Wall clock time and date at job start Tue Mar 31 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30855 * 125.41698 * 2 1 4 4 C 1.33326 * 109.68159 * 179.78110 * 3 2 1 5 5 C 1.36661 * 107.78540 * 0.38293 * 4 3 2 6 6 C 1.46766 * 126.84724 * 179.89307 * 5 4 3 7 7 O 1.21683 * 119.99501 * 359.68542 * 6 5 4 8 8 N 1.34773 * 120.00233 * 179.68218 * 6 5 4 9 9 C 1.46500 * 119.99910 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47297 * 34.99871 * 9 8 6 11 11 C 1.53006 * 109.46998 * 275.00232 * 9 8 6 12 12 C 1.52997 * 109.47007 * 155.00372 * 9 8 6 13 13 C 1.53001 * 109.46997 * 294.99685 * 12 9 8 14 14 C 1.52997 * 109.46997 * 179.97438 * 13 12 9 15 15 N 1.46503 * 109.47269 * 180.02562 * 14 13 12 16 16 C 1.36937 * 120.00090 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99760 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99862 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00009 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00041 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46835 * 90.00437 * 20 18 16 22 22 H 1.48501 * 109.47185 * 210.00297 * 20 18 16 23 23 H 1.48501 * 109.47243 * 330.00671 * 20 18 16 24 24 N 1.34489 * 125.41517 * 180.02562 * 2 1 3 25 25 H 0.97002 * 126.47633 * 359.97438 * 24 2 1 26 26 H 1.08995 * 109.46905 * 269.97720 * 1 2 3 27 27 H 1.09004 * 109.46693 * 29.97636 * 1 2 3 28 28 H 1.08999 * 109.47101 * 149.96943 * 1 2 3 29 29 H 1.07990 * 126.10722 * 180.28114 * 4 3 2 30 30 H 0.96995 * 119.99797 * 0.02562 * 8 6 5 31 31 H 1.09001 * 109.47002 * 179.97438 * 11 9 8 32 32 H 1.08993 * 109.46955 * 300.00226 * 11 9 8 33 33 H 1.09000 * 109.47050 * 60.00054 * 11 9 8 34 34 H 1.08993 * 109.47322 * 54.99986 * 12 9 8 35 35 H 1.09002 * 109.47196 * 175.00109 * 12 9 8 36 36 H 1.08993 * 109.47331 * 300.00296 * 13 12 9 37 37 H 1.09001 * 109.46791 * 60.00740 * 13 12 9 38 38 H 1.09006 * 109.47271 * 300.00048 * 14 13 12 39 39 H 1.09002 * 109.47196 * 60.00425 * 14 13 12 40 40 H 0.97002 * 119.99507 * 0.02562 * 15 14 13 41 41 H 0.97003 * 119.99940 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7048 0.0048 5 6 3.5976 -0.6609 -0.0007 6 6 4.8029 -1.4984 -0.0005 7 8 5.9038 -0.9802 -0.0008 8 7 4.6902 -2.8414 0.0000 9 6 5.8933 -3.6774 -0.0003 10 1 6.6724 -3.1932 0.5885 11 6 6.3831 -3.8656 -1.4376 12 6 5.5664 -5.0418 0.6099 13 6 5.1964 -4.8657 2.0840 14 6 4.8689 -6.2301 2.6941 15 7 4.5139 -6.0615 4.1054 16 6 4.1809 -7.1526 4.8627 17 1 4.1795 -8.1375 4.4195 18 6 3.8441 -6.9928 6.1998 19 7 3.5245 -8.0416 6.9279 20 14 3.8458 -5.2892 6.9662 21 1 2.5024 -4.6755 6.8115 22 1 4.1779 -5.3961 8.4097 23 1 4.8584 -4.4418 6.2868 24 7 2.2865 -1.0960 -0.0005 25 1 1.9850 -2.0180 -0.0006 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8903 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 4.3978 1.3720 0.0102 30 1 3.8126 -3.2545 -0.0001 31 1 7.2785 -4.4872 -1.4378 32 1 5.6041 -4.3497 -2.0264 33 1 6.6160 -2.8936 -1.8723 34 1 4.7275 -5.4873 0.0754 35 1 6.4362 -5.6938 0.5291 36 1 6.0353 -4.4202 2.6185 37 1 4.3265 -4.2138 2.1648 38 1 4.0297 -6.6752 2.1594 39 1 5.7384 -6.8824 2.6132 40 1 4.5149 -5.1768 4.5033 41 1 3.2895 -7.9299 7.8624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571236614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:08 Heat of formation + Delta-G solvation = 14.938499 kcal Electronic energy + Delta-G solvation = -21375.358972 eV Core-core repulsion = 18097.943774 eV Total energy + Delta-G solvation = -3277.415198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.52911 -39.77420 -36.94744 -35.11764 -33.37284 -32.57964 -32.18919 -31.17366 -29.85246 -27.70094 -25.99883 -23.74569 -22.58373 -21.54532 -21.05907 -20.74139 -20.65391 -18.92790 -17.55981 -16.57406 -16.29918 -15.99991 -14.92140 -14.87019 -14.70774 -14.27306 -14.23890 -13.96899 -13.71306 -13.63547 -13.15912 -12.95429 -12.86243 -12.67688 -12.36781 -12.29601 -11.78334 -11.37591 -11.06654 -10.97299 -10.73599 -10.60752 -10.50983 -10.48480 -10.19846 -10.14828 -9.63488 -9.39664 -8.93819 -8.77702 -7.27665 -5.81073 -3.16773 0.99646 2.48103 2.50857 2.86509 3.11539 3.33800 3.37640 3.42237 3.99162 4.42206 4.51906 4.55397 4.70578 4.86279 4.94908 4.97024 5.06953 5.20583 5.26196 5.33219 5.44243 5.46429 5.48638 5.49398 5.59449 5.76804 5.85001 5.90391 5.99627 6.04138 6.19819 6.21765 6.27991 6.67212 6.70701 6.81588 7.15707 7.59941 7.89188 7.95066 8.38221 9.17200 9.89818 10.09550 11.37377 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.004020 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.909701 B = 6963.357883 C = 8279.337655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.240 3.760 3 N -0.497 5.497 4 C 0.072 3.928 5 C -0.092 4.092 6 C 0.597 3.403 7 O -0.526 6.526 8 N -0.721 5.721 9 C 0.141 3.859 10 H 0.092 0.908 11 C -0.162 4.162 12 C -0.123 4.123 13 C -0.130 4.130 14 C 0.157 3.843 15 N -0.758 5.758 16 C -0.247 4.247 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.277 1.277 24 N -0.551 5.551 25 H 0.422 0.578 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.184 0.816 30 H 0.394 0.606 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.360 0.640 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 13.604 -19.658 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 N -0.217 5.217 4 C -0.082 4.082 5 C -0.207 4.207 6 C 0.383 3.617 7 O -0.402 6.402 8 N -0.372 5.372 9 C 0.038 3.962 10 H 0.111 0.889 11 C -0.221 4.221 12 C -0.161 4.161 13 C -0.168 4.168 14 C 0.030 3.970 15 N -0.404 5.404 16 C -0.376 4.376 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.582 5.582 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.204 1.204 24 N -0.157 5.157 25 H 0.261 0.739 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.201 0.799 30 H 0.228 0.772 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.413 14.521 -19.589 24.503 hybrid contribution -0.316 -0.421 0.761 0.926 sum -2.729 14.099 -18.828 23.680 Atomic orbital electron populations 1.20339 0.84124 1.04584 1.04348 1.23507 0.95966 0.81510 1.01368 1.70221 1.02129 1.28202 1.21137 1.22672 0.94775 0.91256 0.99474 1.21190 0.83709 0.96091 1.19735 1.16831 0.86967 0.81569 0.76329 1.90853 1.25825 1.73224 1.50276 1.46012 1.10110 1.05603 1.75447 1.21113 0.87124 0.91020 0.96978 0.88946 1.22176 1.01493 1.02344 0.96067 1.21853 1.02842 0.95242 0.96209 1.21791 1.01459 0.99086 0.94463 1.20624 0.97383 0.93674 0.85326 1.42738 1.84180 1.06476 1.06967 1.19072 1.38245 0.88302 0.92021 0.89230 1.24674 1.01452 0.96670 0.96306 1.69701 1.52747 1.27963 1.07785 0.86550 0.77790 0.85298 0.78896 1.21137 1.21576 1.20360 1.43260 1.06098 1.10315 1.56026 0.73939 0.89345 0.88609 0.90296 0.79887 0.77233 0.91237 0.92522 0.92151 0.91285 0.89782 0.91816 0.92397 0.95761 0.95566 0.80732 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.24 2.17 8.12 -155.62 -1.26 0.91 16 3 N -0.50 -5.89 11.20 -10.58 -0.12 -6.01 16 4 C 0.07 0.86 11.66 -17.47 -0.20 0.66 16 5 C -0.09 -1.01 7.08 -82.14 -0.58 -1.59 16 6 C 0.60 7.25 7.75 -12.82 -0.10 7.15 16 7 O -0.53 -8.11 16.57 5.20 0.09 -8.02 16 8 N -0.72 -7.02 4.53 -55.08 -0.25 -7.27 16 9 C 0.14 1.44 2.57 -67.93 -0.17 1.26 16 10 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 11 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 12 C -0.12 -1.26 4.75 -26.73 -0.13 -1.39 16 13 C -0.13 -1.83 5.22 -26.73 -0.14 -1.97 16 14 C 0.16 2.91 6.26 -4.04 -0.03 2.88 16 15 N -0.76 -18.09 5.41 -59.91 -0.32 -18.41 16 16 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 20 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 24 N -0.55 -4.53 6.07 -7.01 -0.04 -4.57 16 25 H 0.42 2.15 8.32 -40.82 -0.34 1.81 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.39 2.94 7.85 -40.82 -0.32 2.62 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -36.09 346.59 -7.85 -43.93 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.35 Total: 6.50 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.14 Total: -0.32 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: 0.04 Total: -64.90 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.09 -7.85 -43.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571236614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.872 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds