Wall clock time and date at job start Tue Mar 31 2020 03:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47109 * 2 1 4 4 N 1.46503 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.34258 * 125.75601 * 124.99558 * 4 3 2 6 6 C 1.38042 * 107.41526 * 180.02562 * 5 4 3 7 7 C 1.47432 * 126.41038 * 179.97438 * 6 5 4 8 8 O 1.21603 * 120.00137 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99549 * 180.27735 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72679 * 9 7 6 11 11 H 1.09000 * 109.46989 * 324.99747 * 10 9 7 12 12 C 1.52996 * 109.47130 * 85.00158 * 10 9 7 13 13 C 1.52998 * 109.47085 * 205.00369 * 10 9 7 14 14 N 1.46504 * 109.47491 * 54.99943 * 13 10 9 15 15 C 1.36932 * 120.00237 * 180.02562 * 14 13 10 16 16 H 1.07998 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00205 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99539 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00443 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46884 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47364 * 119.99837 * 19 17 15 22 22 H 1.48502 * 109.47297 * 240.00406 * 19 17 15 23 23 C 1.41292 * 107.17430 * 0.23377 * 6 5 4 24 24 N 1.30447 * 108.01922 * 359.61188 * 23 6 5 25 25 H 1.09001 * 109.46706 * 300.00020 * 1 2 3 26 26 H 1.09002 * 109.47102 * 59.99984 * 1 2 3 27 27 H 1.08989 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46706 * 239.99979 * 2 1 3 29 29 H 1.09002 * 109.47102 * 120.00016 * 2 1 3 30 30 H 1.08993 * 109.47080 * 60.00341 * 3 2 1 31 31 H 1.09002 * 109.47151 * 299.99986 * 3 2 1 32 32 H 1.07999 * 126.29104 * 0.02647 * 5 4 3 33 33 H 0.97000 * 120.00483 * 359.73112 * 9 7 6 34 34 H 1.09003 * 109.47061 * 180.02562 * 12 10 9 35 35 H 1.08998 * 109.47099 * 300.00036 * 12 10 9 36 36 H 1.09002 * 109.46807 * 60.00065 * 12 10 9 37 37 H 1.08995 * 109.47293 * 174.99915 * 13 10 9 38 38 H 1.09008 * 109.47363 * 294.99955 * 13 10 9 39 39 H 0.97000 * 119.99826 * 0.02562 * 14 13 10 40 40 H 0.96997 * 119.99513 * 179.97438 * 18 17 15 41 41 H 1.07995 * 125.98736 * 179.77019 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.2892 2.0675 -0.8934 6 6 5.5997 1.8179 -0.5385 7 6 6.8034 2.3054 -1.2364 8 8 6.6917 3.0003 -2.2280 9 7 8.0275 1.9766 -0.7781 10 6 9.2236 2.4560 -1.4751 11 1 9.0309 2.4880 -2.5475 12 6 9.5754 3.8595 -0.9779 13 6 10.3914 1.5081 -1.1950 14 7 10.0102 0.1418 -1.5613 15 6 10.9010 -0.8851 -1.3969 16 1 11.8848 -0.6877 -0.9975 17 6 10.5396 -2.1797 -1.7435 18 7 9.3407 -2.4201 -2.2307 19 14 11.7550 -3.5804 -1.5198 20 1 13.0243 -3.0499 -0.9607 21 1 11.1852 -4.5862 -0.5878 22 1 12.0222 -4.2186 -2.8339 23 6 5.5714 1.0027 0.6153 24 7 4.3231 0.7904 0.9288 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9560 2.6572 -1.7346 33 1 8.1166 1.4225 0.0130 34 1 10.4651 4.2164 -1.4968 35 1 8.7434 4.5348 -1.1775 36 1 9.7681 3.8274 0.0945 37 1 11.2567 1.8138 -1.7830 38 1 10.6419 1.5435 -0.1346 39 1 9.1267 -0.0354 -1.9204 40 1 9.0883 -3.3247 -2.4732 41 1 6.4323 0.6242 1.1460 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569082403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:35 Heat of formation + Delta-G solvation = 38.107361 kcal Electronic energy + Delta-G solvation = -21536.453551 eV Core-core repulsion = 18260.043030 eV Total energy + Delta-G solvation = -3276.410521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.29474 -38.97501 -36.01332 -35.55829 -33.55520 -31.99765 -31.17735 -30.25886 -29.51599 -26.64981 -25.61334 -23.17297 -22.50643 -22.34715 -20.74519 -20.34052 -19.68552 -17.90197 -17.02823 -16.03924 -15.77762 -15.61808 -14.99343 -14.68148 -14.52341 -14.17822 -13.68902 -13.60358 -13.39405 -13.20504 -12.76634 -12.58614 -12.31935 -12.23672 -12.13846 -12.00736 -11.70970 -11.52757 -11.25797 -10.87490 -10.85327 -10.79705 -10.38666 -9.98515 -9.70959 -9.54679 -9.46772 -8.88747 -8.72529 -8.41879 -6.91836 -5.74443 -3.04134 1.63997 2.29389 2.34946 3.44387 3.50023 3.52386 3.68807 3.84986 4.22622 4.50609 4.60329 4.70511 4.79001 4.90531 5.01032 5.12029 5.26931 5.29578 5.39882 5.49948 5.57389 5.58788 5.65817 5.72415 5.74240 5.87726 5.91875 6.09901 6.17727 6.26343 6.47013 6.50452 6.55994 6.78103 6.82475 7.07533 7.58551 7.71695 8.05703 8.43268 8.73242 9.55160 10.12088 10.47572 11.47767 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.004173 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.389927 B = 6708.876055 C = 8235.201157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.132 3.868 4 N -0.365 5.365 5 C 0.121 3.879 6 C -0.284 4.284 7 C 0.596 3.404 8 O -0.562 6.562 9 N -0.706 5.706 10 C 0.135 3.865 11 H 0.086 0.914 12 C -0.157 4.157 13 C 0.144 3.856 14 N -0.732 5.732 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.088 3.912 24 N -0.298 5.298 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.185 0.815 33 H 0.402 0.598 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.024 0.976 39 H 0.387 0.613 40 H 0.254 0.746 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.927 10.430 6.022 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.011 3.989 4 N -0.144 5.144 5 C -0.030 4.030 6 C -0.299 4.299 7 C 0.383 3.617 8 O -0.442 6.442 9 N -0.356 5.356 10 C 0.031 3.969 11 H 0.105 0.895 12 C -0.216 4.216 13 C 0.016 3.984 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.100 4.100 24 N -0.118 5.118 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.202 0.798 33 H 0.237 0.763 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.789 10.260 6.185 19.820 hybrid contribution 0.992 -0.884 -0.266 1.355 sum -14.798 9.376 5.918 18.491 Atomic orbital electron populations 1.21707 0.94425 1.02588 1.02009 1.21821 0.96342 0.95272 1.04228 1.21879 0.73737 0.99315 1.03974 1.48558 1.06741 1.38313 1.20801 1.22921 0.90212 0.95515 0.94311 1.20323 0.93539 1.12827 1.03238 1.17189 0.82369 0.79146 0.82954 1.90721 1.87036 1.39938 1.26473 1.45739 1.04908 1.53238 1.31746 1.21210 0.84741 0.93151 0.97833 0.89547 1.22102 1.01572 0.96678 1.01224 1.20990 0.93792 0.85866 0.97785 1.42377 1.16749 1.01122 1.77421 1.19259 0.95377 0.86963 1.35641 0.91115 1.24751 0.96840 0.97445 1.01836 1.69690 1.18868 1.19948 1.49283 0.86131 0.80245 0.82648 0.77229 1.20571 1.21909 1.21925 1.24134 0.95291 0.95482 0.95103 1.77126 1.01835 1.19135 1.13687 0.92351 0.92420 0.91877 0.91094 0.90173 0.89528 0.88455 0.79795 0.76309 0.91774 0.92438 0.92627 0.94926 0.95798 0.77912 0.93595 0.79248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.14 -1.13 6.11 -26.73 -0.16 -1.30 16 3 C 0.13 1.05 6.49 -4.04 -0.03 1.02 16 4 N -0.37 -4.42 3.65 -60.81 -0.22 -4.65 16 5 C 0.12 1.58 11.25 -16.56 -0.19 1.40 16 6 C -0.28 -4.38 6.13 -105.06 -0.64 -5.02 16 7 C 0.60 10.53 7.78 -12.52 -0.10 10.43 16 8 O -0.56 -11.38 16.56 5.27 0.09 -11.29 16 9 N -0.71 -11.92 4.51 -54.88 -0.25 -12.16 16 10 C 0.14 2.35 2.73 -67.93 -0.19 2.16 16 11 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 12 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16 13 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 14 N -0.73 -18.33 5.43 -59.91 -0.33 -18.66 16 15 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 19 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 C 0.09 1.27 11.50 -16.98 -0.20 1.08 16 24 N -0.30 -4.30 12.33 30.86 0.38 -3.92 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.37 8.14 -51.94 -0.42 -0.06 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.19 1.95 8.06 -52.49 -0.42 1.52 16 33 H 0.40 6.39 7.56 -40.82 -0.31 6.08 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 39 H 0.39 10.41 7.33 -40.82 -0.30 10.11 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.19 2.39 7.50 -52.49 -0.39 1.99 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -34.24 350.90 -6.82 -41.06 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.43 Total: 11.54 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.05 Total: 2.92 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: 0.31 Total: -66.91 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.24 -6.82 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569082403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.170 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds