.2416 -4.0869 2.4910 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.3434 -0.0735 2.4082 34 1 1.7897 0.9486 2.5870 35 1 2.3878 -1.6227 3.5905 36 1 1.4532 -2.2575 6.0372 37 1 2.8997 -1.2343 6.2076 38 1 0.6316 1.8048 9.3844 39 1 -0.4991 -0.4559 10.0930 40 1 0.8416 -2.4319 1.6315 41 1 2.5625 -6.1648 -0.2310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482561421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:44 Heat of formation + Delta-G solvation = 27.074685 kcal Electronic energy + Delta-G solvation = -22052.757452 eV Core-core repulsion = 18775.868518 eV Total energy + Delta-G solvation = -3276.888934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.09600 -39.38397 -37.44027 -33.79066 -33.31292 -32.54548 -32.07964 -30.83850 -28.29425 -26.79650 -26.72975 -23.80027 -22.26513 -21.65103 -21.10496 -20.05147 -18.79262 -18.11916 -17.75655 -16.71458 -15.93424 -15.59382 -14.96370 -14.67518 -14.20409 -14.18578 -13.80335 -13.73728 -13.63234 -13.16929 -12.89400 -12.84207 -12.77727 -12.48740 -12.12174 -11.54710 -11.24166 -11.16857 -11.01390 -10.69607 -10.52207 -10.18402 -10.07366 -9.97021 -9.85191 -9.66930 -9.62838 -9.00177 -8.67245 -8.47673 -7.37298 -5.86144 -3.22446 1.93128 2.86609 2.90517 3.12532 3.26282 3.31743 3.37376 3.64399 4.25671 4.49201 4.80441 5.03766 5.07698 5.15665 5.22889 5.28273 5.37202 5.40453 5.56156 5.60582 5.67591 5.72255 5.82496 5.99542 6.01792 6.05656 6.25570 6.28292 6.37808 6.52517 6.60476 6.67910 6.79114 6.86052 6.99230 7.22581 7.84276 7.90361 8.08569 8.32607 8.51446 9.10682 9.82780 10.02437 11.31962 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.004797 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.531214 B = 5835.462390 C = 7090.348299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.148 4.148 4 C 0.175 3.825 5 H 0.063 0.937 6 C 0.109 3.891 7 N -0.718 5.718 8 C 0.514 3.486 9 O -0.527 6.527 10 C -0.059 4.059 11 C 0.224 3.776 12 N -0.461 5.461 13 C -0.028 4.028 14 C -0.061 4.061 15 N -0.567 5.567 16 H 0.417 0.583 17 N -0.745 5.745 18 C -0.244 4.244 19 H 0.092 0.908 20 C 0.009 3.991 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.362 0.638 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 7.999 14.081 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.066 3.934 5 H 0.081 0.919 6 C -0.015 4.015 7 N -0.371 5.371 8 C 0.298 3.702 9 O -0.403 6.403 10 C -0.101 4.101 11 C -0.040 4.040 12 N -0.180 5.180 13 C -0.176 4.176 14 C -0.194 4.194 15 N -0.171 5.171 16 H 0.255 0.745 17 N -0.388 5.388 18 C -0.374 4.374 19 H 0.110 0.890 20 C -0.188 4.188 21 N -0.579 5.579 22 Si 0.711 3.289 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.185 0.815 39 H 0.193 0.807 40 H 0.195 0.805 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.712 9.219 13.612 16.854 hybrid contribution -1.595 -2.055 0.928 2.762 sum -5.307 7.164 14.540 17.056 Atomic orbital electron populations 1.21813 0.96081 1.01838 1.00306 1.21703 0.95760 0.94947 1.00917 1.21900 1.00775 0.96849 1.01058 1.20496 0.97841 0.84520 0.90577 0.91919 1.21852 1.00246 0.95112 0.84281 1.45964 1.53301 1.32171 1.05687 1.20018 0.80908 0.85220 0.84100 1.90740 1.36879 1.26524 1.86127 1.19968 1.03025 0.99244 0.87827 1.22389 0.98015 0.89519 0.94104 1.70257 1.22242 1.13275 1.12256 1.22377 1.01164 0.98353 0.95746 1.22702 1.08275 0.90596 0.97876 1.43250 1.40584 1.12800 1.20436 0.74505 1.42818 1.28205 1.03222 1.64541 1.19060 1.04557 0.88088 1.25697 0.89049 1.24646 0.97985 0.95967 1.00153 1.69697 1.38977 1.02848 1.46331 0.86629 0.84683 0.77903 0.79692 1.21138 1.21843 1.20433 0.93295 0.93792 0.92255 0.90266 0.92973 0.92950 0.93389 0.91490 0.91241 0.75533 0.87499 0.86180 0.81460 0.80736 0.80547 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.60 37.16 0.32 -1.92 16 2 C -0.11 -1.81 2.88 -90.62 -0.26 -2.07 16 3 C -0.15 -2.00 8.95 37.15 0.33 -1.67 16 4 C 0.18 3.04 2.22 -67.93 -0.15 2.89 16 5 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 6 C 0.11 1.74 4.53 -4.04 -0.02 1.73 16 7 N -0.72 -10.94 5.39 -60.30 -0.32 -11.26 16 8 C 0.51 8.01 7.82 -10.98 -0.09 7.93 16 9 O -0.53 -10.26 15.56 5.55 0.09 -10.18 16 10 C -0.06 -0.69 6.33 -29.03 -0.18 -0.87 16 11 C 0.22 2.99 6.95 -155.42 -1.08 1.91 16 12 N -0.46 -7.28 10.60 -10.82 -0.11 -7.39 16 13 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 14 C -0.06 -0.60 12.04 -16.56 -0.20 -0.80 16 15 N -0.57 -5.72 6.15 -10.23 -0.06 -5.79 16 16 H 0.42 2.78 8.96 -40.82 -0.37 2.41 16 17 N -0.74 -15.63 3.82 -53.43 -0.20 -15.83 16 18 C -0.24 -6.25 10.41 -15.06 -0.16 -6.41 16 19 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -27.73 13.97 55.49 0.78 -26.95 16 22 Si 0.88 20.76 27.74 -169.99 -4.71 16.04 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.06 6.52 56.52 0.37 -5.69 16 26 H 0.05 0.72 6.24 -51.92 -0.32 0.40 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.04 7.75 -51.93 -0.40 0.64 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.05 0.67 6.68 -51.93 -0.35 0.33 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.13 6.06 -51.93 -0.31 0.81 16 34 H 0.07 1.08 6.81 -51.93 -0.35 0.73 16 35 H 0.41 6.00 8.14 -40.82 -0.33 5.67 16 36 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.17 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.36 7.68 5.66 -40.82 -0.23 7.45 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -34.28 337.75 -7.32 -41.60 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -6.06 Total: 14.37 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.79 Total: 0.29 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: 0.07 Total: -67.22 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.71 Total: 16.04 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.28 -7.32 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482561421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.679 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds