Wall clock time and date at job start Tue Mar 31 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46918 * 2 1 4 4 H 1.08991 * 109.47210 * 305.00551 * 3 2 1 5 5 C 1.53000 * 109.46846 * 185.00050 * 3 2 1 6 6 N 1.46499 * 109.46840 * 185.00008 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.39869 * 126.04074 * 90.02753 * 10 9 7 12 12 N 1.30832 * 108.20207 * 179.97438 * 11 10 9 13 13 N 1.40088 * 108.20617 * 359.97438 * 12 11 10 14 14 C 1.46503 * 126.03784 * 180.02562 * 13 12 11 15 15 C 1.34946 * 107.92313 * 359.76118 * 13 12 11 16 16 N 1.46504 * 109.46878 * 65.00452 * 3 2 1 17 17 C 1.36929 * 119.99940 * 274.99762 * 16 3 2 18 18 H 1.08007 * 120.00260 * 359.97438 * 17 16 3 19 19 C 1.38808 * 120.00410 * 180.02562 * 17 16 3 20 20 N 1.31625 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00548 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46871 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47349 * 119.99885 * 21 19 17 24 24 H 1.48505 * 109.47162 * 240.00080 * 21 19 17 25 25 H 1.08993 * 109.47728 * 59.99548 * 1 2 3 26 26 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47313 * 299.99451 * 1 2 3 28 28 H 1.09000 * 109.47255 * 240.00648 * 2 1 3 29 29 H 1.08994 * 109.47464 * 119.99975 * 2 1 3 30 30 H 1.09002 * 109.47398 * 305.00335 * 5 3 2 31 31 H 1.09001 * 109.47194 * 65.00515 * 5 3 2 32 32 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 33 33 H 1.09002 * 109.47152 * 300.00160 * 9 7 6 34 34 H 1.09001 * 109.46980 * 60.00059 * 9 7 6 35 35 H 1.07999 * 125.89849 * 359.97438 * 11 10 9 36 36 H 1.09003 * 109.47517 * 89.97369 * 14 13 12 37 37 H 1.08998 * 109.47022 * 209.97425 * 14 13 12 38 38 H 1.09000 * 109.47295 * 329.97469 * 14 13 12 39 39 H 1.08004 * 126.12358 * 180.24372 * 15 13 12 40 40 H 0.96996 * 120.00090 * 94.99890 * 16 3 2 41 41 H 0.96994 * 120.00251 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 4.0629 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0869 8 8 6.1633 2.1485 -0.2583 9 6 5.8981 4.4749 0.0369 10 6 7.3999 4.4769 -0.0883 11 6 8.1265 4.6106 -1.2760 12 7 9.4007 4.5658 -0.9827 13 7 9.5255 4.4025 0.4030 14 6 10.7822 4.3053 1.1497 15 6 8.2837 4.3565 0.9292 16 7 1.6524 2.0975 1.2519 17 6 0.4156 2.6734 1.3690 18 1 -0.2741 2.6453 0.5383 19 6 0.0486 3.2944 2.5549 20 7 0.8892 3.3292 3.5671 21 14 -1.6389 4.0795 2.7149 22 1 -2.3885 3.9045 1.4450 23 1 -2.3838 3.4304 3.8235 24 1 -1.4855 5.5282 3.0030 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9954 0.8311 0.6658 31 1 3.8498 1.0378 -1.0961 32 1 3.4409 3.5484 0.1316 33 1 5.4671 5.0886 -0.7541 34 1 5.6135 4.8809 1.0076 35 1 7.7079 4.7302 -2.2643 36 1 11.1021 5.3018 1.4541 37 1 10.6323 3.6859 2.0340 38 1 11.5472 3.8557 0.5166 39 1 8.0392 4.2412 1.9748 40 1 2.2719 2.1231 1.9978 41 1 0.6326 3.7628 4.3960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567952013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:03 Heat of formation + Delta-G solvation = 43.487509 kcal Electronic energy + Delta-G solvation = -21542.474647 eV Core-core repulsion = 18266.297427 eV Total energy + Delta-G solvation = -3276.177220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 10.84 seconds Orbital eigenvalues (eV) -41.18924 -39.09150 -36.65664 -33.65896 -33.54415 -32.37882 -31.68116 -29.76841 -28.70112 -27.54539 -25.67678 -23.63642 -22.47290 -21.08613 -20.60809 -20.07980 -19.46990 -17.38294 -16.85428 -16.49387 -15.44481 -15.38128 -15.28375 -14.73551 -14.36028 -14.05363 -13.57984 -13.41285 -13.15148 -13.02103 -12.98731 -12.63270 -12.60434 -12.35512 -12.12799 -11.65865 -11.36728 -10.97214 -10.90270 -10.72577 -10.57244 -10.41377 -10.18693 -9.99198 -9.55679 -9.46808 -9.38356 -8.97000 -8.51797 -8.32371 -7.03951 -5.82948 -3.11718 1.91301 2.51324 2.79766 3.10357 3.38278 3.45198 3.46860 3.84213 4.45600 4.53419 4.85098 4.96984 5.06834 5.16064 5.21494 5.36474 5.42550 5.45175 5.53503 5.58540 5.75702 5.82486 5.94399 5.97671 6.00134 6.16564 6.20559 6.44562 6.56992 6.59462 6.62639 6.66699 6.97793 7.00073 7.05790 7.24125 7.66001 7.70477 8.07160 8.34688 8.72631 9.46758 10.02211 10.38307 11.39066 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.003579 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.603580 B = 7820.511444 C = 8656.818217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.116 3.884 6 N -0.715 5.715 7 C 0.509 3.491 8 O -0.550 6.550 9 C -0.063 4.063 10 C -0.212 4.212 11 C 0.063 3.937 12 N -0.304 5.304 13 N -0.380 5.380 14 C 0.104 3.896 15 C 0.067 3.933 16 N -0.721 5.721 17 C -0.235 4.235 18 H 0.073 0.927 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.292 1.292 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.410 0.590 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.180 0.820 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.172 0.828 40 H 0.385 0.615 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.806 2.301 -5.801 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.367 5.367 7 C 0.295 3.705 8 O -0.428 6.428 9 C -0.104 4.104 10 C -0.224 4.224 11 C -0.124 4.124 12 N -0.125 5.125 13 N -0.162 5.162 14 C -0.037 4.037 15 C -0.079 4.079 16 N -0.364 5.364 17 C -0.366 4.366 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.246 0.754 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.197 0.803 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.189 0.811 40 H 0.219 0.781 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.529 1.747 -6.314 15.938 hybrid contribution -1.955 0.607 0.957 2.260 sum 12.574 2.354 -5.357 13.869 Atomic orbital electron populations 1.21770 0.95771 0.99605 1.03227 1.22071 0.96918 0.98522 0.99984 1.20563 0.90114 0.92682 0.91346 0.92877 1.21612 0.95397 0.83022 1.00841 1.46003 1.07245 1.10560 1.72923 1.20652 0.82222 0.91208 0.76468 1.90660 1.56136 1.46578 1.49423 1.19907 0.90955 0.94709 1.04798 1.19455 0.94932 1.15504 0.92514 1.23695 0.90254 0.99180 0.99243 1.77282 1.19581 1.24741 0.90919 1.48343 1.05710 1.56856 1.05313 1.21803 0.83368 1.02865 0.95699 1.22275 0.84431 1.01322 0.99844 1.42461 1.16739 1.65834 1.11326 1.19256 0.91947 1.27437 0.97960 0.90873 1.24723 0.98031 1.01654 0.96403 1.69670 1.35112 1.49071 1.03959 0.86198 0.84161 0.78868 0.77444 1.20561 1.21992 1.21942 0.94114 0.94915 0.89699 0.93883 0.92584 0.92124 0.92122 0.75409 0.88327 0.88203 0.80303 0.90980 0.89565 0.89493 0.81066 0.78105 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.16 0.34 -2.25 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.16 2.97 2.59 -67.92 -0.18 2.80 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 1.96 5.23 -4.04 -0.02 1.94 16 6 N -0.72 -11.52 5.39 -60.29 -0.32 -11.85 16 7 C 0.51 8.18 7.82 -10.98 -0.09 8.09 16 8 O -0.55 -10.81 16.03 5.56 0.09 -10.72 16 9 C -0.06 -0.78 6.19 -29.03 -0.18 -0.96 16 10 C -0.21 -2.84 4.59 -105.05 -0.48 -3.33 16 11 C 0.06 0.84 11.96 -17.37 -0.21 0.64 16 12 N -0.30 -4.38 12.58 30.62 0.39 -3.99 16 13 N -0.38 -4.70 4.01 -68.16 -0.27 -4.98 16 14 C 0.10 0.79 11.47 59.85 0.69 1.48 16 15 C 0.07 0.84 11.40 -17.22 -0.20 0.64 16 16 N -0.72 -16.11 4.51 -53.42 -0.24 -16.35 16 17 C -0.23 -5.85 7.75 -15.06 -0.12 -5.96 16 18 H 0.07 1.79 7.33 -52.48 -0.38 1.41 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -26.27 13.06 55.49 0.72 -25.55 16 21 Si 0.90 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.77 5.99 -51.92 -0.31 1.46 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.41 6.56 8.14 -40.82 -0.33 6.23 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.38 9.43 7.80 -40.82 -0.32 9.11 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -32.28 347.07 -6.52 -38.80 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.40 Total: 13.05 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.68 Total: 0.22 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.27 Total: -62.72 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.28 -6.52 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567952013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.286 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.84 seconds