Wall clock time and date at job start Tue Mar 31 2020 01:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47370 * 2 1 4 4 C 1.35366 * 126.38724 * 275.29213 * 3 2 1 5 5 C 1.41498 * 105.50336 * 180.08661 * 4 3 2 6 6 C 1.47715 * 126.51672 * 179.90266 * 5 4 3 7 7 O 1.21571 * 119.99731 * 359.71150 * 6 5 4 8 8 N 1.34774 * 120.00132 * 179.71507 * 6 5 4 9 9 C 1.46497 * 120.00383 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46725 * 324.99787 * 9 8 6 11 11 C 1.52992 * 109.47081 * 84.99495 * 9 8 6 12 12 C 1.52997 * 109.47188 * 204.99951 * 9 8 6 13 13 H 1.09002 * 109.47153 * 299.99573 * 12 9 8 14 14 C 1.53000 * 109.47060 * 59.99892 * 12 9 8 15 15 N 1.46500 * 109.47007 * 179.97438 * 12 9 8 16 16 C 1.36931 * 119.99971 * 154.99885 * 15 12 9 17 17 H 1.08005 * 120.00425 * 359.97438 * 16 15 12 18 18 C 1.38812 * 120.00390 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99556 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00553 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47166 * 89.99808 * 20 18 16 22 22 H 1.48501 * 109.47423 * 210.00188 * 20 18 16 23 23 H 1.48508 * 109.46891 * 329.99990 * 20 18 16 24 24 N 1.31807 * 106.96343 * 359.64549 * 5 4 3 25 25 N 1.28469 * 110.07466 * 0.21789 * 24 5 4 26 26 H 0.97003 * 124.88266 * 179.97438 * 25 24 5 27 27 H 1.08995 * 109.46861 * 300.00348 * 1 2 3 28 28 H 1.09001 * 109.46864 * 59.99941 * 1 2 3 29 29 H 1.08995 * 109.47165 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47419 * 239.99659 * 2 1 3 31 31 H 1.09001 * 109.46864 * 120.00059 * 2 1 3 32 32 H 1.08000 * 127.24720 * 359.97438 * 4 3 2 33 33 H 0.97004 * 119.99693 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47103 * 60.00523 * 11 9 8 35 35 H 1.09001 * 109.47066 * 180.02562 * 11 9 8 36 36 H 1.08996 * 109.47747 * 300.00111 * 11 9 8 37 37 H 1.09004 * 109.46724 * 180.02562 * 14 12 9 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 12 9 39 39 H 1.08992 * 109.47399 * 59.99823 * 14 12 9 40 40 H 0.97004 * 120.00223 * 334.99863 * 15 12 9 41 41 H 0.96997 * 119.99679 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2054 2.2114 -1.0851 5 6 2.6919 3.4416 -0.5830 6 6 3.0402 4.6384 -1.3757 7 8 2.9219 4.6217 -2.5855 8 7 3.4892 5.7487 -0.7578 9 6 3.8341 6.9359 -1.5439 10 1 4.2641 6.6281 -2.4970 11 6 2.5729 7.7640 -1.7970 12 6 4.8522 7.7794 -0.7738 13 1 4.4222 8.0871 0.1794 14 6 6.1134 6.9511 -0.5207 15 7 5.1975 8.9662 -1.5602 16 6 5.6538 10.0944 -0.9325 17 1 5.7587 10.1095 0.1423 18 6 5.9805 11.2192 -1.6775 19 7 5.8522 11.2010 -2.9874 20 14 6.6036 12.7580 -0.8214 21 1 8.0840 12.7020 -0.7180 22 1 6.2072 13.9555 -1.6051 23 1 6.0151 12.8400 0.5396 24 7 2.7699 3.3184 0.7270 25 7 2.3883 2.1445 1.0830 26 1 2.3604 1.8241 1.9982 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0142 1.9562 -2.1169 33 1 3.5833 5.7621 0.2076 34 1 2.1429 8.0718 -0.8438 35 1 2.8294 8.6471 -2.3822 36 1 1.8476 7.1632 -2.3456 37 1 6.8385 7.5519 0.0283 38 1 5.8568 6.0678 0.0642 39 1 6.5433 6.6433 -1.4738 40 1 5.1030 8.9528 -2.5255 41 1 6.0802 11.9871 -3.5079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485125038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:57 Heat of formation + Delta-G solvation = 10.033875 kcal Electronic energy + Delta-G solvation = -21571.455200 eV Core-core repulsion = 18293.827321 eV Total energy + Delta-G solvation = -3277.627879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.69648 -40.71874 -38.23902 -35.63574 -35.17694 -33.63849 -32.84621 -31.04493 -30.18020 -30.08417 -25.92287 -25.70802 -24.63321 -23.67396 -22.03805 -21.54467 -20.95472 -19.36643 -18.62314 -17.99229 -17.08762 -16.82126 -16.47382 -15.77578 -15.50085 -15.32237 -15.22707 -14.91995 -14.75795 -14.61615 -14.20257 -14.07906 -13.49520 -13.31964 -13.17626 -12.91880 -12.74554 -12.59845 -12.48905 -12.27501 -12.14007 -12.08060 -11.74131 -11.71926 -11.48506 -11.22677 -10.97534 -10.48729 -10.07906 -9.95187 -9.00812 -7.90581 -5.19760 0.50514 1.11672 1.49615 1.51129 1.59328 1.85022 2.21240 2.35815 2.60706 3.36548 3.43220 3.69544 3.77704 3.99290 4.05312 4.19942 4.32679 4.38155 4.44043 4.54488 4.58495 4.71291 4.78173 4.83182 4.88616 4.94854 5.04414 5.09974 5.16349 5.22329 5.29952 5.31523 5.42278 5.47984 5.50697 5.58120 6.11034 6.29994 6.48213 6.87749 7.17348 7.36512 8.08982 8.33568 9.32927 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.045842 B = 0.002989 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.647900 B = 9366.327849 C = 9617.277705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.037 3.963 4 C -0.201 4.201 5 C -0.033 4.033 6 C 0.599 3.401 7 O -0.573 6.573 8 N -0.693 5.693 9 C 0.149 3.851 10 H 0.064 0.936 11 C -0.143 4.143 12 C 0.170 3.830 13 H 0.060 0.940 14 C -0.154 4.154 15 N -0.729 5.729 16 C -0.232 4.232 17 H 0.079 0.921 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.972 3.028 21 H -0.290 1.290 22 H -0.299 1.299 23 H -0.268 1.268 24 N -0.266 5.266 25 N -0.361 5.361 26 H 0.462 0.538 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.159 0.841 33 H 0.414 0.586 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.373 0.627 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 -25.455 11.558 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.089 4.089 4 C -0.229 4.229 5 C -0.192 4.192 6 C 0.385 3.615 7 O -0.450 6.450 8 N -0.344 5.344 9 C 0.043 3.957 10 H 0.083 0.917 11 C -0.201 4.201 12 C 0.061 3.939 13 H 0.078 0.922 14 C -0.214 4.214 15 N -0.369 5.369 16 C -0.364 4.364 17 H 0.097 0.903 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.801 3.199 21 H -0.217 1.217 22 H -0.225 1.225 23 H -0.192 1.192 24 N -0.103 5.103 25 N -0.079 5.079 26 H 0.310 0.690 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.177 0.823 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.205 0.795 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.138 -24.700 11.779 29.182 hybrid contribution 0.335 0.761 -0.304 0.885 sum -9.802 -23.939 11.475 28.299 Atomic orbital electron populations 1.21786 0.93696 1.03215 1.02025 1.20294 0.96494 0.86309 1.05858 1.21860 1.03144 0.97813 0.86126 1.21678 1.08007 0.92329 1.00914 1.21715 1.10141 0.96780 0.90609 1.17247 0.76386 0.81756 0.86158 1.90767 1.55542 1.83800 1.14919 1.45724 1.65255 1.11942 1.11445 1.20997 0.95387 0.84421 0.94863 0.91733 1.21933 0.96805 0.99454 1.01949 1.20520 0.92616 0.86562 0.94238 0.92228 1.22293 0.99126 0.99460 1.00529 1.42452 1.78421 1.10211 1.05864 1.19581 1.33974 0.90736 0.92130 0.90264 1.25542 1.03797 1.01397 0.96149 1.69833 1.56606 1.30065 1.05574 0.85159 0.77770 0.79185 0.77747 1.21706 1.22547 1.19241 1.73482 1.18571 1.04071 1.14174 1.43404 1.45925 1.07595 1.10931 0.68999 0.92717 0.93252 0.89972 0.88103 0.87852 0.82303 0.74938 0.91873 0.92480 0.93201 0.93574 0.91433 0.94666 0.79525 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.90 71.98 0.71 -0.23 16 2 C -0.05 -0.31 6.49 29.85 0.19 -0.11 16 3 C 0.04 0.53 6.48 41.40 0.27 0.80 16 4 C -0.20 -4.46 10.73 22.41 0.24 -4.22 16 5 C -0.03 -0.89 7.13 42.46 0.30 -0.59 16 6 C 0.60 19.93 7.79 86.75 0.68 20.60 16 7 O -0.57 -23.09 16.59 -3.94 -0.07 -23.15 16 8 N -0.69 -21.49 4.38 -445.55 -1.95 -23.44 16 9 C 0.15 5.47 2.21 44.99 0.10 5.57 16 10 H 0.06 2.69 7.58 -2.39 -0.02 2.67 16 11 C -0.14 -5.29 9.33 71.98 0.67 -4.62 16 12 C 0.17 6.70 2.52 44.99 0.11 6.82 16 13 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 14 C -0.15 -5.62 9.33 71.98 0.67 -4.94 16 15 N -0.73 -36.64 4.43 -322.94 -1.43 -38.07 16 16 C -0.23 -12.73 9.93 84.03 0.83 -11.89 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 19 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 20 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 N -0.27 -5.83 11.92 -48.18 -0.57 -6.40 16 25 N -0.36 -4.99 6.83 -47.93 -0.33 -5.31 16 26 H 0.46 2.50 8.96 -219.99 -1.97 0.53 16 27 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.41 11.05 8.12 -92.71 -0.75 10.30 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.39 7.45 -2.39 -0.02 2.37 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.03 7.45 -2.39 -0.02 2.01 16 39 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.37 20.53 7.58 -92.71 -0.70 19.82 16 41 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -72.86 348.10 0.84 -72.01 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -2.37 Total: 32.47 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 5.25 Total: 3.23 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -4.00 Total: -132.87 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.07 Total: -23.15 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -72.86 0.84 -72.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485125038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.048 kcal (2) G-P(sol) polarization free energy of solvation -72.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds