Wall clock time and date at job start Tue Mar 31 2020 02:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47075 * 180.02562 * 9 7 6 11 11 N 1.36885 * 126.59109 * 264.68718 * 10 9 7 12 12 H 0.96996 * 126.39280 * 359.97438 * 11 10 9 13 13 C 1.35042 * 107.20547 * 179.90139 * 11 10 9 14 14 N 1.30505 * 108.69680 * 0.36715 * 13 11 10 15 15 C 1.34123 * 109.25861 * 359.76787 * 14 13 11 16 16 C 1.50704 * 125.98870 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 18 18 C 1.36935 * 120.00239 * 275.00034 * 17 3 2 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 3 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 3 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 30 30 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 31 31 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 32 32 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 33 33 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 34 34 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 35 35 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 36 36 H 1.07998 * 125.65038 * 180.10712 * 13 11 10 37 37 H 1.08997 * 109.47197 * 270.00701 * 16 15 14 38 38 H 1.09000 * 109.46423 * 30.00692 * 16 15 14 39 39 H 1.08997 * 109.46660 * 150.00165 * 16 15 14 40 40 H 0.97004 * 119.99747 * 95.00774 * 17 3 2 41 41 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.3999 4.4767 -0.0884 11 7 8.3044 4.4511 0.9388 12 1 8.0986 4.4286 1.8864 13 6 9.5366 4.4614 0.3863 14 7 9.4126 4.4997 -0.9122 15 6 8.1101 4.5099 -1.2321 16 6 7.5411 4.5518 -2.6270 17 7 1.6524 2.0974 1.2518 18 6 0.4156 2.6734 1.3688 19 1 -0.2743 2.6446 0.5384 20 6 0.0486 3.2945 2.5548 21 7 0.8874 3.3249 3.5687 22 14 -1.6388 4.0796 2.7147 23 1 -1.5658 5.5007 2.2897 24 1 -2.6061 3.3542 1.8525 25 1 -2.0861 4.0083 4.1289 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9954 0.8311 0.6659 32 1 3.8498 1.0377 -1.0961 33 1 3.4410 3.5483 0.1315 34 1 5.4672 5.0884 -0.7542 35 1 5.6136 4.8809 1.0075 36 1 10.4700 4.4453 0.9293 37 1 7.4045 5.5891 -2.9327 38 1 8.2278 4.0578 -3.3144 39 1 6.5796 4.0387 -2.6426 40 1 2.2720 2.1231 1.9978 41 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567985510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:41 Heat of formation + Delta-G solvation = -7.477610 kcal Electronic energy + Delta-G solvation = -21888.896314 eV Core-core repulsion = 18610.509081 eV Total energy + Delta-G solvation = -3278.387233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 3.78 seconds Orbital eigenvalues (eV) -43.05926 -40.64733 -38.42211 -35.39755 -34.35067 -34.04616 -33.66859 -31.36801 -30.29958 -28.94892 -26.78968 -25.39463 -24.09042 -22.64748 -21.81887 -21.42910 -20.49331 -19.44184 -18.76533 -18.13514 -17.06512 -16.84338 -16.34254 -16.16553 -15.82787 -15.49057 -15.33995 -14.76711 -14.54269 -14.35181 -14.17340 -13.78891 -13.68918 -13.65326 -13.23105 -13.07748 -13.02850 -12.69199 -12.58255 -12.09607 -11.96996 -11.82617 -11.55415 -11.17735 -11.09257 -10.97057 -10.87070 -10.74761 -10.07128 -9.18104 -9.05659 -8.25491 -5.20999 1.01066 1.60839 1.63912 1.72016 1.85260 2.07563 2.22142 2.44899 2.76042 3.50070 3.60330 3.73006 3.80322 3.87176 4.02208 4.06030 4.28272 4.38638 4.40668 4.44028 4.48405 4.51794 4.69046 4.78291 4.84422 5.00067 5.02114 5.05773 5.07178 5.14103 5.23526 5.41417 5.50248 5.64595 5.75001 5.80375 6.52261 6.58590 6.60099 7.12050 7.16029 7.22445 8.06512 8.18976 9.25090 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.003875 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.613195 B = 7223.498896 C = 7992.667046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.171 3.829 4 H 0.058 0.942 5 C 0.124 3.876 6 N -0.711 5.711 7 C 0.510 3.490 8 O -0.580 6.580 9 C -0.059 4.059 10 C -0.015 4.015 11 N -0.558 5.558 12 H 0.431 0.569 13 C 0.192 3.808 14 N -0.535 5.535 15 C -0.010 4.010 16 C -0.065 4.065 17 N -0.738 5.738 18 C -0.304 4.304 19 H 0.071 0.929 20 C -0.101 4.101 21 N -0.980 5.980 22 Si 1.119 2.881 23 H -0.286 1.286 24 H -0.276 1.276 25 H -0.304 1.304 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.139 0.861 35 H 0.119 0.881 36 H 0.246 0.754 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.358 0.642 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.809 2.732 -8.032 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.062 3.938 4 H 0.076 0.924 5 C -0.001 4.001 6 N -0.362 5.362 7 C 0.297 3.703 8 O -0.460 6.460 9 C -0.100 4.100 10 C -0.131 4.131 11 N -0.162 5.162 12 H 0.271 0.729 13 C -0.092 4.092 14 N -0.255 5.255 15 C -0.138 4.138 16 C -0.123 4.123 17 N -0.380 5.380 18 C -0.436 4.436 19 H 0.089 0.911 20 C -0.293 4.293 21 N -0.629 5.629 22 Si 0.946 3.054 23 H -0.213 1.213 24 H -0.202 1.202 25 H -0.231 1.231 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.262 0.738 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.191 0.809 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.803 2.917 -7.956 12.958 hybrid contribution 0.281 -0.860 0.720 1.156 sum 10.084 2.057 -7.236 12.581 Atomic orbital electron populations 1.21682 0.95867 1.00537 1.01808 1.21997 0.96747 0.97485 1.00899 1.20626 0.90892 0.93024 0.89211 0.92352 1.21514 0.94152 0.83212 1.01238 1.45957 1.07271 1.10379 1.72629 1.20958 0.81898 0.91723 0.75680 1.90695 1.56752 1.47777 1.50745 1.20059 0.88552 0.93848 1.07525 1.20376 0.92016 1.12212 0.88505 1.43177 1.06916 1.55964 1.10103 0.72861 1.25635 0.90287 1.03526 0.89752 1.70130 1.19675 1.21840 1.13896 1.20823 0.89397 1.07374 0.96256 1.20041 0.99793 1.02739 0.89700 1.42570 1.15832 1.67258 1.12372 1.20258 0.93236 1.29769 1.00302 0.91087 1.26771 1.07954 1.02018 0.92550 1.70969 1.08679 1.50006 1.33283 0.82692 0.71865 0.75815 0.74993 1.21322 1.20190 1.23078 0.93337 0.93214 0.92890 0.90724 0.93857 0.93510 0.90484 0.75183 0.84351 0.86249 0.73836 0.89829 0.91831 0.91636 0.80939 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.18 71.98 0.66 -4.08 16 2 C -0.13 -4.20 5.61 30.59 0.17 -4.03 16 3 C 0.17 5.87 2.59 44.99 0.12 5.99 16 4 H 0.06 2.01 8.08 -2.38 -0.02 1.99 16 5 C 0.12 3.88 5.23 86.38 0.45 4.33 16 6 N -0.71 -20.92 5.39 -463.06 -2.49 -23.41 16 7 C 0.51 15.04 7.82 87.66 0.69 15.72 16 8 O -0.58 -21.61 16.03 -3.05 -0.05 -21.66 16 9 C -0.06 -1.30 5.81 29.10 0.17 -1.13 16 10 C -0.01 -0.37 5.73 40.95 0.23 -0.14 16 11 N -0.56 -11.52 6.15 -186.49 -1.15 -12.66 16 12 H 0.43 6.34 8.96 -92.71 -0.83 5.51 16 13 C 0.19 4.06 13.04 180.26 2.35 6.41 16 14 N -0.53 -15.28 11.25 -188.31 -2.12 -17.40 16 15 C -0.01 -0.28 7.09 41.39 0.29 0.02 16 16 C -0.06 -1.52 10.13 71.24 0.72 -0.80 16 17 N -0.74 -31.85 4.50 -322.94 -1.45 -33.30 16 18 C -0.30 -14.87 7.75 84.03 0.65 -14.22 16 19 H 0.07 3.41 7.32 -2.91 -0.02 3.39 16 20 C -0.10 -5.36 5.50 84.86 0.47 -4.90 16 21 N -0.98 -56.96 13.70 21.65 0.30 -56.66 16 22 Si 1.12 48.70 29.92 68.60 2.05 50.76 16 23 H -0.29 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 26 H 0.05 1.98 5.99 -2.38 -0.01 1.97 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.41 12.01 8.14 -92.71 -0.75 11.26 16 34 H 0.14 2.38 8.03 -2.39 -0.02 2.36 16 35 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.25 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.49 7.89 -2.39 -0.02 1.47 16 40 H 0.36 16.80 6.63 -92.71 -0.61 16.19 16 41 H 0.24 14.10 6.77 -92.71 -0.63 13.47 16 Total: -1.00 -71.01 342.93 1.06 -69.95 By element: Atomic # 1 Polarization: 42.22 SS G_CDS: -1.00 Total: 41.22 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.98 Total: 3.18 kcal Atomic # 7 Polarization: -136.52 SS G_CDS: -6.92 Total: -143.44 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.05 Total: 50.76 kcal Total: -71.01 1.06 -69.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567985510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.470 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.78 seconds