Wall clock time and date at job start Tue Mar 31 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 6 6 N 1.46490 * 109.47689 * 175.00086 * 5 3 2 7 7 C 1.34778 * 120.00450 * 180.02562 * 6 5 3 8 8 O 1.21277 * 119.99660 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00409 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47423 * 179.97438 * 9 7 6 11 11 N 1.36881 * 126.59144 * 264.68979 * 10 9 7 12 12 H 0.96996 * 126.39816 * 0.02562 * 11 10 9 13 13 C 1.35043 * 107.20269 * 179.90011 * 11 10 9 14 14 N 1.30504 * 108.70025 * 0.36540 * 13 11 10 15 15 C 1.34122 * 109.25688 * 359.77354 * 14 13 11 16 16 C 1.50704 * 125.99288 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 18 18 C 1.36936 * 120.00357 * 84.99193 * 17 3 2 19 19 H 1.08005 * 119.99682 * 0.02562 * 18 17 3 20 20 C 1.38810 * 120.00266 * 180.02562 * 18 17 3 21 21 N 1.31621 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47506 * 90.00004 * 22 20 18 24 24 H 1.48504 * 109.47048 * 210.00182 * 22 20 18 25 25 H 1.48500 * 109.47191 * 329.99658 * 22 20 18 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09003 * 109.47087 * 295.00778 * 5 3 2 32 32 H 1.09009 * 109.46938 * 55.00167 * 5 3 2 33 33 H 0.97004 * 120.00027 * 0.02562 * 6 5 3 34 34 H 1.09003 * 109.47071 * 300.00711 * 9 7 6 35 35 H 1.09000 * 109.46745 * 60.00102 * 9 7 6 36 36 H 1.07999 * 125.64965 * 180.10040 * 13 11 10 37 37 H 1.09003 * 109.46880 * 270.00022 * 16 15 14 38 38 H 1.09007 * 109.46733 * 29.99283 * 16 15 14 39 39 H 1.09000 * 109.47559 * 149.99571 * 16 15 14 40 40 H 0.97001 * 120.00250 * 264.99821 * 17 3 2 41 41 H 0.96993 * 120.00113 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8166 0.0060 7 6 5.3858 3.0628 0.0859 8 8 6.1636 2.1480 0.2564 9 6 5.8984 4.4745 -0.0379 10 6 7.4003 4.4763 0.0861 11 7 8.1248 4.7058 1.2246 12 1 7.7671 4.8980 2.1055 13 6 9.4305 4.6120 0.8928 14 7 9.5203 4.3470 -0.3819 15 6 8.2877 4.2583 -0.9031 16 6 7.9542 3.9651 -2.3433 17 7 1.6525 2.0975 -1.2517 18 6 0.4157 2.6734 -1.3688 19 1 -0.2740 2.6451 -0.5381 20 6 0.0483 3.2937 -2.5550 21 7 0.8885 3.3278 -3.5676 22 14 -1.6386 4.0800 -2.7144 23 1 -1.5658 5.4995 -2.2844 24 1 -2.0840 4.0136 -4.1295 25 1 -2.6073 3.3518 -1.8560 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8499 1.0375 1.0960 32 1 3.9955 0.8310 -0.6660 33 1 3.4411 3.5483 -0.1308 34 1 5.6130 4.8810 -1.0082 35 1 5.4682 5.0879 0.7538 36 1 10.2626 4.7396 1.5694 37 1 7.8894 4.9006 -2.8989 38 1 8.7338 3.3385 -2.7765 39 1 6.9981 3.4442 -2.3961 40 1 2.2720 2.1232 -1.9977 41 1 0.6319 3.7615 -4.3963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567985509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:24 Heat of formation + Delta-G solvation = -7.017045 kcal Electronic energy + Delta-G solvation = -21882.963899 eV Core-core repulsion = 18604.596637 eV Total energy + Delta-G solvation = -3278.367262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 10.71 seconds Orbital eigenvalues (eV) -43.02449 -40.56121 -38.24735 -35.18381 -34.15552 -34.02298 -33.61366 -31.48953 -30.32978 -28.99461 -26.78755 -25.45567 -23.97544 -22.60884 -21.67386 -21.33094 -20.45989 -19.23862 -18.66434 -17.98923 -17.01893 -16.81507 -16.36535 -15.95345 -15.83513 -15.33225 -15.11148 -14.69684 -14.44640 -14.16650 -14.15425 -13.82506 -13.70088 -13.65394 -13.10603 -13.04237 -12.94292 -12.73618 -12.71332 -12.35173 -12.09658 -11.85056 -11.60966 -11.31698 -11.03297 -10.92933 -10.85298 -10.70295 -9.97303 -9.15009 -8.94278 -7.84584 -5.11470 1.04527 1.52191 1.54497 1.60686 1.68424 2.12472 2.26004 2.51654 2.62796 3.49429 3.65089 3.84266 3.91458 3.99206 4.08780 4.10253 4.40655 4.40869 4.47809 4.50113 4.58014 4.59161 4.78386 4.83352 4.89654 5.02623 5.07262 5.11793 5.15039 5.22417 5.26354 5.50965 5.60513 5.64849 5.73264 5.81545 6.35633 6.60278 6.67047 7.16334 7.30892 7.43991 8.15593 8.40647 9.38163 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.003967 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.605006 B = 7056.057884 C = 7885.745638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.061 0.939 5 C 0.124 3.876 6 N -0.709 5.709 7 C 0.510 3.490 8 O -0.581 6.581 9 C -0.059 4.059 10 C -0.010 4.010 11 N -0.553 5.553 12 H 0.434 0.566 13 C 0.194 3.806 14 N -0.537 5.537 15 C -0.014 4.014 16 C -0.067 4.067 17 N -0.727 5.727 18 C -0.216 4.216 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.966 5.966 22 Si 0.957 3.043 23 H -0.289 1.289 24 H -0.306 1.306 25 H -0.273 1.273 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.413 0.587 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.373 0.627 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 3.329 12.507 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.057 3.943 4 H 0.079 0.921 5 C -0.001 4.001 6 N -0.360 5.360 7 C 0.297 3.703 8 O -0.462 6.462 9 C -0.100 4.100 10 C -0.126 4.126 11 N -0.158 5.158 12 H 0.275 0.725 13 C -0.090 4.090 14 N -0.258 5.258 15 C -0.142 4.142 16 C -0.124 4.124 17 N -0.367 5.367 18 C -0.348 4.348 19 H 0.098 0.902 20 C -0.262 4.262 21 N -0.617 5.617 22 Si 0.788 3.212 23 H -0.216 1.216 24 H -0.234 1.234 25 H -0.198 1.198 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.249 0.751 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.205 0.795 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.804 2.624 12.218 16.520 hybrid contribution -1.857 0.705 -0.102 1.989 sum 8.948 3.329 12.116 15.425 Atomic orbital electron populations 1.21696 0.95946 1.00526 1.01835 1.22004 0.96649 0.97632 1.00892 1.20691 0.90895 0.93082 0.89598 0.92120 1.21506 0.94301 0.83178 1.01083 1.45942 1.07206 1.10468 1.72417 1.20925 0.81950 0.91683 0.75729 1.90688 1.56742 1.47763 1.50991 1.20054 0.88399 0.93898 1.07644 1.20323 0.93843 1.10909 0.87549 1.43077 1.07483 1.54165 1.11032 0.72538 1.25654 0.86822 1.02889 0.93670 1.70111 1.25322 1.21341 1.09028 1.20719 0.88958 1.07064 0.97442 1.20012 1.01074 1.01885 0.89478 1.42567 1.15792 1.66014 1.12353 1.19486 0.92551 1.25322 0.97456 0.90227 1.25326 1.00755 1.03495 0.96635 1.69795 1.36777 1.50898 1.04273 0.85385 0.81298 0.78599 0.75940 1.21609 1.23395 1.19806 0.93258 0.93105 0.93025 0.90837 0.93808 0.90562 0.93597 0.75061 0.85590 0.84940 0.73591 0.90180 0.91926 0.92282 0.79510 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.18 71.98 0.66 -4.01 16 2 C -0.13 -4.15 5.61 30.59 0.17 -3.98 16 3 C 0.17 5.61 2.59 44.99 0.12 5.73 16 4 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 5 C 0.12 3.89 5.23 86.38 0.45 4.34 16 6 N -0.71 -20.92 5.39 -463.07 -2.49 -23.42 16 7 C 0.51 15.13 7.82 87.66 0.69 15.81 16 8 O -0.58 -21.82 16.03 -3.02 -0.05 -21.87 16 9 C -0.06 -1.31 5.81 29.10 0.17 -1.14 16 10 C -0.01 -0.25 5.73 40.95 0.23 -0.01 16 11 N -0.55 -10.43 6.15 -186.49 -1.15 -11.57 16 12 H 0.43 4.85 8.96 -92.71 -0.83 4.02 16 13 C 0.19 3.94 13.04 180.26 2.35 6.29 16 14 N -0.54 -15.77 11.25 -188.31 -2.12 -17.89 16 15 C -0.01 -0.40 7.09 41.39 0.29 -0.11 16 16 C -0.07 -1.86 10.13 71.24 0.72 -1.14 16 17 N -0.73 -31.45 4.51 -322.96 -1.46 -32.91 16 18 C -0.22 -10.45 7.75 84.03 0.65 -9.80 16 19 H 0.08 3.70 7.32 -2.91 -0.02 3.68 16 20 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 21 N -0.97 -55.03 13.06 21.65 0.28 -54.75 16 22 Si 0.96 43.15 29.55 68.60 2.03 45.18 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.31 -14.44 7.11 99.48 0.71 -13.74 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H 0.05 1.97 5.99 -2.39 -0.01 1.96 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.41 12.00 8.14 -92.71 -0.75 11.25 16 34 H 0.13 2.64 8.04 -2.39 -0.02 2.62 16 35 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.25 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.06 1.72 7.89 -2.39 -0.02 1.70 16 40 H 0.37 18.11 7.80 -92.71 -0.72 17.39 16 41 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -70.12 344.63 0.77 -69.35 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -1.25 Total: 39.09 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.98 Total: 8.79 kcal Atomic # 7 Polarization: -133.60 SS G_CDS: -6.93 Total: -140.53 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -70.12 0.77 -69.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567985509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.334 kcal (2) G-P(sol) polarization free energy of solvation -70.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.71 seconds