Wall clock time and date at job start Tue Mar 31 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47364 * 2 1 4 4 N 1.46491 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.34265 * 125.75223 * 124.99977 * 4 3 2 6 6 C 1.38043 * 107.41711 * 179.97438 * 5 4 3 7 7 C 1.47428 * 126.41193 * 179.97438 * 6 5 4 8 8 O 1.21603 * 120.00273 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99767 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99987 * 179.72021 * 9 7 6 11 11 C 1.52998 * 109.47249 * 180.27471 * 10 9 7 12 12 N 1.46499 * 109.47045 * 179.97438 * 11 10 9 13 13 C 1.46492 * 120.00329 * 270.00106 * 12 11 10 14 14 C 1.36941 * 119.99786 * 90.00509 * 12 11 10 15 15 H 1.08004 * 119.99550 * 22.34052 * 14 12 11 16 16 C 1.38806 * 120.00132 * 202.34643 * 14 12 11 17 17 N 1.31628 * 119.99820 * 11.33895 * 16 14 12 18 18 Si 1.86793 * 120.00078 * 191.34509 * 16 14 12 19 19 H 1.48502 * 109.47514 * 89.99794 * 18 16 14 20 20 H 1.48503 * 109.46997 * 209.99701 * 18 16 14 21 21 H 1.48497 * 109.47248 * 329.99444 * 18 16 14 22 22 C 1.41282 * 107.17193 * 0.23938 * 6 5 4 23 23 N 1.30452 * 108.02122 * 359.59676 * 22 6 5 24 24 H 1.09000 * 109.47005 * 60.00469 * 1 2 3 25 25 H 1.09008 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47004 * 299.99760 * 1 2 3 27 27 H 1.09000 * 109.47097 * 239.99715 * 2 1 3 28 28 H 1.09008 * 109.46910 * 120.00180 * 2 1 3 29 29 H 1.08997 * 109.46355 * 59.99671 * 3 2 1 30 30 H 1.09003 * 109.46409 * 300.00188 * 3 2 1 31 31 H 1.08004 * 126.29215 * 0.02562 * 5 4 3 32 32 H 0.96994 * 120.00139 * 0.02562 * 9 7 6 33 33 H 1.08993 * 109.46957 * 300.28055 * 10 9 7 34 34 H 1.08998 * 109.46659 * 60.27784 * 10 9 7 35 35 H 1.08998 * 109.47443 * 300.00890 * 11 10 9 36 36 H 1.09005 * 109.46822 * 59.99902 * 11 10 9 37 37 H 1.09003 * 109.47248 * 94.20778 * 13 12 11 38 38 H 1.08994 * 109.47320 * 214.21479 * 13 12 11 39 39 H 1.09006 * 109.47259 * 334.21230 * 13 12 11 40 40 H 0.96997 * 119.99574 * 179.97438 * 17 16 14 41 41 H 1.08005 * 125.99350 * 179.73426 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.2898 2.0672 -0.8917 6 6 5.6000 1.8186 -0.5351 7 6 6.8043 2.3062 -1.2319 8 8 6.6935 2.9996 -2.2247 9 7 8.0280 1.9836 -0.7684 10 6 9.2248 2.4630 -1.4644 11 6 10.4735 1.9530 -0.7422 12 7 11.6701 2.4319 -1.4385 13 6 12.2629 1.6308 -2.5122 14 6 12.2346 3.6286 -1.0857 15 1 12.0522 4.0435 -0.1053 16 6 13.0411 4.3085 -1.9879 17 7 13.0867 3.9271 -3.2469 18 14 14.0618 5.7644 -1.4155 19 1 15.3941 5.2882 -0.9642 20 1 14.2324 6.7213 -2.5382 21 1 13.3705 6.4412 -0.2890 22 6 5.5708 1.0043 0.6191 23 7 4.3222 0.7917 0.9315 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9562 0.8900 30 1 1.6766 1.9562 -0.8900 31 1 3.9573 2.6567 -1.7334 32 1 8.1165 1.4302 0.0233 33 1 9.2214 2.0933 -2.4897 34 1 9.2288 3.5530 -1.4712 35 1 10.4767 2.3226 0.2831 36 1 10.4693 0.8629 -0.7353 37 1 11.8722 1.9652 -3.4733 38 1 13.3462 1.7501 -2.4989 39 1 12.0112 0.5806 -2.3633 40 1 13.6501 4.4024 -3.8775 41 1 6.4314 0.6260 1.1510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567307226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:00 Heat of formation + Delta-G solvation = 54.741243 kcal Electronic energy + Delta-G solvation = -20996.279776 eV Core-core repulsion = 17720.590555 eV Total energy + Delta-G solvation = -3275.689222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 5.24 seconds Orbital eigenvalues (eV) -41.47687 -38.80780 -35.96895 -35.72639 -34.01597 -32.02755 -31.25856 -30.36251 -28.15667 -26.65569 -25.81548 -23.65759 -22.68486 -22.04294 -20.86280 -20.50244 -19.72709 -17.94320 -16.70599 -16.18555 -15.78794 -15.44080 -15.18991 -14.75930 -14.65610 -14.56346 -13.70665 -13.64995 -13.43351 -13.12648 -12.93015 -12.73919 -12.43024 -12.27428 -12.20083 -11.87023 -11.43861 -11.15644 -11.04210 -10.84270 -10.79374 -10.54994 -10.22641 -9.94978 -9.86414 -9.74936 -9.53770 -8.84713 -8.54126 -8.42127 -6.78248 -5.70724 -3.17846 1.47861 2.11547 2.14446 3.40778 3.46803 3.48769 3.65673 3.72614 4.07567 4.34732 4.52911 4.55094 4.61774 4.75270 4.84421 4.97815 5.12143 5.18799 5.31771 5.44579 5.49810 5.57182 5.63472 5.71856 5.74504 5.94994 6.05935 6.28901 6.35023 6.64422 6.75815 6.79189 6.83830 7.07827 7.38306 7.40769 7.75975 7.83929 7.97549 8.41043 8.67610 9.24911 9.87029 10.35180 11.34373 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042470 B = 0.002629 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.138317 B =10649.658308 C =10753.147574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.130 3.870 4 N -0.364 5.364 5 C 0.122 3.878 6 C -0.286 4.286 7 C 0.586 3.414 8 O -0.553 6.553 9 N -0.720 5.720 10 C 0.097 3.903 11 C 0.144 3.856 12 N -0.597 5.597 13 C 0.162 3.838 14 C -0.258 4.258 15 H 0.070 0.930 16 C 0.002 3.998 17 N -0.906 5.906 18 Si 0.908 3.092 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.080 3.920 23 N -0.298 5.298 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.187 0.813 32 H 0.393 0.607 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.047 0.953 39 H -0.002 1.002 40 H 0.253 0.747 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.624 -8.480 7.481 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.143 5.143 5 C -0.029 4.029 6 C -0.301 4.301 7 C 0.372 3.628 8 O -0.432 6.432 9 N -0.371 5.371 10 C -0.029 4.029 11 C 0.015 3.985 12 N -0.319 5.319 13 C 0.018 3.982 14 C -0.387 4.387 15 H 0.088 0.912 16 C -0.197 4.197 17 N -0.551 5.551 18 Si 0.738 3.262 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.108 4.108 23 N -0.118 5.118 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.203 0.797 32 H 0.226 0.774 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.016 0.984 40 H 0.063 0.937 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -23.491 -8.476 7.435 26.057 hybrid contribution 1.111 1.054 -0.108 1.535 sum -22.380 -7.422 7.327 24.691 Atomic orbital electron populations 1.21715 0.94320 1.02615 1.02185 1.21809 0.96469 0.95232 1.03977 1.21914 0.73605 0.99325 1.04234 1.48560 1.06796 1.38367 1.20614 1.22992 0.90208 0.95271 0.94414 1.20433 0.93735 1.12725 1.03157 1.17277 0.82374 0.79711 0.83409 1.90775 1.86912 1.39115 1.26442 1.45950 1.05931 1.53813 1.31378 1.22488 0.83071 1.00449 0.96849 1.20999 0.85633 0.96374 0.95478 1.43925 1.25405 1.21474 1.41142 1.20844 0.97946 0.88509 0.90910 1.19234 1.25283 0.97225 0.97004 0.91183 1.25075 1.01373 0.98274 0.94943 1.70075 1.41323 1.42012 1.01706 0.86207 0.80329 0.82132 0.77576 1.21480 1.21712 1.20455 1.24093 0.95289 0.96237 0.95134 1.77100 1.01823 1.19433 1.13485 0.92334 0.91866 0.92250 0.91256 0.90243 0.89385 0.88304 0.79653 0.77382 0.92216 0.91334 0.93299 0.93970 0.95225 0.93468 0.98385 0.93664 0.79319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.14 -0.81 6.11 -26.73 -0.16 -0.98 16 3 C 0.13 0.81 6.49 -4.05 -0.03 0.79 16 4 N -0.36 -3.68 3.65 -60.81 -0.22 -3.90 16 5 C 0.12 1.39 11.25 -16.56 -0.19 1.20 16 6 C -0.29 -3.81 6.13 -105.07 -0.64 -4.45 16 7 C 0.59 9.90 7.81 -12.52 -0.10 9.80 16 8 O -0.55 -11.67 16.90 5.28 0.09 -11.59 16 9 N -0.72 -11.37 5.55 -61.38 -0.34 -11.71 16 10 C 0.10 1.94 6.00 -4.04 -0.02 1.91 16 11 C 0.14 2.86 5.82 -4.04 -0.02 2.84 16 12 N -0.60 -15.06 2.93 -181.12 -0.53 -15.59 16 13 C 0.16 4.04 9.01 59.84 0.54 4.58 16 14 C -0.26 -7.12 9.67 -15.06 -0.15 -7.27 16 15 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 16 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 17 N -0.91 -26.80 10.59 55.49 0.59 -26.21 16 18 Si 0.91 22.13 29.57 -169.99 -5.03 17.10 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.08 0.91 11.50 -16.98 -0.20 0.71 16 23 N -0.30 -3.49 12.33 30.86 0.38 -3.11 16 24 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.19 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.39 4.76 7.43 -40.82 -0.30 4.45 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 36 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 37 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 38 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 39 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.19 1.53 7.50 -52.48 -0.39 1.14 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -34.85 348.35 -6.96 -41.81 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.46 Total: -0.91 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.69 Total: 8.86 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.12 Total: -60.53 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.85 -6.96 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567307226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.549 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.24 seconds