Wall clock time and date at job start Tue Mar 31 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47272 * 2 1 4 4 C 1.53004 * 109.46755 * 120.00033 * 2 1 3 5 5 H 1.09000 * 109.46662 * 184.99634 * 4 2 1 6 6 C 1.52996 * 109.47336 * 304.99390 * 4 2 1 7 7 N 1.46498 * 109.47059 * 175.00083 * 6 4 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 4 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 6 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 6 11 11 C 1.50701 * 109.47355 * 180.02562 * 10 8 7 12 12 N 1.30499 * 125.64969 * 304.69240 * 11 10 8 13 13 C 1.34128 * 109.25402 * 179.89461 * 12 11 10 14 14 C 1.34670 * 108.01863 * 0.36987 * 13 12 11 15 15 N 1.35041 * 125.64611 * 125.00003 * 11 10 8 16 16 H 0.97004 * 126.40053 * 359.97438 * 15 11 10 17 17 N 1.46494 * 109.47171 * 65.00025 * 4 2 1 18 18 C 1.36934 * 120.00488 * 84.99750 * 17 4 2 19 19 H 1.08003 * 119.99785 * 359.97438 * 18 17 4 20 20 C 1.38817 * 120.00391 * 179.97438 * 18 17 4 21 21 N 1.31620 * 119.99922 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99672 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47285 * 89.99825 * 22 20 18 24 24 H 1.48501 * 109.46856 * 209.99992 * 22 20 18 25 25 H 1.48500 * 109.46930 * 329.99469 * 22 20 18 26 26 H 1.09011 * 109.46697 * 300.00196 * 1 2 3 27 27 H 1.08995 * 109.47011 * 59.99737 * 1 2 3 28 28 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46823 * 239.99457 * 2 1 3 30 30 H 1.08997 * 109.47446 * 60.00320 * 3 2 1 31 31 H 1.09011 * 109.46920 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47238 * 299.99814 * 3 2 1 33 33 H 1.09004 * 109.47066 * 55.00351 * 6 4 2 34 34 H 1.08994 * 109.46974 * 295.00498 * 6 4 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 7 6 4 36 36 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 37 37 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 38 38 H 1.07998 * 125.99008 * 180.11995 * 13 12 11 39 39 H 1.08002 * 126.58946 * 179.82041 * 14 13 12 40 40 H 0.97009 * 119.99912 * 264.99313 * 17 4 2 41 41 H 0.97005 * 119.99120 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1262 -0.6444 1.2952 6 6 1.4300 -0.0762 2.4954 7 7 1.8227 -0.8397 3.6824 8 6 1.4037 -0.4506 4.9029 9 8 0.6974 0.5286 5.0180 10 6 1.8128 -1.2323 6.1247 11 6 1.2160 -0.5941 7.3525 12 7 1.3648 0.6519 7.7107 13 6 0.6926 0.8676 8.8512 14 6 0.1117 -0.2908 9.2177 15 7 0.4433 -1.2183 8.2673 16 1 0.1739 -2.1501 8.2537 17 7 1.6523 -2.1328 1.1906 18 6 2.4344 -3.0301 0.5135 19 1 3.3368 -2.6970 0.0224 20 6 2.0674 -4.3677 0.4584 21 7 2.8188 -5.2300 -0.1929 22 14 0.5062 -4.9436 1.3073 23 1 -0.6352 -4.8482 0.3622 24 1 0.6712 -6.3534 1.7435 25 1 0.2416 -4.0869 2.4910 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.3434 -0.0735 2.4082 34 1 1.7897 0.9486 2.5870 35 1 2.3878 -1.6227 3.5905 36 1 1.4532 -2.2575 6.0372 37 1 2.8997 -1.2343 6.2076 38 1 0.6316 1.8048 9.3844 39 1 -0.4991 -0.4559 10.0930 40 1 0.8416 -2.4319 1.6315 41 1 2.5625 -6.1648 -0.2310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482561421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:41 Heat of formation + Delta-G solvation = 1.710383 kcal Electronic energy + Delta-G solvation = -22053.857330 eV Core-core repulsion = 18775.868518 eV Total energy + Delta-G solvation = -3277.988812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -42.94751 -40.64819 -38.86705 -35.18305 -35.03457 -33.42728 -33.05301 -32.67192 -29.51483 -27.98479 -27.91026 -25.42278 -23.88132 -22.49049 -22.14131 -21.14392 -20.15518 -19.81515 -18.82014 -17.91469 -17.28302 -16.90838 -16.38940 -15.82656 -15.66603 -15.25156 -15.02542 -14.86556 -14.77781 -14.62030 -14.31016 -14.07816 -14.00851 -13.82577 -13.13000 -12.99234 -12.84145 -12.65767 -12.52040 -12.19918 -12.10135 -11.75619 -11.61928 -11.22817 -11.00728 -10.98167 -10.88483 -10.80107 -9.95783 -9.32446 -9.26953 -7.96644 -5.29783 1.10328 1.38709 1.43550 1.49817 1.70853 2.00468 2.26524 2.51705 2.58658 3.35357 3.39507 3.57723 3.88132 4.03748 4.05277 4.22204 4.30682 4.39222 4.42982 4.45548 4.50063 4.60496 4.73939 4.79893 4.87806 4.93051 5.09496 5.15283 5.17202 5.18882 5.31921 5.48496 5.55598 5.66948 5.85296 5.85589 6.26280 6.51313 6.65584 7.12460 7.22738 7.32021 7.86803 8.06894 9.24821 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.004797 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.531214 B = 5835.462390 C = 7090.348299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.177 3.823 5 H 0.057 0.943 6 C 0.119 3.881 7 N -0.716 5.716 8 C 0.513 3.487 9 O -0.569 6.569 10 C -0.053 4.053 11 C 0.201 3.799 12 N -0.512 5.512 13 C -0.068 4.068 14 C -0.037 4.037 15 N -0.556 5.556 16 H 0.434 0.566 17 N -0.741 5.741 18 C -0.218 4.218 19 H 0.060 0.940 20 C -0.057 4.057 21 N -0.984 5.984 22 Si 0.945 3.055 23 H -0.291 1.291 24 H -0.299 1.299 25 H -0.246 1.246 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.412 0.588 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.179 0.821 39 H 0.217 0.783 40 H 0.364 0.636 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 8.397 16.079 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.068 3.932 5 H 0.075 0.925 6 C -0.005 4.005 7 N -0.369 5.369 8 C 0.299 3.701 9 O -0.447 6.447 10 C -0.094 4.094 11 C -0.064 4.064 12 N -0.232 5.232 13 C -0.215 4.215 14 C -0.171 4.171 15 N -0.161 5.161 16 H 0.275 0.725 17 N -0.385 5.385 18 C -0.349 4.349 19 H 0.078 0.922 20 C -0.248 4.248 21 N -0.634 5.634 22 Si 0.774 3.226 23 H -0.218 1.218 24 H -0.226 1.226 25 H -0.171 1.171 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.196 0.804 39 H 0.234 0.766 40 H 0.197 0.803 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.155 9.646 15.634 19.080 hybrid contribution -1.103 -2.067 0.299 2.362 sum -6.257 7.579 15.933 18.721 Atomic orbital electron populations 1.21774 0.95313 1.00846 1.01692 1.21598 0.96383 0.96372 0.98737 1.21829 1.00982 0.94803 1.02244 1.20611 0.97680 0.82769 0.92100 0.92480 1.21681 0.99753 0.95367 0.83743 1.45967 1.53194 1.32123 1.05614 1.20650 0.79827 0.84797 0.84868 1.90721 1.38833 1.28475 1.86715 1.20030 1.04173 0.99887 0.85347 1.22547 0.99192 0.89491 0.95158 1.70159 1.23983 1.15064 1.13983 1.22798 1.02578 1.00254 0.95895 1.23318 1.06420 0.89348 0.98041 1.43238 1.39481 1.13693 1.19641 0.72477 1.42720 1.27649 1.04148 1.63935 1.18959 1.03364 0.88626 1.23919 0.92185 1.25335 1.01434 0.96238 1.01800 1.69874 1.41452 1.03013 1.49098 0.85563 0.80250 0.77305 0.79510 1.21825 1.22625 1.17061 0.92111 0.92250 0.94369 0.93055 0.91982 0.92642 0.91991 0.91912 0.90500 0.75095 0.84307 0.84375 0.80350 0.76608 0.80257 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.60 71.98 0.62 -3.51 16 2 C -0.11 -3.44 2.88 -10.79 -0.03 -3.48 16 3 C -0.14 -3.54 8.95 71.98 0.64 -2.89 16 4 C 0.18 5.96 2.22 44.99 0.10 6.06 16 5 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 6 C 0.12 3.60 4.53 86.38 0.39 3.99 16 7 N -0.72 -20.49 5.39 -463.07 -2.49 -22.99 16 8 C 0.51 15.12 7.82 87.66 0.69 15.81 16 9 O -0.57 -21.64 15.56 -3.04 -0.05 -21.69 16 10 C -0.05 -1.12 6.33 29.10 0.18 -0.93 16 11 C 0.20 4.99 6.95 138.13 0.96 5.95 16 12 N -0.51 -15.78 10.60 -188.13 -1.99 -17.77 16 13 C -0.07 -1.62 11.87 83.52 0.99 -0.63 16 14 C -0.04 -0.61 12.04 83.09 1.00 0.39 16 15 N -0.56 -9.59 6.15 -186.27 -1.15 -10.74 16 16 H 0.43 4.22 8.96 -92.71 -0.83 3.39 16 17 N -0.74 -30.43 3.82 -322.95 -1.23 -31.66 16 18 C -0.22 -11.24 10.41 84.04 0.87 -10.36 16 19 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 20 C -0.06 -3.10 5.50 84.86 0.47 -2.64 16 21 N -0.98 -60.01 13.97 21.65 0.30 -59.70 16 22 Si 0.95 42.54 27.74 68.60 1.90 44.44 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.25 -9.65 6.52 99.48 0.65 -9.00 16 26 H 0.06 1.66 6.24 -2.38 -0.01 1.65 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.28 7.75 -2.39 -0.02 1.26 16 29 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.06 1.45 6.68 -2.39 -0.02 1.44 16 31 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 1.99 6.06 -2.38 -0.01 1.98 16 34 H 0.08 2.25 6.81 -2.39 -0.02 2.24 16 35 H 0.41 11.28 8.14 -92.71 -0.75 10.52 16 36 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.22 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.36 14.74 5.66 -92.70 -0.52 14.22 16 41 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -76.38 337.75 1.07 -75.31 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -1.11 Total: 37.04 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.89 Total: 7.76 kcal Atomic # 7 Polarization: -136.29 SS G_CDS: -6.56 Total: -142.86 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.90 Total: 44.44 kcal Total: -76.38 1.07 -75.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482561421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.023 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds