Wall clock time and date at job start Tue Mar 31 2020 02:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46509 * 119.99797 * 2 1 4 4 C 1.52998 * 109.46930 * 270.00084 * 3 2 1 5 5 C 1.52999 * 109.47306 * 299.99700 * 4 3 2 6 6 C 1.52998 * 109.47187 * 59.99912 * 4 3 2 7 7 C 1.52997 * 109.46913 * 180.02562 * 4 3 2 8 8 N 1.46505 * 109.47139 * 180.02562 * 7 4 3 9 9 C 1.36940 * 119.99932 * 180.02562 * 8 7 4 10 10 H 1.08001 * 120.00227 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99892 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99991 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99934 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47352 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46948 * 120.00297 * 13 11 9 16 16 H 1.48501 * 109.46996 * 240.00082 * 13 11 9 17 17 C 1.34776 * 120.00286 * 179.97438 * 2 1 3 18 18 O 1.21600 * 120.00171 * 181.91557 * 17 2 1 19 19 C 1.47431 * 119.99900 * 1.91914 * 17 2 1 20 20 C 1.41285 * 126.41537 * 345.65805 * 19 17 2 21 21 N 1.30448 * 108.02316 * 179.70593 * 20 19 17 22 22 N 1.39932 * 108.89458 * 0.40297 * 21 20 19 23 23 H 0.97000 * 125.75288 * 179.85091 * 22 21 20 24 24 C 1.34259 * 108.49510 * 359.58688 * 22 21 20 25 25 H 1.08997 * 109.46808 * 264.18742 * 1 2 3 26 26 H 1.08993 * 109.47410 * 24.19463 * 1 2 3 27 27 H 1.09002 * 109.46949 * 144.19664 * 1 2 3 28 28 H 1.09001 * 109.46854 * 29.99963 * 3 2 1 29 29 H 1.08995 * 109.46657 * 150.00088 * 3 2 1 30 30 H 1.09005 * 109.46805 * 60.00403 * 5 4 3 31 31 H 1.09000 * 109.47527 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47511 * 300.00749 * 5 4 3 33 33 H 1.09001 * 109.47251 * 59.99721 * 6 4 3 34 34 H 1.09000 * 109.47247 * 179.97438 * 6 4 3 35 35 H 1.09005 * 109.47404 * 299.99890 * 6 4 3 36 36 H 1.09009 * 109.47030 * 299.99776 * 7 4 3 37 37 H 1.08994 * 109.47237 * 59.99654 * 7 4 3 38 38 H 0.96992 * 119.99913 * 359.97438 * 8 7 4 39 39 H 0.96998 * 120.00217 * 179.97438 * 12 11 9 40 40 H 1.08004 * 125.98671 * 359.97438 * 20 19 17 41 41 H 1.07995 * 126.29265 * 180.22421 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2794 0.6443 -2.1638 6 6 1.1156 1.8933 -2.1637 7 6 3.2179 3.0352 -1.4425 8 7 3.4616 3.4584 -2.8237 9 6 4.1355 4.6239 -3.0740 10 1 4.4871 5.2314 -2.2531 11 6 4.3668 5.0247 -4.3827 12 7 3.9387 4.2842 -5.3831 13 14 5.2855 6.6149 -4.7240 14 1 5.6577 7.2575 -3.4379 15 1 6.5146 6.3190 -5.5029 16 1 4.4149 7.5322 -5.5024 17 6 2.1390 -1.1672 0.0005 18 8 3.3544 -1.1674 0.0357 19 6 1.4025 -2.4436 -0.0417 20 6 0.0216 -2.6235 0.1971 21 7 -0.2497 -3.8921 0.0604 22 7 0.9288 -4.5758 -0.2585 23 1 1.0065 -5.5305 -0.4115 24 6 1.9328 -3.6867 -0.3228 25 1 -0.3633 -0.1041 1.0224 26 1 -0.3634 0.9373 -0.4211 27 1 -0.3633 -0.8335 -0.6012 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 2.7344 -0.2997 -2.1638 31 1 3.4607 0.9587 -3.1916 32 1 4.2318 0.5139 -1.6500 33 1 0.5264 2.6529 -1.6499 34 1 1.2972 2.2084 -3.1913 35 1 0.5706 0.9493 -2.1637 36 1 2.6292 3.7951 -0.9285 37 1 4.1703 2.9045 -0.9288 38 1 3.1461 2.9127 -3.5610 39 1 4.1000 4.5644 -6.2976 40 1 -0.6862 -1.8462 0.4448 41 1 2.9655 -3.9042 -0.5519 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485246464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:41 Heat of formation + Delta-G solvation = 42.481138 kcal Electronic energy + Delta-G solvation = -22445.061324 eV Core-core repulsion = 19168.840464 eV Total energy + Delta-G solvation = -3276.220860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -42.41417 -40.73834 -38.50801 -36.41489 -34.94612 -32.85784 -32.10489 -31.18572 -28.90815 -28.10444 -27.32690 -26.83759 -24.71339 -23.19553 -22.61449 -20.54131 -19.86939 -19.17865 -18.93527 -17.16566 -17.05345 -16.79009 -16.44379 -15.77151 -15.72086 -15.41947 -15.20255 -15.02676 -14.31671 -14.26970 -14.11118 -13.87020 -13.79406 -13.61398 -12.93191 -12.85429 -12.62967 -12.43232 -12.39907 -12.18712 -12.14121 -12.02406 -11.62090 -11.58038 -11.42660 -10.92147 -10.79680 -10.71008 -9.85983 -9.43235 -8.94155 -7.92217 -5.19681 0.59651 1.20830 1.47793 1.49013 1.59075 1.82873 2.16256 2.51579 2.58696 3.41200 3.65665 3.90290 3.91333 3.96841 4.03011 4.10229 4.30590 4.37917 4.43847 4.52204 4.58910 4.68878 4.74914 4.87032 4.89995 4.96939 4.97533 5.00777 5.20261 5.22012 5.24449 5.36646 5.49036 5.52308 5.59766 5.68687 6.23776 6.30525 6.49498 6.58989 7.35275 7.36881 8.14801 8.38371 9.31849 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037794 B = 0.003479 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.674611 B = 8045.298781 C = 8166.852578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.602 5.602 3 C 0.137 3.863 4 C -0.077 4.077 5 C -0.108 4.108 6 C -0.127 4.127 7 C 0.163 3.837 8 N -0.739 5.739 9 C -0.241 4.241 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.973 3.027 14 H -0.266 1.266 15 H -0.296 1.296 16 H -0.292 1.292 17 C 0.586 3.414 18 O -0.585 6.585 19 C -0.315 4.315 20 C 0.073 3.927 21 N -0.321 5.321 22 N -0.452 5.452 23 H 0.458 0.542 24 C 0.138 3.862 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.010 0.990 38 H 0.375 0.625 39 H 0.250 0.750 40 H 0.231 0.769 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 -16.759 13.815 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.332 5.332 3 C 0.014 3.986 4 C -0.078 4.078 5 C -0.166 4.166 6 C -0.184 4.184 7 C 0.036 3.964 8 N -0.383 5.383 9 C -0.373 4.373 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.803 3.197 14 H -0.190 1.190 15 H -0.223 1.223 16 H -0.219 1.219 17 C 0.377 3.623 18 O -0.467 6.467 19 C -0.330 4.330 20 C -0.114 4.114 21 N -0.143 5.143 22 N -0.158 5.158 23 H 0.306 0.694 24 C -0.016 4.016 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.028 0.972 38 H 0.209 0.791 39 H 0.059 0.941 40 H 0.246 0.754 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.709 -17.490 13.966 25.259 hybrid contribution 1.481 0.865 -1.102 2.039 sum -10.228 -16.625 12.864 23.377 Atomic orbital electron populations 1.22791 0.77870 1.05156 1.03482 1.47529 1.08056 1.04805 1.72821 1.21352 0.97776 0.84990 0.94489 1.21011 0.96050 0.94195 0.96552 1.21543 0.98927 0.97425 0.98675 1.21792 0.95500 1.01644 0.99439 1.20746 0.95966 0.93551 0.86166 1.42598 1.67771 1.25082 1.02835 1.19703 1.26744 0.98844 0.92005 0.90729 1.25547 1.03458 1.02450 0.95522 1.69833 1.53510 1.40693 0.98167 0.85066 0.77488 0.79371 0.77806 1.19043 1.22322 1.21910 1.17593 0.86108 0.83496 0.75134 1.90771 1.15159 1.87875 1.52864 1.20309 0.95369 0.93971 1.23377 1.25374 0.95018 0.94584 0.96451 1.77149 1.06410 1.07108 1.23619 1.46265 1.04899 1.11176 1.53461 0.69403 1.23350 0.95947 0.88544 0.93759 0.89547 0.89280 0.89100 0.87732 0.91437 0.93209 0.95432 0.94431 0.91520 0.95193 0.91039 0.95205 0.97238 0.79112 0.94128 0.75367 0.77690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 7.47 127.77 0.95 1.59 16 2 N -0.60 -13.35 2.40 -850.66 -2.04 -15.39 16 3 C 0.14 3.60 4.58 86.38 0.40 4.00 16 4 C -0.08 -2.54 0.60 -52.18 -0.03 -2.57 16 5 C -0.11 -4.11 6.99 71.98 0.50 -3.60 16 6 C -0.13 -3.85 7.07 71.98 0.51 -3.34 16 7 C 0.16 6.72 5.15 86.38 0.44 7.17 16 8 N -0.74 -38.72 5.00 -343.44 -1.72 -40.44 16 9 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 10 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 11 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 12 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 13 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 15 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 16 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 17 C 0.59 15.44 6.01 86.66 0.52 15.96 16 18 O -0.59 -20.12 14.85 -4.03 -0.06 -20.18 16 19 C -0.32 -6.43 5.90 -20.15 -0.12 -6.55 16 20 C 0.07 1.17 9.80 85.65 0.84 2.01 16 21 N -0.32 -5.59 12.63 -56.28 -0.71 -6.31 16 22 N -0.45 -5.92 7.29 -56.32 -0.41 -6.33 16 23 H 0.46 2.71 8.96 -213.43 -1.91 0.80 16 24 C 0.14 2.25 11.85 84.28 1.00 3.25 16 25 H 0.09 0.68 7.58 -2.39 -0.02 0.66 16 26 H 0.09 1.08 6.31 -2.39 -0.02 1.06 16 27 H 0.09 1.04 4.89 -2.39 -0.01 1.03 16 28 H 0.10 2.16 8.07 -2.39 -0.02 2.14 16 29 H 0.07 2.04 7.39 -2.39 -0.02 2.02 16 30 H 0.05 1.74 6.18 -2.38 -0.01 1.73 16 31 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 32 H 0.04 1.53 7.77 -2.39 -0.02 1.51 16 33 H 0.07 1.79 8.07 -2.39 -0.02 1.77 16 34 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 35 H 0.07 1.79 6.08 -2.38 -0.01 1.78 16 36 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.38 20.94 5.36 -92.71 -0.50 20.45 16 39 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.23 2.20 4.70 -2.91 -0.01 2.19 16 41 H 0.21 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -77.99 322.59 2.35 -75.63 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -1.34 Total: 23.51 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 6.32 Total: 0.78 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -4.60 Total: -129.04 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.06 Total: -20.18 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.99 2.35 -75.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485246464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.115 kcal (2) G-P(sol) polarization free energy of solvation -77.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds