Wall clock time and date at job start Tue Mar 31 2020 01:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47052 * 2 1 4 4 C 1.50702 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.35371 * 126.38375 * 85.00002 * 4 3 2 6 6 C 1.41496 * 105.50187 * 180.02562 * 5 4 3 7 7 C 1.47706 * 126.51838 * 180.02562 * 6 5 4 8 8 O 1.21575 * 120.00205 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00380 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00340 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46801 * 325.00230 * 10 9 7 12 12 C 1.52995 * 109.47131 * 84.99614 * 10 9 7 13 13 C 1.53002 * 109.47177 * 205.00092 * 10 9 7 14 14 N 1.46502 * 109.47293 * 54.99915 * 13 10 9 15 15 C 1.36935 * 120.00013 * 180.02562 * 14 13 10 16 16 H 1.07994 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.38807 * 119.99808 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00293 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99919 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47158 * 89.99759 * 19 17 15 21 21 H 1.48503 * 109.47051 * 210.00246 * 19 17 15 22 22 H 1.48507 * 109.46808 * 329.99986 * 19 17 15 23 23 N 1.31814 * 106.96607 * 359.97438 * 6 5 4 24 24 N 1.28468 * 110.07177 * 0.02562 * 23 6 5 25 25 H 0.96995 * 124.88389 * 179.97438 * 24 23 6 26 26 H 1.08998 * 109.47441 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47409 * 300.00291 * 1 2 3 28 28 H 1.09003 * 109.46595 * 59.99939 * 1 2 3 29 29 H 1.08994 * 109.47409 * 239.99709 * 2 1 3 30 30 H 1.08998 * 109.46699 * 119.99602 * 2 1 3 31 31 H 1.09003 * 109.47116 * 59.99839 * 3 2 1 32 32 H 1.08996 * 109.47636 * 299.99852 * 3 2 1 33 33 H 1.08002 * 127.24364 * 0.02562 * 5 4 3 34 34 H 0.96998 * 119.99970 * 359.97438 * 9 7 6 35 35 H 1.08995 * 109.47292 * 300.00174 * 12 10 9 36 36 H 1.09005 * 109.46775 * 60.00600 * 12 10 9 37 37 H 1.09002 * 109.47351 * 180.02562 * 12 10 9 38 38 H 1.08997 * 109.47032 * 175.00156 * 13 10 9 39 39 H 1.09000 * 109.46873 * 295.00102 * 13 10 9 40 40 H 0.97004 * 119.99613 * 0.02562 * 14 13 10 41 41 H 0.96997 * 120.00244 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3505 1.3474 -1.0847 6 6 5.6723 1.3908 -0.5816 7 6 6.9170 1.3216 -1.3739 8 8 6.8624 1.2160 -2.5838 9 7 8.1133 1.3746 -0.7555 10 6 9.3478 1.3054 -1.5412 11 1 9.2003 0.6399 -2.3918 12 6 9.7108 2.7038 -2.0449 13 6 10.4811 0.7690 -0.6644 14 7 10.0841 -0.5171 -0.0859 15 6 10.9436 -1.1908 0.7402 16 1 11.9144 -0.7743 0.9649 17 6 10.5672 -2.4091 1.2887 18 7 9.3843 -2.9169 1.0145 19 14 11.7400 -3.3285 2.4151 20 1 11.5098 -2.9067 3.8202 21 1 11.5022 -4.7891 2.2914 22 1 13.1406 -3.0206 2.0290 23 7 5.5817 1.5059 0.7283 24 7 4.3476 1.5372 1.0839 25 1 4.0358 1.6172 1.9989 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 4.0465 1.2573 -2.1171 34 1 8.1570 1.4585 0.2099 35 1 8.9035 3.0859 -2.6695 36 1 9.8584 3.3693 -1.1943 37 1 10.6291 2.6523 -2.6299 38 1 11.3767 0.6336 -1.2707 39 1 10.6883 1.4790 0.1362 40 1 9.2123 -0.8913 -0.2880 41 1 9.1211 -3.7681 1.3981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483254111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:54 Heat of formation + Delta-G solvation = 3.317938 kcal Electronic energy + Delta-G solvation = -21535.403111 eV Core-core repulsion = 18257.484007 eV Total energy + Delta-G solvation = -3277.919103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.69486 -40.60663 -37.68354 -36.23545 -35.45947 -33.42514 -32.66236 -31.93799 -31.22778 -27.45076 -27.35984 -25.54257 -24.40220 -22.87870 -21.95719 -21.92250 -21.09759 -19.21711 -18.68965 -17.96388 -17.20550 -16.82657 -16.62474 -15.92681 -15.70372 -15.49507 -15.15317 -15.07639 -14.79451 -14.57801 -14.04737 -13.88415 -13.64867 -13.52339 -13.07735 -13.03489 -12.78039 -12.65866 -12.45329 -12.15470 -12.12028 -11.92689 -11.86340 -11.70822 -11.53293 -11.23372 -10.95823 -10.47871 -10.02688 -9.94447 -9.01961 -7.94012 -5.24425 0.52523 1.11009 1.46967 1.49208 1.57697 1.88768 2.26094 2.40444 2.56041 3.38319 3.41118 3.66174 3.79903 3.98030 4.04252 4.17713 4.27003 4.30323 4.46914 4.50316 4.56932 4.70162 4.80678 4.84580 4.86019 4.93442 4.95676 4.99133 5.11317 5.24627 5.30734 5.32207 5.36332 5.48124 5.49678 5.55277 6.11504 6.25788 6.48274 6.87821 7.17593 7.32594 8.06444 8.30294 9.29244 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014681 B = 0.004149 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.728612 B = 6746.643141 C = 8178.277653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.043 4.043 4 C 0.037 3.963 5 C -0.199 4.199 6 C -0.037 4.037 7 C 0.598 3.402 8 O -0.573 6.573 9 N -0.695 5.695 10 C 0.137 3.863 11 H 0.064 0.936 12 C -0.145 4.145 13 C 0.145 3.855 14 N -0.745 5.745 15 C -0.244 4.244 16 H 0.081 0.919 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.977 3.023 20 H -0.286 1.286 21 H -0.298 1.298 22 H -0.268 1.268 23 N -0.271 5.271 24 N -0.364 5.364 25 H 0.459 0.541 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.163 0.837 34 H 0.409 0.591 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.372 0.628 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.513 13.081 -0.239 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.082 4.082 4 C -0.090 4.090 5 C -0.227 4.227 6 C -0.196 4.196 7 C 0.384 3.616 8 O -0.452 6.452 9 N -0.345 5.345 10 C 0.033 3.967 11 H 0.083 0.917 12 C -0.204 4.204 13 C 0.018 3.982 14 N -0.388 5.388 15 C -0.376 4.376 16 H 0.099 0.901 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.805 3.195 20 H -0.213 1.213 21 H -0.225 1.225 22 H -0.192 1.192 23 N -0.108 5.108 24 N -0.081 5.081 25 H 0.307 0.693 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.181 0.819 34 H 0.245 0.755 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.204 0.796 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.643 13.081 -0.096 20.392 hybrid contribution -0.140 -1.120 0.632 1.294 sum -15.783 11.960 0.535 19.810 Atomic orbital electron populations 1.21745 0.93806 1.02198 1.02833 1.21540 0.97138 0.95421 1.02066 1.20372 0.83203 0.98518 1.06065 1.21873 0.96486 1.04609 0.86030 1.21681 0.89953 1.10162 1.00948 1.21868 0.95367 1.11832 0.90546 1.17217 0.82604 0.75603 0.86206 1.90713 1.87462 1.52521 1.14470 1.45863 1.04880 1.72232 1.11489 1.21227 0.83122 0.98506 0.93880 0.91746 1.22009 1.02350 0.94244 1.01794 1.21155 0.94979 0.87052 0.94982 1.42568 1.18409 1.21104 1.56743 1.19668 0.97595 1.00792 1.19532 0.90099 1.25615 0.98730 0.99267 1.03269 1.69863 1.21797 1.20397 1.50044 0.85096 0.78648 0.77111 0.78600 1.21295 1.22512 1.19225 1.73550 1.03215 1.19478 1.14593 1.43409 1.02084 1.51662 1.10936 0.69274 0.92745 0.91483 0.91729 0.92659 0.92573 0.87808 0.87564 0.81897 0.75532 0.92803 0.91051 0.89549 0.93765 0.94306 0.79585 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 3 C -0.04 -0.50 5.77 29.85 0.17 -0.32 16 4 C 0.04 0.76 6.48 41.40 0.27 1.02 16 5 C -0.20 -5.64 10.73 22.41 0.24 -5.40 16 6 C -0.04 -1.27 7.13 42.45 0.30 -0.96 16 7 C 0.60 23.62 7.79 86.75 0.68 24.30 16 8 O -0.57 -25.16 16.59 -3.95 -0.07 -25.22 16 9 N -0.69 -26.17 4.51 -445.53 -2.01 -28.18 16 10 C 0.14 4.99 2.73 44.99 0.12 5.11 16 11 H 0.06 2.65 7.58 -2.38 -0.02 2.64 16 12 C -0.15 -4.07 9.48 71.98 0.68 -3.39 16 13 C 0.14 5.84 5.82 86.38 0.50 6.34 16 14 N -0.75 -38.94 5.43 -343.46 -1.87 -40.80 16 15 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 17 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 18 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 19 Si 0.98 46.79 29.55 68.60 2.03 48.81 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 N -0.27 -8.48 11.92 -48.18 -0.57 -9.05 16 24 N -0.36 -7.97 6.83 -47.92 -0.33 -8.29 16 25 H 0.46 6.28 8.96 -220.00 -1.97 4.31 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.41 15.43 8.33 -92.71 -0.77 14.66 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.37 21.38 7.33 -92.71 -0.68 20.70 16 41 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -75.41 350.58 0.26 -75.15 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: -2.37 Total: 40.99 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.17 Total: 7.55 kcal Atomic # 7 Polarization: -142.79 SS G_CDS: -4.50 Total: -147.29 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.07 Total: -25.22 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.41 0.26 -75.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483254111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.471 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds