Wall clock time and date at job start Tue Mar 31 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 6 6 N 1.46504 * 109.47016 * 184.99757 * 5 3 2 7 7 C 1.34772 * 120.00116 * 179.97438 * 6 5 3 8 8 O 1.21607 * 120.00019 * 0.02562 * 7 6 5 9 9 C 1.47428 * 119.99919 * 179.97438 * 7 6 5 10 10 C 1.41287 * 126.41510 * 0.02562 * 9 7 6 11 11 N 1.30448 * 108.02213 * 179.97438 * 10 9 7 12 12 N 1.39932 * 108.89887 * 0.02562 * 11 10 9 13 13 C 1.46496 * 125.75970 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46762 * 304.97431 * 13 12 11 15 15 C 1.34267 * 108.48889 * 359.74203 * 12 11 10 16 16 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 17 17 C 1.36933 * 120.00353 * 274.99951 * 16 3 2 18 18 H 1.08001 * 119.99702 * 0.02562 * 17 16 3 19 19 C 1.38814 * 120.00726 * 180.02562 * 17 16 3 20 20 N 1.31618 * 120.00679 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99589 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46813 * 89.99970 * 21 19 17 23 23 H 1.48494 * 109.47094 * 209.99782 * 21 19 17 24 24 H 1.48501 * 109.47185 * 330.00393 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.08996 * 109.46875 * 304.99826 * 5 3 2 31 31 H 1.09002 * 109.47117 * 65.00082 * 5 3 2 32 32 H 0.97001 * 119.99463 * 0.02562 * 6 5 3 33 33 H 1.07995 * 125.99150 * 359.94521 * 10 9 7 34 34 H 1.09006 * 109.47069 * 64.96520 * 13 12 11 35 35 H 1.09000 * 109.47585 * 184.96739 * 13 12 11 36 36 H 1.09009 * 109.46694 * 179.97438 * 14 13 12 37 37 H 1.08994 * 109.46753 * 299.99008 * 14 13 12 38 38 H 1.08997 * 109.47266 * 59.99705 * 14 13 12 39 39 H 1.08001 * 126.28954 * 180.24692 * 15 12 11 40 40 H 0.97001 * 120.00176 * 95.00254 * 16 3 2 41 41 H 0.96997 * 120.00205 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 4.0631 2.8169 -0.0060 7 6 5.3857 3.0630 -0.0858 8 8 6.1656 2.1459 -0.2577 9 6 5.8870 4.4443 0.0341 10 6 5.1070 5.6052 0.2340 11 7 5.9136 6.6291 0.2875 12 7 7.2287 6.1790 0.1263 13 6 8.4276 7.0208 0.1256 14 6 8.2780 8.1205 -0.9276 15 6 7.2068 4.8447 -0.0226 16 7 1.6524 2.0975 1.2517 17 6 0.4156 2.6735 1.3687 18 1 -0.2742 2.6446 0.5382 19 6 0.0485 3.2946 2.5546 20 7 -1.1405 3.8478 2.6672 21 14 1.2415 3.3441 3.9913 22 1 2.0774 4.5681 3.8986 23 1 0.4804 3.3597 5.2663 24 1 2.1151 2.1439 3.9508 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.9954 0.8312 0.6660 31 1 3.8499 1.0377 -1.0960 32 1 3.4410 3.5483 0.1315 33 1 4.0315 5.6391 0.3258 34 1 8.5538 7.4742 1.1088 35 1 9.3001 6.4104 -0.1077 36 1 9.1699 8.7471 -0.9278 37 1 8.1519 7.6671 -1.9107 38 1 7.4056 8.7308 -0.6942 39 1 8.0641 4.2031 -0.1632 40 1 2.2719 2.1232 1.9977 41 1 -1.3968 4.2822 3.4958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494954115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:45 Heat of formation + Delta-G solvation = 19.810373 kcal Electronic energy + Delta-G solvation = -21817.844897 eV Core-core repulsion = 18540.640959 eV Total energy + Delta-G solvation = -3277.203938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.37012 -40.26266 -38.29942 -35.51431 -35.13012 -34.10250 -32.05097 -31.57970 -30.94006 -29.24424 -25.67011 -24.78259 -24.22274 -23.07904 -21.75554 -21.54707 -20.84481 -19.65320 -18.76008 -17.10558 -16.96077 -16.86227 -16.59414 -16.03230 -15.68193 -15.46984 -15.14494 -14.72550 -14.65602 -14.52762 -14.35519 -13.98824 -13.79613 -13.37439 -13.06362 -12.98581 -12.85271 -12.81265 -12.47777 -12.35477 -12.07355 -11.94106 -11.80457 -11.57627 -11.39409 -10.97282 -10.82898 -10.59982 -10.08793 -9.61642 -9.26160 -7.93233 -5.24538 0.54967 1.13125 1.40849 1.41790 1.42929 1.48755 2.39978 2.49564 2.53542 3.38396 3.45831 3.64215 3.79080 3.93326 4.02157 4.07300 4.13705 4.34751 4.36944 4.41944 4.48368 4.60148 4.66245 4.78975 4.85160 4.86705 4.88342 5.11620 5.16520 5.20849 5.22840 5.39023 5.51111 5.60618 5.75721 5.90472 5.90805 6.29693 6.48510 6.68597 7.16003 7.32062 7.91228 8.09622 9.27922 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.004627 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.781595 B = 6050.626492 C = 7147.650745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.168 3.832 4 H 0.061 0.939 5 C 0.122 3.878 6 N -0.714 5.714 7 C 0.593 3.407 8 O -0.591 6.591 9 C -0.318 4.318 10 C 0.077 3.923 11 N -0.321 5.321 12 N -0.357 5.357 13 C 0.115 3.885 14 C -0.161 4.161 15 C 0.137 3.863 16 N -0.746 5.746 17 C -0.202 4.202 18 H 0.070 0.930 19 C -0.057 4.057 20 N -0.982 5.982 21 Si 0.936 3.064 22 H -0.281 1.281 23 H -0.306 1.306 24 H -0.261 1.261 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.409 0.591 33 H 0.194 0.806 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.215 0.785 40 H 0.362 0.638 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.822 2.883 -7.686 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.060 3.940 4 H 0.079 0.921 5 C -0.002 4.002 6 N -0.364 5.364 7 C 0.382 3.618 8 O -0.474 6.474 9 C -0.333 4.333 10 C -0.110 4.110 11 N -0.141 5.141 12 N -0.135 5.135 13 C -0.004 4.004 14 C -0.219 4.219 15 C -0.016 4.016 16 N -0.390 5.390 17 C -0.333 4.333 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.634 5.634 21 Si 0.766 3.234 22 H -0.207 1.207 23 H -0.234 1.234 24 H -0.186 1.186 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.245 0.755 33 H 0.211 0.789 34 H 0.116 0.884 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.231 0.769 40 H 0.195 0.805 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 21.374 3.696 -7.739 23.031 hybrid contribution -0.505 -0.326 1.278 1.413 sum 20.869 3.371 -6.461 22.105 Atomic orbital electron populations 1.21695 0.96379 1.00423 1.01604 1.21965 0.96105 0.97028 1.01734 1.20707 0.91261 0.93330 0.88719 0.92146 1.21609 0.93649 0.82729 1.02202 1.45797 1.07026 1.10636 1.72970 1.17457 0.81944 0.87246 0.75162 1.90701 1.56784 1.46788 1.53153 1.20294 0.94245 0.93802 1.24938 1.24312 1.00780 0.89302 0.96595 1.77111 0.88056 1.23714 1.25193 1.49037 1.06773 1.05483 1.52256 1.22283 0.82266 0.93392 1.02449 1.22026 1.03863 0.98127 0.97855 1.23358 0.98815 0.85374 0.94093 1.42835 1.15356 1.67659 1.13134 1.18975 0.91390 1.24644 0.98338 0.91177 1.25232 0.97785 1.01660 1.00158 1.69841 1.21609 1.44741 1.27216 0.85689 0.79116 0.78447 0.80117 1.20722 1.23379 1.18621 0.92787 0.93868 0.93563 0.92722 0.90166 0.92215 0.89771 0.75532 0.78898 0.88430 0.84745 0.87790 0.92675 0.93142 0.76881 0.80465 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.18 71.98 0.66 -4.32 16 2 C -0.13 -3.95 5.61 30.60 0.17 -3.78 16 3 C 0.17 5.66 2.59 45.00 0.12 5.77 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 3.70 5.23 86.38 0.45 4.15 16 6 N -0.71 -22.11 5.38 -466.36 -2.51 -24.61 16 7 C 0.59 18.85 7.81 86.66 0.68 19.53 16 8 O -0.59 -21.46 16.90 -4.05 -0.07 -21.53 16 9 C -0.32 -8.80 6.13 -20.15 -0.12 -8.92 16 10 C 0.08 2.15 11.50 85.65 0.99 3.14 16 11 N -0.32 -8.69 12.33 -56.28 -0.69 -9.38 16 12 N -0.36 -7.29 3.65 -346.29 -1.26 -8.55 16 13 C 0.11 1.24 7.21 86.38 0.62 1.86 16 14 C -0.16 -1.74 10.09 71.98 0.73 -1.01 16 15 C 0.14 2.94 11.25 84.27 0.95 3.89 16 16 N -0.75 -31.32 4.31 -322.95 -1.39 -32.72 16 17 C -0.20 -10.45 8.24 84.03 0.69 -9.76 16 18 H 0.07 3.95 7.55 -2.91 -0.02 3.93 16 19 C -0.06 -3.19 5.50 84.86 0.47 -2.73 16 20 N -0.98 -60.82 13.97 21.65 0.30 -60.52 16 21 Si 0.94 44.74 27.74 68.60 1.90 46.64 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 24 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.99 5.99 -2.38 -0.01 1.97 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.41 12.71 7.09 -92.71 -0.66 12.06 16 33 H 0.19 5.03 7.50 -2.91 -0.02 5.01 16 34 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.13 0.52 8.06 -2.39 -0.02 0.50 16 36 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.21 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.36 15.37 5.66 -92.71 -0.52 14.84 16 41 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -71.48 343.07 2.47 -69.02 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.21 Total: 33.83 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 6.40 Total: 7.83 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -5.56 Total: -135.79 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.53 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Total: -71.48 2.47 -69.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494954115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.826 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds