Wall clock time and date at job start Tue Mar 31 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30852 * 125.42057 * 2 1 4 4 C 1.33325 * 109.68519 * 179.74933 * 3 2 1 5 5 C 1.36661 * 107.78296 * 0.40064 * 4 3 2 6 6 C 1.46771 * 126.84280 * 179.87555 * 5 4 3 7 7 O 1.21683 * 119.99961 * 359.68399 * 6 5 4 8 8 N 1.34777 * 119.99972 * 179.41212 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27633 * 8 6 5 10 10 H 1.08999 * 109.46621 * 324.99673 * 9 8 6 11 11 C 1.52998 * 109.47145 * 84.99285 * 9 8 6 12 12 C 1.52995 * 109.47290 * 204.99666 * 9 8 6 13 13 C 1.53001 * 109.46766 * 64.99684 * 12 9 8 14 14 C 1.53012 * 109.46912 * 180.02562 * 13 12 9 15 15 N 1.46501 * 109.46778 * 180.02562 * 14 13 12 16 16 C 1.36940 * 119.99410 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00216 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99968 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00374 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99660 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47054 * 90.00392 * 20 18 16 22 22 H 1.48505 * 109.47168 * 209.99766 * 20 18 16 23 23 H 1.48496 * 109.47407 * 329.99981 * 20 18 16 24 24 N 1.34500 * 125.41601 * 179.97438 * 2 1 3 25 25 H 0.96999 * 126.46978 * 0.02562 * 24 2 1 26 26 H 1.08995 * 109.47175 * 270.00481 * 1 2 3 27 27 H 1.09007 * 109.46786 * 30.00224 * 1 2 3 28 28 H 1.08997 * 109.47346 * 149.99747 * 1 2 3 29 29 H 1.07995 * 126.10618 * 180.29231 * 4 3 2 30 30 H 0.97000 * 119.99736 * 0.26905 * 8 6 5 31 31 H 1.09007 * 109.46732 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.47335 * 300.00029 * 11 9 8 33 33 H 1.08999 * 109.47045 * 60.00647 * 11 9 8 34 34 H 1.09000 * 109.47218 * 184.99612 * 12 9 8 35 35 H 1.09000 * 109.47293 * 304.99778 * 12 9 8 36 36 H 1.08992 * 109.47769 * 299.99722 * 13 12 9 37 37 H 1.09005 * 109.47479 * 60.00650 * 13 12 9 38 38 H 1.09000 * 109.47132 * 299.99964 * 14 13 12 39 39 H 1.09000 * 109.46841 * 60.00412 * 14 13 12 40 40 H 0.96992 * 120.00542 * 0.02562 * 15 14 13 41 41 H 0.96998 * 120.00558 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0663 0.0000 4 6 3.5486 0.7048 0.0055 5 6 3.5975 -0.6609 0.0000 6 6 4.8028 -1.4985 0.0005 7 8 5.9037 -0.9802 0.0005 8 7 4.6901 -2.8415 0.0066 9 6 5.8932 -3.6775 0.0133 10 1 6.6731 -3.1963 -0.5768 11 6 6.3806 -3.8584 1.4522 12 6 5.5673 -5.0450 -0.5906 13 6 5.1996 -4.8763 -2.0661 14 6 4.8731 -6.2438 -2.6699 15 7 4.5217 -6.0824 -4.0829 16 6 4.1891 -7.1773 -4.8351 17 1 4.1863 -8.1599 -4.3867 18 6 3.8556 -7.0244 -6.1738 19 7 3.5364 -8.0768 -6.8969 20 14 3.8597 -5.3249 -6.9491 21 1 5.2054 -5.0392 -7.5084 22 1 2.8506 -5.2748 -8.0374 23 1 3.5265 -4.3095 -5.9180 24 7 2.2864 -1.0961 0.0005 25 1 1.9848 -2.0180 0.0006 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5139 29 1 4.3978 1.3720 0.0113 30 1 3.8125 -3.2546 0.0067 31 1 7.2760 -4.4800 1.4570 32 1 6.6128 -2.8841 1.8824 33 1 5.6006 -4.3396 2.0422 34 1 6.4370 -5.6965 -0.5050 35 1 4.7275 -5.4878 -0.0552 36 1 4.3300 -4.2249 -2.1518 37 1 6.0395 -4.4336 -2.6016 38 1 5.7425 -6.8957 -2.5843 39 1 4.0331 -6.6861 -2.1344 40 1 4.5246 -5.2000 -4.4857 41 1 3.3030 -7.9699 -7.8323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571236615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:10 Heat of formation + Delta-G solvation = -11.665181 kcal Electronic energy + Delta-G solvation = -21375.808785 eV Core-core repulsion = 18097.239965 eV Total energy + Delta-G solvation = -3278.568820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.28888 -40.68806 -38.06224 -36.68157 -34.45980 -33.84764 -33.09394 -32.42980 -31.08204 -28.35605 -27.39903 -24.84568 -24.03898 -22.59588 -22.29490 -21.60242 -21.43165 -19.73533 -19.63068 -17.47378 -17.11425 -16.78168 -16.60387 -16.00747 -15.88591 -15.65025 -15.22561 -15.02708 -14.92460 -14.57590 -14.29198 -13.95079 -13.62360 -13.54308 -13.43243 -13.25126 -13.11722 -12.87729 -12.53828 -12.14930 -12.06793 -11.90957 -11.82009 -11.58944 -11.57328 -11.27592 -11.09031 -11.00346 -10.28783 -9.55664 -9.32752 -8.06534 -5.39949 0.18182 1.34146 1.37538 1.44463 1.71539 1.77713 2.08416 2.22874 2.44349 3.25289 3.36951 3.45908 3.75395 3.84661 4.05390 4.05786 4.13579 4.26246 4.36608 4.51402 4.56887 4.60069 4.73936 4.78877 4.80713 4.82503 4.86375 4.97285 5.08984 5.10252 5.27940 5.29780 5.38601 5.43008 5.48932 5.72709 6.18217 6.21452 6.37525 6.84198 7.02562 7.04744 7.82014 7.99359 9.15077 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.004013 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.172737 B = 6975.408980 C = 8287.226446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.247 3.753 3 N -0.530 5.530 4 C 0.054 3.946 5 C -0.101 4.101 6 C 0.597 3.403 7 O -0.566 6.566 8 N -0.708 5.708 9 C 0.144 3.856 10 H 0.071 0.929 11 C -0.156 4.156 12 C -0.111 4.111 13 C -0.118 4.118 14 C 0.152 3.848 15 N -0.763 5.763 16 C -0.238 4.238 17 H 0.058 0.942 18 C -0.062 4.062 19 N -0.983 5.983 20 Si 0.954 3.046 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.254 1.254 24 N -0.538 5.538 25 H 0.437 0.563 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.181 0.819 30 H 0.408 0.592 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.024 0.976 39 H 0.031 0.969 40 H 0.364 0.636 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 14.425 20.899 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.017 4.017 3 N -0.251 5.251 4 C -0.100 4.100 5 C -0.217 4.217 6 C 0.384 3.616 7 O -0.445 6.445 8 N -0.360 5.360 9 C 0.040 3.960 10 H 0.089 0.911 11 C -0.214 4.214 12 C -0.149 4.149 13 C -0.156 4.156 14 C 0.026 3.974 15 N -0.409 5.409 16 C -0.369 4.369 17 H 0.076 0.924 18 C -0.253 4.253 19 N -0.633 5.633 20 Si 0.781 3.219 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.179 1.179 24 N -0.145 5.145 25 H 0.279 0.721 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.198 0.802 30 H 0.244 0.756 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.197 0.803 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.475 15.315 20.883 26.129 hybrid contribution -0.038 -0.732 -1.080 1.305 sum -3.513 14.583 19.803 24.843 Atomic orbital electron populations 1.20548 0.81175 1.05947 1.05609 1.24257 0.97401 0.80962 0.99092 1.70212 1.02293 1.29848 1.22752 1.22811 0.95176 0.91966 1.00089 1.20976 0.84483 0.95701 1.20567 1.16956 0.86674 0.82181 0.75794 1.90830 1.27317 1.74037 1.52318 1.45919 1.10856 1.04854 1.74329 1.21053 0.86712 0.90547 0.97668 0.91053 1.22111 1.02546 1.01863 0.94900 1.21766 1.04128 0.95426 0.93585 1.21675 1.01286 0.96159 0.96527 1.20856 0.97305 0.96444 0.82795 1.42809 1.84131 1.05238 1.08729 1.19086 1.37026 0.88441 0.92355 0.92353 1.25492 1.01991 1.00828 0.97027 1.69873 1.54803 1.30495 1.08168 0.85429 0.77531 0.80620 0.78281 1.20674 1.21954 1.17891 1.43168 1.04881 1.11145 1.55303 0.72075 0.87682 0.88518 0.87961 0.80169 0.75645 0.90060 0.93761 0.90917 0.88784 0.89186 0.91965 0.92724 0.95787 0.95130 0.80344 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 71.23 0.75 0.21 16 2 C 0.25 3.99 8.12 138.20 1.12 5.11 16 3 N -0.53 -12.23 11.20 -187.40 -2.10 -14.33 16 4 C 0.05 1.28 11.66 84.10 0.98 2.26 16 5 C -0.10 -2.15 7.08 40.01 0.28 -1.86 16 6 C 0.60 14.03 7.76 86.47 0.67 14.71 16 7 O -0.57 -17.60 16.57 -4.29 -0.07 -17.67 16 8 N -0.71 -12.35 4.53 -446.43 -2.02 -14.37 16 9 C 0.14 2.61 2.57 44.99 0.12 2.73 16 10 H 0.07 1.65 7.58 -2.39 -0.02 1.63 16 11 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 12 C -0.11 -1.92 4.75 30.59 0.15 -1.77 16 13 C -0.12 -3.02 5.22 30.60 0.16 -2.86 16 14 C 0.15 5.31 6.26 86.38 0.54 5.85 16 15 N -0.76 -35.25 5.41 -343.42 -1.86 -37.11 16 16 C -0.24 -13.57 10.47 84.03 0.88 -12.69 16 17 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 18 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 19 N -0.98 -62.88 13.97 21.65 0.30 -62.58 16 20 Si 0.95 45.60 27.73 68.60 1.90 47.50 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 24 N -0.54 -7.70 6.07 -176.12 -1.07 -8.77 16 25 H 0.44 3.15 8.32 -92.71 -0.77 2.38 16 26 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.18 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.41 4.85 7.85 -92.71 -0.73 4.12 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.54 7.75 -2.39 -0.02 1.52 16 37 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.36 16.18 5.53 -92.71 -0.51 15.67 16 41 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -79.36 346.60 0.87 -78.49 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -1.02 Total: 22.03 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.80 Total: 6.81 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -6.74 Total: -137.17 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.07 Total: -17.67 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.50 kcal Total: -79.36 0.87 -78.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571236615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.830 kcal (2) G-P(sol) polarization free energy of solvation -79.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds