Wall clock time and date at job start Tue Mar 31 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47075 * 180.02562 * 9 7 6 11 11 N 1.36885 * 126.59109 * 264.68718 * 10 9 7 12 12 H 0.96996 * 126.39280 * 359.97438 * 11 10 9 13 13 C 1.35042 * 107.20547 * 179.90139 * 11 10 9 14 14 N 1.30505 * 108.69680 * 0.36715 * 13 11 10 15 15 C 1.34123 * 109.25861 * 359.76787 * 14 13 11 16 16 C 1.50704 * 125.98870 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 18 18 C 1.36935 * 120.00239 * 275.00034 * 17 3 2 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 3 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 3 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 30 30 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 31 31 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 32 32 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 33 33 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 34 34 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 35 35 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 36 36 H 1.07998 * 125.65038 * 180.10712 * 13 11 10 37 37 H 1.08997 * 109.47197 * 270.00701 * 16 15 14 38 38 H 1.09000 * 109.46423 * 30.00692 * 16 15 14 39 39 H 1.08997 * 109.46660 * 150.00165 * 16 15 14 40 40 H 0.97004 * 119.99747 * 95.00774 * 17 3 2 41 41 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.3999 4.4767 -0.0884 11 7 8.3044 4.4511 0.9388 12 1 8.0986 4.4286 1.8864 13 6 9.5366 4.4614 0.3863 14 7 9.4126 4.4997 -0.9122 15 6 8.1101 4.5099 -1.2321 16 6 7.5411 4.5518 -2.6270 17 7 1.6524 2.0974 1.2518 18 6 0.4156 2.6734 1.3688 19 1 -0.2743 2.6446 0.5384 20 6 0.0486 3.2945 2.5548 21 7 0.8874 3.3249 3.5687 22 14 -1.6388 4.0796 2.7147 23 1 -1.5658 5.5007 2.2897 24 1 -2.6061 3.3542 1.8525 25 1 -2.0861 4.0083 4.1289 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9954 0.8311 0.6659 32 1 3.8498 1.0377 -1.0961 33 1 3.4410 3.5483 0.1315 34 1 5.4672 5.0884 -0.7542 35 1 5.6136 4.8809 1.0075 36 1 10.4700 4.4453 0.9293 37 1 7.4045 5.5891 -2.9327 38 1 8.2278 4.0578 -3.3144 39 1 6.5796 4.0387 -2.6426 40 1 2.2720 2.1231 1.9978 41 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567985510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:50 Heat of formation + Delta-G solvation = 15.044627 kcal Electronic energy + Delta-G solvation = -21887.919677 eV Core-core repulsion = 18610.509081 eV Total energy + Delta-G solvation = -3277.410596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 7.35 seconds Orbital eigenvalues (eV) -42.13414 -39.37485 -36.88653 -33.87366 -33.12422 -32.83463 -32.52688 -29.78475 -29.09510 -27.59356 -25.76958 -23.59749 -22.65881 -21.69694 -20.48060 -20.11849 -19.47141 -17.86047 -17.54041 -16.92817 -15.73134 -15.55615 -15.07976 -14.91665 -14.38000 -14.22045 -13.69697 -13.44875 -13.24188 -13.11309 -13.00466 -12.80523 -12.77378 -12.30464 -12.12623 -11.91488 -11.64536 -11.04161 -10.85986 -10.60575 -10.40103 -10.17112 -10.00567 -9.97337 -9.91747 -9.66547 -9.28105 -9.02354 -8.76224 -8.22262 -7.17154 -6.19650 -3.21282 1.95584 2.80506 3.03041 3.10703 3.44665 3.47939 3.57886 3.62432 4.49117 4.56830 4.69599 4.92415 5.08363 5.23928 5.29173 5.30482 5.32935 5.38348 5.47623 5.71621 5.77990 5.85196 5.85838 5.92650 5.98051 6.04063 6.16739 6.26825 6.43135 6.46815 6.51067 6.74318 6.76979 6.90185 7.16333 7.33900 7.72114 7.79614 8.04696 8.44377 8.64271 9.09091 9.96029 10.11061 11.27404 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.003875 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.613195 B = 7223.498896 C = 7992.667046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.055 0.945 5 C 0.115 3.885 6 N -0.714 5.714 7 C 0.508 3.492 8 O -0.541 6.541 9 C -0.068 4.068 10 C 0.000 4.000 11 N -0.562 5.562 12 H 0.419 0.581 13 C 0.184 3.816 14 N -0.493 5.493 15 C 0.016 3.984 16 C -0.067 4.067 17 N -0.733 5.733 18 C -0.328 4.328 19 H 0.068 0.932 20 C -0.043 4.043 21 N -0.943 5.943 22 Si 1.078 2.922 23 H -0.296 1.296 24 H -0.294 1.294 25 H -0.289 1.289 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.410 0.590 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.207 0.793 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.367 0.633 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 2.450 -7.098 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.366 5.366 7 C 0.293 3.707 8 O -0.419 6.419 9 C -0.109 4.109 10 C -0.115 4.115 11 N -0.165 5.165 12 H 0.256 0.744 13 C -0.099 4.099 14 N -0.213 5.213 15 C -0.113 4.113 16 C -0.125 4.125 17 N -0.376 5.376 18 C -0.458 4.458 19 H 0.086 0.914 20 C -0.241 4.241 21 N -0.588 5.588 22 Si 0.909 3.091 23 H -0.224 1.224 24 H -0.221 1.221 25 H -0.215 1.215 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.246 0.754 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.223 0.777 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.200 0.800 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.977 2.645 -6.982 12.462 hybrid contribution 0.168 -0.687 0.496 0.864 sum 10.145 1.957 -6.486 12.200 Atomic orbital electron populations 1.21760 0.95536 0.99637 1.03357 1.22057 0.97147 0.98260 0.99966 1.20505 0.89804 0.92767 0.91066 0.92656 1.21677 0.95566 0.82623 1.01138 1.45980 1.06993 1.10802 1.72799 1.20418 0.82529 0.90689 0.77025 1.90712 1.55991 1.46233 1.48956 1.20047 0.89158 0.96015 1.05689 1.20210 0.91353 1.11770 0.88199 1.43134 1.07200 1.56592 1.09586 0.74375 1.24824 0.89000 1.05887 0.90213 1.70141 1.19207 1.19928 1.12062 1.20393 0.89021 1.06804 0.95081 1.20019 1.00205 1.01717 0.90516 1.42466 1.16818 1.67052 1.11283 1.20042 0.92624 1.32195 1.00981 0.91366 1.25699 1.05680 1.00435 0.92245 1.70867 1.08439 1.47523 1.31975 0.83248 0.74409 0.75750 0.75662 1.22356 1.22111 1.21504 0.89643 0.94061 0.94853 0.93744 0.92755 0.92112 0.91733 0.75387 0.86649 0.87998 0.77680 0.91547 0.91204 0.91547 0.79957 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.15 0.34 -2.24 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.17 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 5 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.71 -10.91 5.39 -60.29 -0.32 -11.23 16 7 C 0.51 7.76 7.82 -10.99 -0.09 7.67 16 8 O -0.54 -10.24 16.03 5.55 0.09 -10.15 16 9 C -0.07 -0.80 5.81 -29.03 -0.17 -0.97 16 10 C 0.00 0.01 5.73 -81.60 -0.47 -0.46 16 11 N -0.56 -6.24 6.15 -10.30 -0.06 -6.30 16 12 H 0.42 3.43 8.96 -40.82 -0.37 3.07 16 13 C 0.18 2.10 13.04 -90.37 -1.18 0.92 16 14 N -0.49 -7.25 11.25 -10.87 -0.12 -7.37 16 15 C 0.02 0.23 7.09 -82.85 -0.59 -0.36 16 16 C -0.07 -0.80 10.13 36.01 0.36 -0.44 16 17 N -0.73 -15.99 4.50 -53.43 -0.24 -16.23 16 18 C -0.33 -8.13 7.75 -15.06 -0.12 -8.24 16 19 H 0.07 1.69 7.32 -52.48 -0.38 1.30 16 20 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 21 N -0.94 -27.06 13.70 55.49 0.76 -26.30 16 22 Si 1.08 24.30 29.92 -169.99 -5.09 19.21 16 23 H -0.30 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.08 1.80 5.99 -51.93 -0.31 1.49 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.41 6.24 8.14 -40.82 -0.33 5.91 16 34 H 0.12 1.12 8.03 -51.93 -0.42 0.70 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.21 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 40 H 0.37 8.54 6.63 -40.82 -0.27 8.27 16 41 H 0.25 7.21 6.77 -40.82 -0.28 6.94 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -32.92 342.93 -8.37 -41.29 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -6.21 Total: 15.00 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.34 Total: -3.07 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: 0.01 Total: -67.44 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.09 Total: 19.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.92 -8.37 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567985510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.334 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.35 seconds