Wall clock time and date at job start Tue Mar 31 2020 02:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 119.99915 * 2 1 4 4 C 1.53000 * 109.47031 * 269.72638 * 3 2 1 5 5 C 1.53002 * 109.47044 * 299.99985 * 4 3 2 6 6 C 1.52995 * 109.47388 * 59.99852 * 4 3 2 7 7 C 1.53000 * 109.46990 * 179.97438 * 4 3 2 8 8 N 1.46500 * 109.46750 * 179.97438 * 7 4 3 9 9 C 1.36938 * 119.99816 * 180.02562 * 8 7 4 10 10 H 1.08007 * 119.99783 * 359.97438 * 9 8 7 11 11 C 1.38808 * 120.00374 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00588 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99720 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47073 * 90.00234 * 13 11 9 15 15 H 1.48497 * 109.47161 * 210.00125 * 13 11 9 16 16 H 1.48497 * 109.47344 * 330.00376 * 13 11 9 17 17 C 1.34778 * 119.99912 * 179.72279 * 2 1 3 18 18 O 1.21604 * 119.99931 * 176.57561 * 17 2 1 19 19 C 1.47411 * 119.99777 * 356.57703 * 17 2 1 20 20 N 1.31614 * 125.86822 * 5.54497 * 19 17 2 21 21 C 1.33097 * 109.09510 * 179.83125 * 20 19 17 22 22 C 1.35567 * 108.35305 * 0.43063 * 21 20 19 23 23 N 1.35401 * 107.15450 * 359.74213 * 22 21 20 24 24 H 0.97001 * 126.43367 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.47147 * 95.73722 * 1 2 3 26 26 H 1.09003 * 109.47096 * 215.72966 * 1 2 3 27 27 H 1.08997 * 109.46859 * 335.73057 * 1 2 3 28 28 H 1.09001 * 109.47241 * 29.72505 * 3 2 1 29 29 H 1.09003 * 109.47242 * 149.72229 * 3 2 1 30 30 H 1.09003 * 109.47138 * 59.99573 * 5 4 3 31 31 H 1.08994 * 109.47369 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46779 * 300.00133 * 5 4 3 33 33 H 1.09001 * 109.46917 * 60.00113 * 6 4 3 34 34 H 1.09003 * 109.47511 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.47450 * 300.00165 * 6 4 3 36 36 H 1.09001 * 109.47268 * 299.99858 * 7 4 3 37 37 H 1.08996 * 109.46831 * 60.00125 * 7 4 3 38 38 H 0.97000 * 120.00561 * 0.02562 * 8 7 4 39 39 H 0.96996 * 120.00329 * 179.97438 * 12 11 9 40 40 H 1.08001 * 125.82304 * 180.20747 * 21 20 19 41 41 H 1.07992 * 126.42330 * 179.77448 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4585 1.7069 -1.4425 5 6 3.2884 0.6389 -2.1577 6 6 1.1247 1.8881 -2.1697 7 6 3.2229 3.0323 -1.4425 8 7 3.4733 3.4515 -2.8237 9 6 4.1476 4.6168 -3.0740 10 1 4.4944 5.2270 -2.2530 11 6 4.3844 5.0144 -4.3826 12 7 5.0329 6.1342 -4.6232 13 14 3.7839 3.9594 -5.8025 14 1 2.4120 4.3795 -6.1856 15 1 4.6950 4.1264 -6.9631 16 1 3.7671 2.5338 -5.3873 17 6 2.1390 -1.1672 0.0056 18 8 3.3534 -1.1685 -0.0573 19 6 1.4038 -2.4423 0.0880 20 7 0.0954 -2.5814 0.0574 21 6 -0.2073 -3.8741 0.1515 22 6 0.9476 -4.5765 0.2545 23 7 1.9637 -3.6825 0.2153 24 1 2.9110 -3.8843 0.2680 25 1 -0.3633 -0.1027 -1.0225 26 1 -0.3633 -0.8343 0.6001 27 1 -0.3633 0.9368 0.4224 28 1 1.6064 2.0296 0.5096 29 1 3.1478 1.1397 0.5181 30 1 2.7434 -0.3051 -2.1577 31 1 3.4747 0.9512 -3.1852 32 1 4.2387 0.5098 -1.6396 33 1 0.5335 2.6490 -1.6602 34 1 1.3106 2.1998 -3.1976 35 1 0.5796 0.9441 -2.1698 36 1 2.6313 3.7930 -0.9331 37 1 4.1732 2.9036 -0.9243 38 1 3.1615 2.9037 -3.5610 39 1 5.1987 6.4118 -5.5377 40 1 -1.2033 -4.2918 0.1500 41 1 1.0399 -5.6483 0.3494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570674106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:03 Heat of formation + Delta-G solvation = 53.022388 kcal Electronic energy + Delta-G solvation = -22577.119734 eV Core-core repulsion = 19301.355977 eV Total energy + Delta-G solvation = -3275.763757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 8.03 seconds Orbital eigenvalues (eV) -42.56529 -39.98287 -37.38546 -35.33795 -33.30256 -32.78307 -30.78883 -30.02392 -27.78668 -26.87723 -26.06982 -25.68896 -23.17791 -21.88462 -21.84433 -20.34436 -18.64105 -18.19435 -17.56818 -16.66615 -16.23606 -15.94246 -15.06960 -14.56091 -14.35555 -14.26501 -14.10916 -13.86941 -13.37620 -13.31798 -13.07529 -12.84541 -12.60023 -12.26741 -12.21592 -11.34658 -11.30007 -11.20515 -10.84199 -10.73703 -10.59733 -10.48008 -10.33762 -10.31557 -10.09050 -9.87020 -9.52044 -8.97781 -8.83262 -8.56811 -7.14491 -5.71210 -3.05135 1.10757 2.30931 2.32417 3.17094 3.23596 3.41254 3.44552 3.48713 3.99090 4.55702 4.64449 4.84582 5.02148 5.06458 5.06990 5.18840 5.39277 5.48825 5.57863 5.64196 5.70466 5.74884 5.83786 5.91871 5.93305 6.12969 6.18878 6.26743 6.36136 6.45095 6.57708 6.63620 6.70823 6.78761 6.81250 6.89007 7.19040 7.45530 7.98107 8.06437 8.48504 9.28324 10.00990 10.21760 11.47614 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.003863 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.338947 B = 7247.133687 C = 7362.264932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.582 5.582 3 C 0.129 3.871 4 C -0.090 4.090 5 C -0.125 4.125 6 C -0.139 4.139 7 C 0.171 3.829 8 N -0.752 5.752 9 C -0.239 4.239 10 H 0.090 0.910 11 C 0.003 3.997 12 N -0.936 5.936 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 C 0.598 3.402 18 O -0.534 6.534 19 C 0.154 3.846 20 N -0.440 5.440 21 C -0.033 4.033 22 C -0.027 4.027 23 N -0.525 5.525 24 H 0.431 0.569 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.178 0.822 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.134 -22.418 12.517 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.313 5.313 3 C 0.007 3.993 4 C -0.092 4.092 5 C -0.182 4.182 6 C -0.196 4.196 7 C 0.043 3.957 8 N -0.398 5.398 9 C -0.369 4.369 10 H 0.108 0.892 11 C -0.192 4.192 12 N -0.585 5.585 13 Si 0.711 3.289 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.383 3.617 18 O -0.410 6.410 19 C -0.107 4.107 20 N -0.163 5.163 21 C -0.186 4.186 22 C -0.166 4.166 23 N -0.127 5.127 24 H 0.270 0.730 25 H 0.079 0.921 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.195 0.805 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.914 -21.484 12.452 27.542 hybrid contribution 0.491 -1.545 -1.158 1.992 sum -11.423 -23.029 11.295 28.078 Atomic orbital electron populations 1.22445 0.77923 1.03879 1.03326 1.47439 1.08014 1.04998 1.70816 1.21683 0.97522 0.83006 0.97121 1.21181 0.96492 0.97027 0.94482 1.21756 0.99630 0.96461 1.00370 1.21915 0.95973 1.00705 1.01019 1.20556 0.96214 0.91180 0.87778 1.42734 1.69467 1.26074 1.01548 1.19081 1.27449 0.96823 0.93530 0.89218 1.24639 1.00612 0.97172 0.96804 1.69696 1.46266 1.23166 1.19358 0.86600 0.78468 0.80425 0.83393 1.21074 1.21734 1.20381 1.16490 0.85879 0.81585 0.77772 1.90873 1.12610 1.86669 1.50857 1.22805 0.89206 0.87356 1.11374 1.70399 1.10190 1.19286 1.16443 1.22611 0.98878 0.89220 1.07849 1.22986 0.87942 0.96874 1.08847 1.42967 1.10868 1.06516 1.52357 0.73000 0.92140 0.87658 0.91570 0.89786 0.89519 0.94179 0.92903 0.92057 0.92666 0.92402 0.93020 0.95479 0.95428 0.80460 0.93144 0.80487 0.79768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 8.52 59.85 0.51 1.20 16 2 N -0.58 -7.30 2.39 -182.85 -0.44 -7.74 16 3 C 0.13 1.74 4.62 -4.04 -0.02 1.72 16 4 C -0.09 -1.47 0.60 -154.51 -0.09 -1.57 16 5 C -0.12 -2.22 6.91 37.16 0.26 -1.96 16 6 C -0.14 -2.14 7.71 37.16 0.29 -1.86 16 7 C 0.17 3.39 5.15 -4.04 -0.02 3.37 16 8 N -0.75 -18.43 4.81 -59.91 -0.29 -18.72 16 9 C -0.24 -6.95 10.47 -15.06 -0.16 -7.10 16 10 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 11 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 12 N -0.94 -30.10 13.97 55.49 0.78 -29.32 16 13 Si 0.88 22.84 27.74 -169.99 -4.71 18.13 16 14 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 16 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 17 C 0.60 8.16 6.19 -12.53 -0.08 8.08 16 18 O -0.53 -8.56 14.59 5.27 0.08 -8.48 16 19 C 0.15 1.78 7.68 -154.52 -1.19 0.59 16 20 N -0.44 -4.73 7.66 -11.26 -0.09 -4.82 16 21 C -0.03 -0.26 11.85 -17.96 -0.21 -0.48 16 22 C -0.03 -0.17 12.01 -16.93 -0.20 -0.38 16 23 N -0.53 -4.50 6.15 -10.78 -0.07 -4.56 16 24 H 0.43 2.94 8.96 -40.82 -0.37 2.57 16 25 H 0.06 0.65 6.55 -51.93 -0.34 0.31 16 26 H 0.11 1.08 5.27 -51.93 -0.27 0.81 16 27 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 28 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 29 H 0.09 1.24 7.47 -51.93 -0.39 0.85 16 30 H 0.04 0.68 6.09 -51.93 -0.32 0.36 16 31 H 0.05 1.03 6.86 -51.93 -0.36 0.68 16 32 H 0.06 1.14 7.65 -51.93 -0.40 0.75 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.02 6.86 -51.93 -0.36 0.66 16 35 H 0.05 0.71 5.46 -51.93 -0.28 0.43 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.36 8.76 3.22 -40.82 -0.13 8.63 16 39 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 40 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.19 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -35.17 322.24 -6.63 -41.80 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.73 Total: 7.24 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.01 Total: 1.62 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.10 Total: -65.16 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.17 -6.63 -41.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570674106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.821 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.03 seconds