Wall clock time and date at job start Tue Mar 31 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30864 * 125.41840 * 2 1 4 4 C 1.33315 * 109.68180 * 179.73866 * 3 2 1 5 5 C 1.36667 * 107.78900 * 0.37613 * 4 3 2 6 6 C 1.46765 * 126.84584 * 179.89537 * 5 4 3 7 7 O 1.21677 * 120.00150 * 185.05485 * 6 5 4 8 8 N 1.34774 * 119.99807 * 5.04631 * 6 5 4 9 9 C 1.46507 * 119.99966 * 184.67253 * 8 6 5 10 10 H 1.09008 * 109.46850 * 328.28726 * 9 8 6 11 11 C 1.52995 * 109.47338 * 88.28767 * 9 8 6 12 12 C 1.53001 * 109.47027 * 208.29284 * 9 8 6 13 13 N 1.46497 * 109.47399 * 55.38366 * 12 9 8 14 14 C 1.46496 * 120.00237 * 264.57893 * 13 12 9 15 15 C 1.36941 * 119.99543 * 84.58471 * 13 12 9 16 16 H 1.07999 * 120.00042 * 352.43059 * 15 13 12 17 17 C 1.38809 * 119.99657 * 172.71174 * 15 13 12 18 18 N 1.31614 * 120.00464 * 5.49979 * 17 15 13 19 19 Si 1.86803 * 119.99795 * 185.49956 * 17 15 13 20 20 H 1.48497 * 109.47262 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47217 * 119.99957 * 19 17 15 22 22 H 1.48500 * 109.47038 * 239.99796 * 19 17 15 23 23 N 1.34491 * 125.41855 * 179.97438 * 2 1 3 24 24 C 1.46506 * 126.47001 * 0.02562 * 23 2 1 25 25 H 1.08995 * 109.47865 * 270.03167 * 1 2 3 26 26 H 1.09005 * 109.47156 * 30.03151 * 1 2 3 27 27 H 1.08997 * 109.47034 * 150.02298 * 1 2 3 28 28 H 1.08005 * 126.10859 * 180.27128 * 4 3 2 29 29 H 0.96994 * 120.00532 * 4.67345 * 8 6 5 30 30 H 1.08996 * 109.47187 * 59.99773 * 11 9 8 31 31 H 1.09001 * 109.47143 * 180.02562 * 11 9 8 32 32 H 1.09003 * 109.47256 * 300.00157 * 11 9 8 33 33 H 1.08997 * 109.46543 * 295.38519 * 12 9 8 34 34 H 1.08999 * 109.46988 * 175.38947 * 12 9 8 35 35 H 1.08997 * 109.47187 * 243.95734 * 14 13 12 36 36 H 1.08995 * 109.46922 * 3.96316 * 14 13 12 37 37 H 1.09002 * 109.47050 * 123.95993 * 14 13 12 38 38 H 0.96997 * 120.00372 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.46796 * 274.03371 * 24 23 2 40 40 H 1.08997 * 109.47545 * 34.03586 * 24 23 2 41 41 H 1.09001 * 109.46720 * 154.04013 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5485 0.7049 0.0057 5 6 3.5975 -0.6609 0.0010 6 6 4.8028 -1.4983 0.0024 7 8 4.7039 -2.7071 -0.0952 8 7 6.0192 -0.9284 0.1116 9 6 7.2261 -1.7527 0.0103 10 1 7.0199 -2.7486 0.4026 11 6 7.6491 -1.8597 -1.4562 12 6 8.3530 -1.1087 0.8205 13 7 7.9073 -0.9056 2.2011 14 6 7.3580 0.3893 2.6105 15 6 8.0043 -1.9261 3.1091 16 1 8.2932 -2.9141 2.7821 17 6 7.7257 -1.6921 4.4486 18 7 7.2645 -0.5199 4.8299 19 14 8.0053 -3.0411 5.7102 20 1 8.5243 -4.2549 5.0303 21 1 8.9917 -2.5784 6.7192 22 1 6.7216 -3.3624 6.3841 23 7 2.2864 -1.0960 0.0005 24 6 1.8310 -2.4885 0.0006 25 1 -0.3635 0.0006 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 4.3978 1.3721 0.0113 29 1 6.0957 0.0275 0.2572 30 1 7.8552 -0.8639 -1.8484 31 1 8.5468 -2.4733 -1.5316 32 1 6.8463 -2.3185 -2.0334 33 1 8.6150 -0.1477 0.3781 34 1 9.2253 -1.7622 0.8127 35 1 8.0077 0.8386 3.3615 36 1 7.2948 1.0475 1.7440 37 1 6.3626 0.2453 3.0307 38 1 7.0702 -0.3562 5.7660 39 1 1.6490 -2.8111 1.0257 40 1 0.9088 -2.5693 -0.5749 41 1 2.5964 -3.1211 -0.4489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498367543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:32 Heat of formation + Delta-G solvation = 51.642833 kcal Electronic energy + Delta-G solvation = -22722.919615 eV Core-core repulsion = 19447.096036 eV Total energy + Delta-G solvation = -3275.823579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.13688 -39.05073 -36.39292 -34.38456 -33.80064 -32.15390 -31.15563 -30.16934 -27.57706 -26.66743 -26.15452 -25.61541 -23.06966 -21.61525 -20.61219 -19.96124 -19.57770 -17.50838 -16.81400 -16.12773 -16.00030 -15.37437 -14.97679 -14.44644 -14.02573 -13.75385 -13.55566 -13.36869 -13.26588 -13.11405 -12.94004 -12.79487 -12.42995 -12.40931 -12.13421 -11.99641 -11.40323 -11.25428 -10.84827 -10.73218 -10.55974 -10.19824 -10.11950 -9.92030 -9.77362 -9.64124 -9.47968 -8.71824 -8.47587 -8.26291 -6.88326 -5.62802 -3.05416 1.50048 2.58688 2.93185 3.40202 3.46744 3.48609 3.64169 3.75479 4.34344 4.51615 4.74106 4.80509 5.06004 5.16310 5.31907 5.34402 5.37077 5.47470 5.51986 5.56506 5.64436 5.70930 5.77353 5.94719 6.05444 6.16688 6.23663 6.41089 6.49543 6.60624 6.67524 6.76926 7.04691 7.10921 7.63070 7.72606 7.90557 7.94820 8.03729 8.39107 8.61407 9.28723 9.90785 10.32581 11.37038 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.005391 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.620855 B = 5192.663239 C = 5786.612122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.216 3.784 3 N -0.495 5.495 4 C 0.037 3.963 5 C -0.075 4.075 6 C 0.595 3.405 7 O -0.557 6.557 8 N -0.685 5.685 9 C 0.115 3.885 10 H 0.089 0.911 11 C -0.158 4.158 12 C 0.145 3.855 13 N -0.608 5.608 14 C 0.172 3.828 15 C -0.242 4.242 16 H 0.073 0.927 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.292 1.292 23 N -0.424 5.424 24 C 0.064 3.936 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.178 0.822 29 H 0.398 0.602 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.041 0.959 36 H -0.013 1.013 37 H 0.043 0.957 38 H 0.248 0.752 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.344 0.650 -12.433 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 N -0.214 5.214 4 C -0.117 4.117 5 C -0.192 4.192 6 C 0.381 3.619 7 O -0.437 6.437 8 N -0.333 5.333 9 C 0.007 3.993 10 H 0.107 0.893 11 C -0.217 4.217 12 C 0.016 3.984 13 N -0.331 5.331 14 C 0.028 3.972 15 C -0.371 4.371 16 H 0.091 0.909 17 C -0.200 4.200 18 N -0.566 5.566 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.220 1.220 23 N -0.105 5.105 24 C -0.078 4.078 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.195 0.805 29 H 0.233 0.767 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.005 0.995 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.763 0.457 -12.311 15.719 hybrid contribution 0.396 -1.116 0.974 1.533 sum -9.367 -0.659 -11.337 14.721 Atomic orbital electron populations 1.20224 0.84659 1.03982 1.03770 1.23354 0.95797 0.81343 1.04093 1.70060 1.02212 1.28092 1.21020 1.22581 0.95018 0.91386 1.02730 1.20904 0.85389 0.95014 1.17917 1.16687 0.82224 0.86427 0.76516 1.90714 1.86747 1.14120 1.52150 1.45459 1.04602 1.11857 1.71421 1.22009 0.85664 0.96970 0.94616 0.89336 1.22143 1.01213 1.01431 0.96945 1.21077 0.93705 0.98098 0.85497 1.44001 1.72738 1.11606 1.04704 1.21061 0.99347 0.83706 0.93092 1.19308 1.39912 0.90086 0.87800 0.90865 1.24852 1.01013 0.96921 0.97220 1.70204 1.49909 1.21397 1.15074 0.86133 0.77386 0.81019 0.81775 1.20491 1.21692 1.21968 1.45023 1.05276 1.08182 1.52026 1.22297 1.02187 0.79225 1.04072 0.89852 0.88983 0.90796 0.80539 0.76697 0.92867 0.91784 0.93137 0.93520 0.92294 0.94028 0.99490 0.93807 0.94075 0.90237 0.89895 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.18 36.00 0.37 -0.23 16 2 C 0.22 3.00 7.88 -155.61 -1.23 1.78 16 3 N -0.49 -7.95 11.20 -10.58 -0.12 -8.07 16 4 C 0.04 0.59 11.36 -17.48 -0.20 0.39 16 5 C -0.08 -1.28 6.91 -82.14 -0.57 -1.85 16 6 C 0.60 11.18 7.78 -12.82 -0.10 11.08 16 7 O -0.56 -11.70 14.36 5.21 0.07 -11.62 16 8 N -0.68 -12.02 4.53 -55.08 -0.25 -12.27 16 9 C 0.11 2.03 2.93 -67.93 -0.20 1.83 16 10 H 0.09 1.87 7.41 -51.92 -0.38 1.48 16 11 C -0.16 -2.22 9.51 37.16 0.35 -1.87 16 12 C 0.15 2.75 5.25 -4.04 -0.02 2.73 16 13 N -0.61 -14.69 2.74 -181.13 -0.50 -15.19 16 14 C 0.17 4.13 8.16 59.84 0.49 4.62 16 15 C -0.24 -6.61 9.81 -15.06 -0.15 -6.76 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C 0.00 -0.12 5.46 -17.43 -0.10 -0.21 16 18 N -0.92 -26.81 9.46 55.49 0.52 -26.29 16 19 Si 0.91 22.44 29.56 -169.99 -5.02 17.41 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 N -0.42 -6.33 3.17 -117.27 -0.37 -6.70 16 24 C 0.06 0.76 10.58 59.85 0.63 1.39 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.48 7.11 -51.93 -0.37 0.11 16 28 H 0.18 2.38 7.50 -52.48 -0.39 1.99 16 29 H 0.40 6.45 6.35 -40.82 -0.26 6.19 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.78 7.84 -51.93 -0.41 0.38 16 34 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.04 1.11 7.01 -51.93 -0.36 0.74 16 36 H -0.01 -0.27 7.08 -51.93 -0.37 -0.64 16 37 H 0.04 1.18 7.09 -51.93 -0.37 0.81 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.66 7.15 -51.93 -0.37 0.29 16 41 H 0.11 1.50 6.19 -51.93 -0.32 1.18 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -33.93 335.95 -7.42 -41.35 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.11 Total: 3.41 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -0.71 Total: 12.90 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.71 Total: -68.51 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.07 Total: -11.62 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.93 -7.42 -41.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498367543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.992 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds