Wall clock time and date at job start Tue Mar 31 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47487 * 2 1 4 4 N 1.33319 * 126.10615 * 270.02490 * 3 2 1 5 5 C 1.30858 * 109.68911 * 179.97438 * 4 3 2 6 6 N 1.34499 * 109.15707 * 359.73193 * 5 4 3 7 7 H 0.97005 * 126.46508 * 180.28893 * 6 5 4 8 8 C 1.36661 * 126.10807 * 89.99579 * 3 2 1 9 9 C 1.46766 * 126.84613 * 0.02577 * 8 3 2 10 10 O 1.21681 * 119.99576 * 359.97438 * 9 8 3 11 11 N 1.34779 * 119.99822 * 179.97438 * 9 8 3 12 12 C 1.46500 * 119.99741 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47175 * 35.00237 * 12 11 9 14 14 C 1.53006 * 109.46998 * 275.00368 * 12 11 9 15 15 C 1.52997 * 109.47204 * 155.00342 * 12 11 9 16 16 C 1.52996 * 109.46894 * 295.00302 * 15 12 11 17 17 N 1.46505 * 109.46918 * 180.02562 * 16 15 12 18 18 C 1.36939 * 119.99874 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99946 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00298 * 180.02562 * 18 17 16 21 21 N 1.31615 * 120.00384 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99652 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47060 * 90.00286 * 22 20 18 24 24 H 1.48498 * 109.47333 * 210.00397 * 22 20 18 25 25 H 1.48500 * 109.47268 * 330.00649 * 22 20 18 26 26 H 1.08999 * 109.46787 * 300.00177 * 1 2 3 27 27 H 1.08999 * 109.46865 * 60.00112 * 1 2 3 28 28 H 1.09006 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47426 * 239.99425 * 2 1 3 30 30 H 1.09009 * 109.46819 * 119.99798 * 2 1 3 31 31 H 1.07998 * 125.42170 * 179.97438 * 5 4 3 32 32 H 0.96997 * 120.00149 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.46998 * 179.97438 * 14 12 11 34 34 H 1.09000 * 109.47050 * 299.99945 * 14 12 11 35 35 H 1.09001 * 109.46801 * 60.00058 * 14 12 11 36 36 H 1.09001 * 109.47096 * 54.99991 * 15 12 11 37 37 H 1.08994 * 109.47065 * 175.00150 * 15 12 11 38 38 H 1.09001 * 109.46995 * 299.99751 * 16 15 12 39 39 H 1.08998 * 109.47867 * 60.00073 * 16 15 12 40 40 H 0.96994 * 120.00434 * 359.97438 * 17 16 15 41 41 H 0.97001 * 119.99790 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2939 2.1616 -1.0771 5 6 2.7120 3.3451 -0.7073 6 7 2.7280 3.4076 0.6362 7 1 2.9919 4.1701 1.1747 8 6 2.3008 2.1800 1.1041 9 6 2.1578 1.7743 2.5073 10 8 1.7625 0.6563 2.7800 11 7 2.4644 2.6400 3.4937 12 6 2.3211 2.2352 4.8943 13 1 2.5726 1.1794 4.9949 14 6 0.8763 2.4605 5.3451 15 6 3.2629 3.0690 5.7652 16 6 4.7134 2.7498 5.3979 17 7 5.6153 3.5479 6.2322 18 6 6.9713 3.4296 6.0818 19 1 7.3758 2.7477 5.3483 20 6 7.8259 4.1853 6.8726 21 7 9.1292 4.0713 6.7283 22 14 7.1262 5.3641 8.1416 23 1 6.9576 4.6554 9.4356 24 1 8.0565 6.5076 8.3211 25 1 5.8083 5.8665 7.6770 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9951 4.1457 -1.3746 32 1 2.7792 3.5314 3.2763 33 1 0.7696 2.1589 6.3871 34 1 0.6248 3.5163 5.2445 35 1 0.2054 1.8664 4.7246 36 1 3.0703 4.1287 5.5972 37 1 3.0931 2.8309 6.8151 38 1 4.9060 1.6902 5.5659 39 1 4.8833 2.9880 4.3479 40 1 5.2521 4.1600 6.8911 41 1 9.7263 4.5997 7.2807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497314914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:25 Heat of formation + Delta-G solvation = 16.837817 kcal Electronic energy + Delta-G solvation = -21774.086888 eV Core-core repulsion = 18496.754051 eV Total energy + Delta-G solvation = -3277.332837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.42398 -39.59154 -36.73699 -34.78157 -34.20591 -32.54185 -31.79211 -30.92560 -29.05725 -28.35093 -24.62304 -23.87107 -22.98610 -21.92690 -21.32295 -20.65020 -19.77622 -18.90737 -17.62439 -16.47216 -16.19604 -15.73202 -15.01546 -14.81148 -14.44370 -14.25316 -14.10474 -13.97390 -13.70470 -13.53733 -13.40260 -12.69310 -12.63725 -12.45016 -12.13919 -11.60605 -11.55845 -11.34566 -11.07266 -10.97647 -10.82024 -10.60365 -10.55698 -10.22435 -10.21936 -9.90834 -9.65991 -9.24920 -8.96441 -8.66094 -7.31286 -5.83131 -3.19681 1.13176 2.65472 2.68245 3.02505 3.21446 3.30046 3.33473 3.39266 4.22742 4.52166 4.57060 4.69482 4.84798 4.96712 5.07032 5.15823 5.36776 5.41148 5.42171 5.49446 5.54059 5.54729 5.59171 5.69173 5.83568 5.85932 5.94209 6.04944 6.12608 6.14777 6.16825 6.35034 6.41736 6.60300 6.66077 6.96250 7.31676 7.72613 7.92643 8.05300 8.35561 9.14249 9.86267 10.05702 11.35213 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.003693 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.010634 B = 7579.466392 C = 8235.566144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 C 0.100 3.900 4 N -0.499 5.499 5 C 0.219 3.781 6 N -0.554 5.554 7 H 0.424 0.576 8 C -0.090 4.090 9 C 0.596 3.404 10 O -0.522 6.522 11 N -0.719 5.719 12 C 0.147 3.853 13 H 0.094 0.906 14 C -0.161 4.161 15 C -0.140 4.140 16 C 0.158 3.842 17 N -0.757 5.757 18 C -0.248 4.248 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.887 3.113 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.215 0.785 32 H 0.394 0.606 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.360 0.640 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.063 -0.624 -11.500 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C -0.035 4.035 4 N -0.219 5.219 5 C -0.065 4.065 6 N -0.159 5.159 7 H 0.262 0.738 8 C -0.206 4.206 9 C 0.383 3.617 10 O -0.398 6.398 11 N -0.370 5.370 12 C 0.043 3.957 13 H 0.112 0.888 14 C -0.220 4.220 15 C -0.178 4.178 16 C 0.031 3.969 17 N -0.403 5.403 18 C -0.377 4.377 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.581 5.581 22 Si 0.717 3.283 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.232 0.768 32 H 0.228 0.772 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.216 -1.803 -12.148 22.806 hybrid contribution 0.249 2.328 1.845 2.981 sum -18.968 0.525 -10.304 21.592 Atomic orbital electron populations 1.21605 0.94478 1.01701 1.01627 1.20062 0.96109 0.88802 1.03809 1.21042 0.98845 0.96979 0.86617 1.70130 1.18573 1.02690 1.30490 1.25149 1.01344 0.97946 0.82082 1.43368 1.50434 1.13222 1.08885 0.73761 1.20988 1.16130 0.88244 0.95226 1.16803 0.77532 0.84872 0.82542 1.90811 1.46534 1.19666 1.82830 1.46014 1.67925 1.16572 1.06532 1.20996 0.94949 1.00780 0.79004 0.88771 1.22170 0.96182 1.01786 1.01815 1.22129 0.95785 0.99773 1.00110 1.20606 0.86948 0.95104 0.94241 1.42712 1.03539 1.49668 1.44352 1.19058 0.80382 1.20623 1.17671 0.89309 1.24693 0.95096 0.99844 0.99506 1.69704 1.01200 1.44333 1.42848 0.86521 0.77986 0.81369 0.82426 1.20990 1.21688 1.20447 0.92688 0.92999 0.92222 0.90658 0.88683 0.76836 0.77217 0.91351 0.92662 0.92119 0.91516 0.90026 0.95383 0.95874 0.80699 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.90 37.16 0.37 -1.06 16 2 C -0.05 -0.59 5.93 -27.89 -0.17 -0.75 16 3 C 0.10 1.28 6.40 -82.52 -0.53 0.75 16 4 N -0.50 -6.09 11.20 -10.65 -0.12 -6.21 16 5 C 0.22 1.91 13.01 -90.57 -1.18 0.73 16 6 N -0.55 -4.77 6.07 -10.79 -0.07 -4.83 16 7 H 0.42 2.38 8.32 -40.82 -0.34 2.04 16 8 C -0.09 -1.08 7.08 -82.14 -0.58 -1.66 16 9 C 0.60 7.82 7.75 -12.81 -0.10 7.72 16 10 O -0.52 -8.14 14.48 5.21 0.08 -8.06 16 11 N -0.72 -8.13 4.53 -55.08 -0.25 -8.38 16 12 C 0.15 1.76 2.57 -67.93 -0.17 1.59 16 13 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 14 C -0.16 -1.65 9.48 37.16 0.35 -1.29 16 15 C -0.14 -1.87 4.87 -26.73 -0.13 -2.00 16 16 C 0.16 2.91 6.15 -4.04 -0.02 2.88 16 17 N -0.76 -17.52 5.41 -59.91 -0.32 -17.84 16 18 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 19 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 22 Si 0.89 21.66 27.74 -169.99 -4.71 16.94 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.23 6.48 -51.92 -0.34 0.89 16 31 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.39 3.68 7.85 -40.82 -0.32 3.36 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.43 7.75 -51.93 -0.40 0.03 16 40 H 0.36 8.03 5.53 -40.82 -0.23 7.81 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -35.17 342.58 -8.13 -43.31 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.26 Total: 8.51 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.42 Total: -0.20 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 0.02 Total: -65.66 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.17 -8.13 -43.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497314914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.146 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds