Wall clock time and date at job start Tue Mar 31 2020 03:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47295 * 2 1 4 4 N 1.46500 * 109.46966 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99974 * 275.30246 * 4 3 2 6 6 H 1.08003 * 119.99916 * 37.58580 * 5 4 3 7 7 C 1.38811 * 120.00146 * 217.58472 * 5 4 3 8 8 N 1.31610 * 120.00217 * 21.42227 * 7 5 4 9 9 Si 1.86804 * 120.00008 * 201.42569 * 7 5 4 10 10 H 1.48501 * 109.47225 * 59.99664 * 9 7 5 11 11 H 1.48497 * 109.47328 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46980 * 299.99647 * 9 7 5 13 13 C 1.46499 * 119.99915 * 95.30882 * 4 3 2 14 14 C 1.52994 * 109.47065 * 269.99331 * 13 4 3 15 15 N 1.46502 * 109.47428 * 179.97438 * 14 13 4 16 16 C 1.34768 * 120.00441 * 180.02562 * 15 14 13 17 17 O 1.21286 * 119.99979 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00431 * 180.02562 * 16 15 14 19 19 N 1.46505 * 109.47320 * 179.97438 * 18 16 15 20 20 C 1.36874 * 126.39768 * 270.02659 * 19 18 16 21 21 C 1.34664 * 106.82085 * 179.97438 * 20 19 18 22 22 N 1.34133 * 108.01921 * 359.97438 * 21 20 19 23 23 C 1.30507 * 109.25498 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47578 * 300.00501 * 1 2 3 26 26 H 1.09001 * 109.46711 * 60.00792 * 1 2 3 27 27 H 1.08998 * 109.47375 * 239.99189 * 2 1 3 28 28 H 1.09001 * 109.46640 * 119.99760 * 2 1 3 29 29 H 1.08991 * 109.47216 * 59.99277 * 3 2 1 30 30 H 1.09001 * 109.46594 * 299.99279 * 3 2 1 31 31 H 0.97002 * 120.00630 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47086 * 149.99494 * 13 4 3 33 33 H 1.08995 * 109.47342 * 30.00144 * 13 4 3 34 34 H 1.09003 * 109.47136 * 60.00638 * 14 13 4 35 35 H 1.08995 * 109.47704 * 300.00591 * 14 13 4 36 36 H 0.97009 * 119.99678 * 0.02562 * 15 14 13 37 37 H 1.08993 * 109.47564 * 59.99539 * 18 16 15 38 38 H 1.09002 * 109.46709 * 299.99742 * 18 16 15 39 39 H 1.08007 * 126.59065 * 359.97438 * 20 19 18 40 40 H 1.07999 * 125.99654 * 180.26846 * 21 20 19 41 41 H 1.07999 * 125.64709 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8170 0.6875 1.9636 7 6 5.3612 2.0514 1.3741 8 7 5.6020 3.1239 0.6503 9 14 6.5967 1.4961 2.6605 10 1 7.0656 0.1247 2.3370 11 1 7.7548 2.4257 2.6684 12 1 5.9522 1.4961 3.9984 13 6 4.2381 1.5595 -1.2624 14 6 4.4934 0.1640 -1.8352 15 7 5.2259 0.2811 -3.0985 16 6 5.5626 -0.8271 -3.7875 17 8 5.2588 -1.9215 -3.3620 18 6 6.3166 -0.7067 -5.0868 19 7 6.5609 -2.0430 -5.6353 20 6 7.6500 -2.8349 -5.3902 21 6 7.4708 -3.9715 -6.0898 22 7 6.3036 -3.8765 -6.7439 23 6 5.7531 -2.7238 -6.4765 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8898 30 1 1.6768 1.9562 -0.8901 31 1 6.4208 3.6262 0.7849 32 1 5.1905 2.0592 -1.0847 33 1 3.6494 2.1414 -1.9715 34 1 3.5410 -0.3356 -2.0129 35 1 5.0821 -0.4178 -1.1260 36 1 5.4685 1.1564 -3.4391 37 1 7.2691 -0.2075 -4.9092 38 1 5.7279 -0.1245 -5.7958 39 1 8.4915 -2.5944 -4.7573 40 1 8.1459 -4.8141 -6.1156 41 1 4.8078 -2.3729 -6.8635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567435614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:38 Heat of formation + Delta-G solvation = 22.253502 kcal Electronic energy + Delta-G solvation = -21741.170730 eV Core-core repulsion = 18464.072734 eV Total energy + Delta-G solvation = -3277.097996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.98290 -40.62370 -38.27108 -35.82396 -34.93186 -34.62307 -32.66085 -30.62167 -30.21471 -28.23956 -27.35502 -25.09844 -22.83620 -22.33191 -22.27899 -21.88538 -21.40799 -18.98990 -18.49825 -18.14198 -17.05059 -16.73916 -16.52247 -15.94428 -15.78675 -15.67414 -15.16445 -14.86743 -14.70787 -14.52737 -14.44459 -14.27175 -14.07804 -13.37441 -13.24615 -13.06055 -12.92851 -12.65170 -12.53918 -12.25194 -12.05117 -11.89235 -11.69726 -11.50305 -11.30623 -10.99417 -10.55261 -10.48637 -10.09784 -9.43170 -8.60212 -7.88066 -5.50546 1.02764 1.43114 1.46352 1.48899 1.52337 1.75603 2.22388 2.31978 2.49618 3.19414 3.58637 3.81601 3.83444 3.87385 4.02940 4.18129 4.19811 4.32233 4.37023 4.51622 4.57640 4.66167 4.72035 4.77195 4.84499 4.97711 5.14210 5.21796 5.24793 5.28949 5.35771 5.41742 5.60362 5.64249 5.72858 5.81075 6.20373 6.42946 6.54250 7.12149 7.13097 7.19309 7.81240 8.32797 9.07528 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.004186 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.834359 B = 6686.882687 C = 7801.015306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.275 4.275 6 H 0.048 0.952 7 C -0.022 4.022 8 N -0.907 5.907 9 Si 0.948 3.052 10 H -0.288 1.288 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.145 3.855 14 C 0.121 3.879 15 N -0.704 5.704 16 C 0.487 3.513 17 O -0.586 6.586 18 C 0.094 3.906 19 N -0.447 5.447 20 C -0.050 4.050 21 C -0.057 4.057 22 N -0.537 5.537 23 C 0.184 3.816 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.255 0.745 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.025 0.975 36 H 0.418 0.582 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.193 0.807 40 H 0.181 0.819 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 -1.946 -13.038 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.405 4.405 6 H 0.066 0.934 7 C -0.220 4.220 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.214 1.214 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.018 3.982 14 C -0.006 4.006 15 N -0.357 5.357 16 C 0.273 3.727 17 O -0.465 6.465 18 C -0.031 4.031 19 N -0.130 5.130 20 C -0.183 4.183 21 C -0.203 4.203 22 N -0.256 5.256 23 C -0.099 4.099 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.255 0.745 37 H 0.173 0.827 38 H 0.185 0.815 39 H 0.210 0.790 40 H 0.198 0.802 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.227 -3.014 -13.151 13.494 hybrid contribution 1.135 0.497 1.547 1.982 sum 1.362 -2.517 -11.605 11.952 Atomic orbital electron populations 1.21656 0.94255 1.01724 1.02074 1.22015 0.96430 0.98900 1.00095 1.21041 0.83398 0.94359 0.99151 1.43833 1.00838 1.85058 1.02061 1.19104 1.06431 1.20116 0.94842 0.93424 1.25670 1.01885 0.94638 0.99852 1.70054 1.26016 1.15300 1.43671 0.85673 0.79278 0.77411 0.80051 1.21431 1.21125 1.20252 1.20947 0.99328 0.91799 0.86134 1.21913 0.94204 1.00960 0.83528 1.45861 1.57128 1.09571 1.23116 1.21546 0.79880 0.84092 0.87180 1.90773 1.56280 1.28543 1.70938 1.21992 1.05225 0.82713 0.93194 1.45184 1.17182 1.15400 1.35193 1.23115 0.94928 0.93865 1.06368 1.22621 0.96927 0.99609 1.01173 1.70231 1.09852 1.18792 1.26716 1.25497 0.99183 0.89305 0.95871 0.92434 0.92606 0.91909 0.93698 0.94574 0.94751 0.92965 0.93547 0.90631 0.93323 0.93631 0.95668 0.74470 0.82683 0.81458 0.78967 0.80163 0.75556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.13 -4.75 6.23 30.59 0.19 -4.56 16 3 C 0.15 5.78 5.72 86.38 0.49 6.28 16 4 N -0.60 -27.89 2.43 -702.03 -1.71 -29.60 16 5 C -0.27 -14.51 9.45 84.03 0.79 -13.72 16 6 H 0.05 2.59 7.92 -2.91 -0.02 2.57 16 7 C -0.02 -1.15 4.95 84.86 0.42 -0.73 16 8 N -0.91 -48.69 11.47 21.65 0.25 -48.44 16 9 Si 0.95 43.05 29.60 68.60 2.03 45.08 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 C 0.15 5.96 5.45 86.38 0.47 6.43 16 14 C 0.12 4.53 6.00 86.38 0.52 5.05 16 15 N -0.70 -18.86 5.56 -463.07 -2.57 -21.44 16 16 C 0.49 13.03 7.90 87.66 0.69 13.73 16 17 O -0.59 -22.74 16.43 -3.05 -0.05 -22.79 16 18 C 0.09 1.39 6.63 85.63 0.57 1.96 16 19 N -0.45 -9.64 2.24 -533.14 -1.19 -10.83 16 20 C -0.05 -1.14 11.58 83.09 0.96 -0.18 16 21 C -0.06 -1.47 11.87 83.52 0.99 -0.48 16 22 N -0.54 -15.65 11.25 -200.31 -2.25 -17.91 16 23 C 0.18 4.37 12.56 180.26 2.26 6.64 16 24 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.63 6.64 -2.39 -0.02 1.61 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 30 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 31 H 0.26 13.23 8.31 -92.71 -0.77 12.45 16 32 H 0.08 3.52 5.52 -2.38 -0.01 3.51 16 33 H 0.05 1.79 7.86 -2.39 -0.02 1.77 16 34 H 0.05 1.78 6.64 -2.39 -0.02 1.77 16 35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.42 8.07 8.47 -92.70 -0.79 7.29 16 37 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 41 H 0.23 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -74.47 347.00 3.81 -70.66 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.23 Total: 17.89 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 9.08 Total: 17.37 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -7.48 Total: -128.21 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -74.47 3.81 -70.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567435614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.913 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds