Wall clock time and date at job start Tue Mar 31 2020 01:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30864 * 125.41840 * 2 1 4 4 C 1.33315 * 109.68180 * 179.73866 * 3 2 1 5 5 C 1.36667 * 107.78900 * 0.37613 * 4 3 2 6 6 C 1.46765 * 126.84584 * 179.89537 * 5 4 3 7 7 O 1.21677 * 120.00150 * 185.05485 * 6 5 4 8 8 N 1.34774 * 119.99807 * 5.04631 * 6 5 4 9 9 C 1.46507 * 119.99966 * 184.67253 * 8 6 5 10 10 H 1.09008 * 109.46850 * 328.28726 * 9 8 6 11 11 C 1.52995 * 109.47338 * 88.28767 * 9 8 6 12 12 C 1.53001 * 109.47027 * 208.29284 * 9 8 6 13 13 N 1.46497 * 109.47399 * 55.38366 * 12 9 8 14 14 C 1.46496 * 120.00237 * 264.57893 * 13 12 9 15 15 C 1.36941 * 119.99543 * 84.58471 * 13 12 9 16 16 H 1.07999 * 120.00042 * 352.43059 * 15 13 12 17 17 C 1.38809 * 119.99657 * 172.71174 * 15 13 12 18 18 N 1.31614 * 120.00464 * 5.49979 * 17 15 13 19 19 Si 1.86803 * 119.99795 * 185.49956 * 17 15 13 20 20 H 1.48497 * 109.47262 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47217 * 119.99957 * 19 17 15 22 22 H 1.48500 * 109.47038 * 239.99796 * 19 17 15 23 23 N 1.34491 * 125.41855 * 179.97438 * 2 1 3 24 24 C 1.46506 * 126.47001 * 0.02562 * 23 2 1 25 25 H 1.08995 * 109.47865 * 270.03167 * 1 2 3 26 26 H 1.09005 * 109.47156 * 30.03151 * 1 2 3 27 27 H 1.08997 * 109.47034 * 150.02298 * 1 2 3 28 28 H 1.08005 * 126.10859 * 180.27128 * 4 3 2 29 29 H 0.96994 * 120.00532 * 4.67345 * 8 6 5 30 30 H 1.08996 * 109.47187 * 59.99773 * 11 9 8 31 31 H 1.09001 * 109.47143 * 180.02562 * 11 9 8 32 32 H 1.09003 * 109.47256 * 300.00157 * 11 9 8 33 33 H 1.08997 * 109.46543 * 295.38519 * 12 9 8 34 34 H 1.08999 * 109.46988 * 175.38947 * 12 9 8 35 35 H 1.08997 * 109.47187 * 243.95734 * 14 13 12 36 36 H 1.08995 * 109.46922 * 3.96316 * 14 13 12 37 37 H 1.09002 * 109.47050 * 123.95993 * 14 13 12 38 38 H 0.96997 * 120.00372 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.46796 * 274.03371 * 24 23 2 40 40 H 1.08997 * 109.47545 * 34.03586 * 24 23 2 41 41 H 1.09001 * 109.46720 * 154.04013 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5485 0.7049 0.0057 5 6 3.5975 -0.6609 0.0010 6 6 4.8028 -1.4983 0.0024 7 8 4.7039 -2.7071 -0.0952 8 7 6.0192 -0.9284 0.1116 9 6 7.2261 -1.7527 0.0103 10 1 7.0199 -2.7486 0.4026 11 6 7.6491 -1.8597 -1.4562 12 6 8.3530 -1.1087 0.8205 13 7 7.9073 -0.9056 2.2011 14 6 7.3580 0.3893 2.6105 15 6 8.0043 -1.9261 3.1091 16 1 8.2932 -2.9141 2.7821 17 6 7.7257 -1.6921 4.4486 18 7 7.2645 -0.5199 4.8299 19 14 8.0053 -3.0411 5.7102 20 1 8.5243 -4.2549 5.0303 21 1 8.9917 -2.5784 6.7192 22 1 6.7216 -3.3624 6.3841 23 7 2.2864 -1.0960 0.0005 24 6 1.8310 -2.4885 0.0006 25 1 -0.3635 0.0006 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 4.3978 1.3721 0.0113 29 1 6.0957 0.0275 0.2572 30 1 7.8552 -0.8639 -1.8484 31 1 8.5468 -2.4733 -1.5316 32 1 6.8463 -2.3185 -2.0334 33 1 8.6150 -0.1477 0.3781 34 1 9.2253 -1.7622 0.8127 35 1 8.0077 0.8386 3.3615 36 1 7.2948 1.0475 1.7440 37 1 6.3626 0.2453 3.0307 38 1 7.0702 -0.3562 5.7660 39 1 1.6490 -2.8111 1.0257 40 1 0.9088 -2.5693 -0.5749 41 1 2.5964 -3.1211 -0.4489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498367543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:29 Heat of formation + Delta-G solvation = 29.107321 kcal Electronic energy + Delta-G solvation = -22723.896828 eV Core-core repulsion = 19447.096036 eV Total energy + Delta-G solvation = -3276.800792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -43.27756 -40.49434 -38.07082 -35.97605 -35.04063 -33.44708 -32.73056 -31.62341 -28.62999 -28.04448 -27.68005 -27.36260 -24.40283 -23.27279 -22.07096 -21.34423 -20.74417 -18.91467 -18.65714 -17.36465 -17.16864 -17.01490 -16.64877 -15.83227 -15.50500 -15.26428 -15.01497 -14.90301 -14.52899 -14.21088 -14.18603 -13.75611 -13.72207 -13.47406 -13.27502 -13.13277 -13.09238 -12.86144 -12.74675 -12.56161 -12.22619 -11.99073 -11.83321 -11.67645 -11.41697 -10.90376 -10.74372 -10.65313 -10.08225 -9.46849 -8.87330 -7.75161 -5.17586 0.27833 1.41918 1.43193 1.48392 1.52459 1.77161 2.30941 2.43446 2.50228 3.32964 3.40278 3.65827 3.73648 3.86578 3.97861 4.16663 4.25655 4.34606 4.40524 4.50358 4.54468 4.70039 4.72967 4.77664 4.84333 4.88415 5.01235 5.02963 5.11546 5.20508 5.36678 5.44100 5.55960 5.62630 5.65362 5.90741 6.08201 6.32366 6.53508 6.85989 7.19124 7.21437 7.92911 8.27751 9.22348 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.005391 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.620855 B = 5192.663239 C = 5786.612122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.226 3.774 3 N -0.524 5.524 4 C 0.040 3.960 5 C -0.111 4.111 6 C 0.590 3.410 7 O -0.589 6.589 8 N -0.682 5.682 9 C 0.122 3.878 10 H 0.049 0.951 11 C -0.145 4.145 12 C 0.143 3.857 13 N -0.621 5.621 14 C 0.190 3.810 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.061 4.061 18 N -0.943 5.943 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.301 1.301 23 N -0.432 5.432 24 C 0.062 3.938 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.193 0.807 29 H 0.405 0.595 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.010 0.990 36 H 0.031 0.969 37 H 0.008 0.992 38 H 0.241 0.759 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 0.818 -13.911 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 N -0.244 5.244 4 C -0.115 4.115 5 C -0.227 4.227 6 C 0.378 3.622 7 O -0.472 6.472 8 N -0.331 5.331 9 C 0.015 3.985 10 H 0.067 0.933 11 C -0.204 4.204 12 C 0.016 3.984 13 N -0.344 5.344 14 C 0.045 3.955 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.254 4.254 18 N -0.593 5.593 19 Si 0.792 3.208 20 H -0.194 1.194 21 H -0.216 1.216 22 H -0.228 1.228 23 N -0.113 5.113 24 C -0.079 4.079 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.210 0.790 29 H 0.241 0.759 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.028 0.972 36 H 0.049 0.951 37 H 0.026 0.974 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.428 0.615 -13.833 17.334 hybrid contribution 0.558 -1.154 1.362 1.870 sum -9.870 -0.539 -12.472 15.914 Atomic orbital electron populations 1.20503 0.80933 1.06017 1.05165 1.24369 0.97680 0.80491 1.01093 1.70109 1.02362 1.29245 1.22660 1.22923 0.95821 0.91281 1.01434 1.20798 0.85886 0.95285 1.20727 1.16985 0.83023 0.86263 0.75940 1.90688 1.87265 1.15457 1.53822 1.45449 1.04409 1.12119 1.71091 1.21800 0.85199 0.94739 0.96744 0.93297 1.22022 1.01484 1.03179 0.93724 1.21318 0.94010 1.00017 0.83031 1.44201 1.72905 1.10881 1.06447 1.20678 0.96503 0.84328 0.93942 1.19593 1.38353 0.90863 0.88529 0.90990 1.25548 1.01933 0.98899 0.99038 1.70411 1.51375 1.22884 1.14678 0.85249 0.76684 0.79252 0.79639 1.19351 1.21583 1.22828 1.45284 1.04693 1.09442 1.51833 1.22445 1.03195 0.77532 1.04727 0.88577 0.87820 0.87907 0.78993 0.75904 0.90478 0.90073 0.93959 0.90358 0.91641 0.97151 0.95094 0.97363 0.94892 0.90140 0.85523 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.18 71.23 0.73 -0.25 16 2 C 0.23 5.88 7.88 138.20 1.09 6.97 16 3 N -0.52 -16.24 11.20 -187.39 -2.10 -18.34 16 4 C 0.04 1.25 11.36 84.10 0.96 2.21 16 5 C -0.11 -3.76 6.91 40.01 0.28 -3.48 16 6 C 0.59 22.47 7.78 86.47 0.67 23.14 16 7 O -0.59 -25.50 14.36 -4.28 -0.06 -25.56 16 8 N -0.68 -23.65 4.53 -446.41 -2.02 -25.68 16 9 C 0.12 4.23 2.93 44.99 0.13 4.37 16 10 H 0.05 2.10 7.41 -2.38 -0.02 2.08 16 11 C -0.15 -3.77 9.51 71.98 0.68 -3.09 16 12 C 0.14 5.17 5.25 86.38 0.45 5.63 16 13 N -0.62 -29.83 2.74 -726.97 -1.99 -31.82 16 14 C 0.19 9.13 8.16 127.77 1.04 10.18 16 15 C -0.24 -13.38 9.81 84.03 0.82 -12.56 16 16 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 17 C -0.06 -3.50 5.46 84.86 0.46 -3.04 16 18 N -0.94 -56.48 9.46 21.65 0.20 -56.27 16 19 Si 0.96 46.79 29.56 68.60 2.03 48.82 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 23 N -0.43 -12.49 3.17 -524.93 -1.67 -14.16 16 24 C 0.06 1.40 10.58 127.77 1.35 2.75 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.10 0.89 7.11 -2.39 -0.02 0.87 16 28 H 0.19 5.03 7.50 -2.91 -0.02 5.01 16 29 H 0.40 12.68 6.35 -92.71 -0.59 12.09 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 2.36 7.84 -2.39 -0.02 2.35 16 34 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 35 H 0.01 0.54 7.01 -2.39 -0.02 0.53 16 36 H 0.03 1.18 7.08 -2.39 -0.02 1.16 16 37 H 0.01 0.43 7.09 -2.39 -0.02 0.41 16 38 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.13 1.65 7.15 -2.39 -0.02 1.63 16 41 H 0.09 2.40 6.19 -2.39 -0.01 2.38 16 Total: -1.00 -75.88 335.95 3.51 -72.37 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.45 Total: 17.81 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 8.67 Total: 32.82 kcal Atomic # 7 Polarization: -138.69 SS G_CDS: -7.58 Total: -146.26 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.56 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -75.88 3.51 -72.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498367543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.481 kcal (2) G-P(sol) polarization free energy of solvation -75.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds