Wall clock time and date at job start Tue Mar 31 2020 01:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47604 * 2 1 4 4 N 1.30448 * 125.98706 * 269.97775 * 3 2 1 5 5 N 1.39938 * 108.89066 * 179.76251 * 4 3 2 6 6 H 0.97006 * 125.75100 * 180.27353 * 5 4 3 7 7 C 1.34255 * 108.49406 * 0.42440 * 5 4 3 8 8 C 1.38038 * 107.41849 * 359.58558 * 7 5 4 9 9 C 1.47425 * 126.41604 * 180.25978 * 8 7 5 10 10 O 1.21612 * 120.00156 * 143.64475 * 9 8 7 11 11 N 1.34771 * 120.00157 * 323.64638 * 9 8 7 12 12 C 1.46503 * 120.00001 * 4.66958 * 11 9 8 13 13 C 1.46502 * 120.00258 * 184.67714 * 11 9 8 14 14 C 1.52998 * 109.47651 * 89.99415 * 13 11 9 15 15 H 1.09007 * 109.46817 * 64.99860 * 14 13 11 16 16 C 1.52993 * 109.47411 * 184.99953 * 14 13 11 17 17 N 1.46496 * 109.47235 * 305.00680 * 14 13 11 18 18 C 1.36932 * 120.00265 * 154.99848 * 17 14 13 19 19 H 1.07999 * 120.00426 * 359.97438 * 18 17 14 20 20 C 1.38810 * 119.99920 * 179.97438 * 18 17 14 21 21 N 1.31621 * 120.00301 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47087 * 89.99845 * 22 20 18 24 24 H 1.48496 * 109.47386 * 210.00219 * 22 20 18 25 25 H 1.48503 * 109.46735 * 329.99959 * 22 20 18 26 26 H 1.08997 * 109.46853 * 59.99960 * 1 2 3 27 27 H 1.09003 * 109.47383 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47019 * 299.99905 * 1 2 3 29 29 H 1.09005 * 109.46853 * 239.99605 * 2 1 3 30 30 H 1.09003 * 109.47124 * 120.00392 * 2 1 3 31 31 H 1.08000 * 126.28928 * 179.84209 * 7 5 4 32 32 H 1.09001 * 109.46844 * 84.86506 * 12 11 9 33 33 H 1.08996 * 109.47239 * 204.86315 * 12 11 9 34 34 H 1.08997 * 109.47112 * 324.86480 * 12 11 9 35 35 H 1.09006 * 109.47060 * 209.99729 * 13 11 9 36 36 H 1.09006 * 109.47133 * 329.99121 * 13 11 9 37 37 H 1.09007 * 109.47206 * 60.00145 * 16 14 13 38 38 H 1.09004 * 109.47277 * 180.02562 * 16 14 13 39 39 H 1.09001 * 109.47535 * 300.00269 * 16 14 13 40 40 H 0.97004 * 119.99726 * 334.99524 * 17 14 13 41 41 H 0.97001 * 120.00432 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2884 2.1433 -1.0555 5 7 2.7290 3.4061 -0.6441 6 1 2.9824 4.1366 -1.2300 7 6 2.7452 3.4352 0.6980 8 6 2.3092 2.2035 1.1433 9 6 2.1602 1.7834 2.5485 10 8 1.2405 1.0563 2.8716 11 7 3.0432 2.2052 3.4752 12 6 4.0900 3.1619 3.1076 13 6 2.9563 1.7071 4.8502 14 6 3.8046 0.4414 4.9888 15 1 4.8552 0.6899 4.8379 16 6 3.6158 -0.1486 6.3877 17 7 3.3860 -0.5395 3.9844 18 6 4.2647 -1.4982 3.5557 19 1 5.2665 -1.5311 3.9577 20 6 3.8677 -2.4280 2.6045 21 7 2.6469 -2.3878 2.1142 22 14 5.0667 -3.7354 2.0191 23 1 4.9483 -4.9378 2.8826 24 1 4.7528 -4.1017 0.6147 25 1 6.4521 -3.2060 2.0948 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.0407 4.2703 1.3158 32 1 3.6945 4.1756 3.1713 33 1 4.9336 3.0575 3.7899 34 1 4.4209 2.9644 2.0880 35 1 3.3255 2.4690 5.5367 36 1 1.9178 1.4763 5.0881 37 1 2.5653 -0.3971 6.5385 38 1 4.2206 -1.0500 6.4865 39 1 3.9274 0.5813 7.1349 40 1 2.4862 -0.5099 3.6232 41 1 2.3694 -3.0377 1.4498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507095548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:17 Heat of formation + Delta-G solvation = 27.510311 kcal Electronic energy + Delta-G solvation = -23515.611813 eV Core-core repulsion = 20238.741770 eV Total energy + Delta-G solvation = -3276.870043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.36336 -40.22694 -37.39622 -35.94310 -34.95056 -33.84563 -31.43323 -31.19036 -30.30706 -28.05938 -26.80927 -25.57357 -24.90791 -23.35434 -21.63718 -20.89368 -20.07233 -19.17985 -18.51007 -17.37178 -16.94026 -16.47060 -16.31410 -15.76132 -15.51150 -15.47278 -14.93859 -14.66541 -14.31032 -14.05243 -13.80639 -13.65314 -13.36653 -13.24285 -13.05314 -12.85372 -12.80022 -12.66019 -12.35257 -12.29231 -12.12848 -12.00267 -11.73149 -11.57148 -11.45533 -10.84098 -10.62223 -10.39150 -9.64540 -9.29190 -8.77004 -7.72512 -5.00736 0.74645 1.28563 1.47209 1.47939 1.55250 1.89481 2.22672 2.63048 2.69819 3.53046 3.59518 3.83359 4.02381 4.26277 4.27804 4.29141 4.44034 4.55798 4.59152 4.61235 4.65544 4.73277 4.78899 4.82392 4.85077 5.00002 5.05360 5.13137 5.15947 5.32820 5.37791 5.42055 5.56282 5.61797 5.76790 5.91617 6.41070 6.45866 6.61335 6.76583 7.51128 7.60974 8.36624 8.61269 9.46457 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.008434 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.815962 B = 3319.224685 C = 4503.847010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.064 4.064 3 C 0.125 3.875 4 N -0.331 5.331 5 N -0.448 5.448 6 H 0.460 0.540 7 C 0.125 3.875 8 C -0.308 4.308 9 C 0.592 3.408 10 O -0.569 6.569 11 N -0.607 5.607 12 C 0.070 3.930 13 C 0.117 3.883 14 C 0.144 3.856 15 H 0.045 0.955 16 C -0.153 4.153 17 N -0.734 5.734 18 C -0.235 4.235 19 H 0.064 0.936 20 C -0.067 4.067 21 N -0.939 5.939 22 Si 0.953 3.047 23 H -0.294 1.294 24 H -0.300 1.300 25 H -0.276 1.276 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.237 0.763 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.385 0.615 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 18.667 0.039 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.103 4.103 3 C -0.041 4.041 4 N -0.154 5.154 5 N -0.155 5.155 6 H 0.309 0.691 7 C -0.028 4.028 8 C -0.323 4.323 9 C 0.381 3.619 10 O -0.448 6.448 11 N -0.339 5.339 12 C -0.072 4.072 13 C -0.006 4.006 14 C 0.034 3.966 15 H 0.063 0.937 16 C -0.214 4.214 17 N -0.378 5.378 18 C -0.368 4.368 19 H 0.082 0.918 20 C -0.260 4.260 21 N -0.590 5.590 22 Si 0.785 3.215 23 H -0.222 1.222 24 H -0.227 1.227 25 H -0.202 1.202 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.253 0.747 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.221 0.779 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.375 18.259 -1.105 18.446 hybrid contribution 0.432 -1.172 0.003 1.249 sum 2.807 17.087 -1.101 17.351 Atomic orbital electron populations 1.21398 0.93529 1.01543 1.00921 1.20192 0.97131 0.88890 1.04121 1.22435 0.95127 0.96768 0.89793 1.77034 1.23719 0.92266 1.22400 1.46043 1.51133 1.12399 1.05900 0.69148 1.23816 0.95073 0.98452 0.85484 1.20382 1.20394 0.97577 0.93940 1.17491 0.81310 0.78714 0.84363 1.90717 1.34654 1.38033 1.81371 1.47517 1.31185 1.45520 1.09641 1.22216 0.90665 0.92231 1.02086 1.21778 1.00468 0.95856 0.82506 1.20969 0.96954 0.89485 0.89166 0.93732 1.22251 1.00301 1.00703 0.98117 1.42860 1.14533 1.33265 1.47158 1.19468 0.94391 1.06276 1.16664 0.91759 1.25325 0.97920 1.01703 1.01065 1.69794 1.17884 1.38071 1.33204 0.85442 0.79102 0.80236 0.76748 1.22187 1.22690 1.20166 0.92510 0.92456 0.93451 0.92610 0.88047 0.74695 0.88921 0.89853 0.91771 0.86191 0.92318 0.94673 0.94855 0.90200 0.77890 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 9.90 71.98 0.71 -3.92 16 2 C -0.06 -2.87 5.95 29.85 0.18 -2.69 16 3 C 0.13 4.98 6.51 43.51 0.28 5.27 16 4 N -0.33 -11.23 12.63 -46.68 -0.59 -11.82 16 5 N -0.45 -9.81 7.29 -56.32 -0.41 -10.22 16 6 H 0.46 5.54 8.96 -213.42 -1.91 3.62 16 7 C 0.12 2.72 9.72 84.28 0.82 3.54 16 8 C -0.31 -10.83 5.42 -20.15 -0.11 -10.94 16 9 C 0.59 23.57 6.56 86.66 0.57 24.14 16 10 O -0.57 -28.00 13.39 -4.07 -0.05 -28.05 16 11 N -0.61 -19.14 2.77 -850.65 -2.36 -21.50 16 12 C 0.07 1.37 9.01 127.77 1.15 2.52 16 13 C 0.12 3.71 5.13 86.38 0.44 4.16 16 14 C 0.14 5.62 3.19 44.99 0.14 5.76 16 15 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16 16 C -0.15 -5.39 9.49 71.98 0.68 -4.70 16 17 N -0.73 -38.24 4.52 -322.96 -1.46 -39.70 16 18 C -0.24 -13.41 9.93 84.03 0.83 -12.58 16 19 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.94 -58.04 11.45 21.65 0.25 -57.79 16 22 Si 0.95 47.94 29.55 68.60 2.03 49.96 16 23 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 24 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 2.02 7.66 -2.39 -0.02 2.00 16 29 H 0.06 2.45 8.14 -2.38 -0.02 2.44 16 30 H 0.10 5.50 5.99 -2.39 -0.01 5.48 16 31 H 0.24 2.35 6.18 -2.91 -0.02 2.33 16 32 H 0.09 0.98 7.33 -2.39 -0.02 0.96 16 33 H 0.08 1.43 8.03 -2.39 -0.02 1.41 16 34 H 0.06 1.34 5.83 -2.39 -0.01 1.33 16 35 H 0.12 2.55 8.07 -2.38 -0.02 2.53 16 36 H 0.06 2.14 7.36 -2.38 -0.02 2.13 16 37 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.39 22.24 5.22 -92.71 -0.48 21.76 16 41 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -81.28 332.93 2.23 -79.05 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -1.34 Total: 32.96 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 6.17 Total: 7.11 kcal Atomic # 7 Polarization: -136.45 SS G_CDS: -4.57 Total: -141.03 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.96 kcal Total: -81.28 2.23 -79.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507095548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.557 kcal (2) G-P(sol) polarization free energy of solvation -81.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds