Wall clock time and date at job start Tue Mar 31 2020 02:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46691 * 2 1 4 4 C 1.53001 * 109.46698 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47137 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46896 * 54.99969 * 5 4 3 7 7 N 1.46903 * 109.46938 * 295.00277 * 5 4 3 8 8 C 1.50696 * 109.47252 * 175.00297 * 5 4 3 9 9 O 1.21290 * 120.00012 * 99.99926 * 8 5 4 10 10 N 1.34777 * 119.99736 * 279.99816 * 8 5 4 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 5 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.46757 * 60.00220 * 1 2 3 26 26 H 1.08996 * 109.46900 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47369 * 300.00184 * 1 2 3 28 28 H 1.08996 * 109.47369 * 239.99816 * 2 1 3 29 29 H 1.08999 * 109.46757 * 119.99780 * 2 1 3 30 30 H 1.09005 * 109.47523 * 59.99850 * 3 2 1 31 31 H 1.08999 * 109.47341 * 299.99423 * 3 2 1 32 32 H 1.08999 * 109.47194 * 60.00533 * 4 3 2 33 33 H 1.08999 * 109.47162 * 300.00032 * 4 3 2 34 34 H 1.00897 * 111.00259 * 299.99725 * 7 5 4 35 35 H 1.00900 * 110.99971 * 63.95658 * 7 5 4 36 36 H 0.97003 * 120.00166 * 0.02562 * 10 8 5 37 37 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 38 38 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 39 39 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 40 40 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 41 41 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6450 3.4246 0.8413 7 7 3.6918 3.5411 -1.2558 8 6 5.5818 2.8870 0.1244 9 8 6.2718 3.0394 -0.8614 10 7 6.1582 2.7193 1.3311 11 6 7.5550 2.7206 1.4468 12 6 8.4696 2.8856 0.3942 13 6 9.7163 2.8318 0.9156 14 7 9.6006 2.6315 2.2453 15 6 10.7079 2.5083 3.1966 16 6 10.5385 3.5221 4.2987 17 1 9.6906 4.1910 4.2914 18 6 11.4659 3.5958 5.3162 19 7 12.4956 2.7777 5.3280 20 14 11.2556 4.8520 6.6827 21 1 12.3748 4.7232 7.6502 22 1 11.2574 6.2192 6.1028 23 1 9.9674 4.6123 7.3813 24 7 8.2367 2.5687 2.5577 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9287 -0.8891 33 1 3.9329 0.9288 0.8908 34 1 4.0830 3.0594 -2.0514 35 1 2.6881 3.6102 -1.3324 36 1 5.6064 2.5971 2.1194 37 1 8.2214 3.0342 -0.6463 38 1 10.6405 2.9295 0.3653 39 1 11.6515 2.6866 2.6809 40 1 10.7108 1.5052 3.6229 41 1 12.6048 2.1252 4.6186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577412623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:46 Heat of formation + Delta-G solvation = 23.014440 kcal Electronic energy + Delta-G solvation = -21202.828156 eV Core-core repulsion = 17925.763157 eV Total energy + Delta-G solvation = -3277.064999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80095 -39.59327 -36.96509 -34.88329 -34.14827 -33.65165 -30.93220 -29.91304 -29.37777 -27.12545 -25.89292 -23.53851 -22.74952 -21.51426 -21.16897 -20.25715 -19.54380 -17.46651 -17.19019 -16.76876 -16.03173 -15.46467 -15.31865 -15.10031 -14.43615 -14.33202 -14.16615 -13.79648 -13.65387 -13.56865 -13.11064 -12.84491 -12.46123 -12.34054 -12.10240 -11.85811 -11.57709 -11.52596 -11.34697 -11.15721 -10.98766 -10.81138 -10.44775 -10.16207 -10.04124 -9.62884 -9.01451 -8.96152 -8.58492 -8.20730 -7.52728 -6.58499 -4.32515 2.27529 2.66860 2.85262 3.37879 3.39432 3.58240 3.64066 3.74037 4.23108 4.39001 4.41416 4.46301 4.49194 4.75606 4.79811 4.88715 5.05386 5.15289 5.26242 5.28834 5.42844 5.46853 5.48170 5.63157 5.70551 5.72284 5.82915 5.91108 6.19046 6.40929 6.49596 6.59329 6.72821 6.76076 7.14698 7.34617 7.48038 7.70623 7.82911 8.23059 8.33976 8.53920 8.61832 9.35682 10.79054 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.003000 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.712556 B = 9329.984053 C = 9789.143993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.153 4.153 5 C 0.083 3.917 6 H 0.106 0.894 7 N -0.826 5.826 8 C 0.525 3.475 9 O -0.508 6.508 10 N -0.631 5.631 11 C 0.259 3.741 12 C -0.285 4.285 13 C 0.050 3.950 14 N -0.318 5.318 15 C 0.249 3.751 16 C -0.608 4.608 17 H 0.063 0.937 18 C 0.023 3.977 19 N -0.905 5.905 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.302 5.302 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.352 0.648 35 H 0.347 0.653 36 H 0.410 0.590 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.783 -3.748 -11.346 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.193 4.193 5 C -0.033 4.033 6 H 0.123 0.877 7 N -0.359 5.359 8 C 0.310 3.690 9 O -0.380 6.380 10 N -0.279 5.279 11 C 0.006 3.994 12 C -0.316 4.316 13 C -0.100 4.100 14 N -0.099 5.099 15 C 0.131 3.869 16 C -0.646 4.646 17 H 0.082 0.918 18 C -0.182 4.182 19 N -0.540 5.540 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.133 5.133 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.245 0.755 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.171 -2.630 -9.067 21.370 hybrid contribution -1.303 -1.445 -2.026 2.809 sum -20.474 -4.075 -11.093 23.640 Atomic orbital electron populations 1.21777 0.95733 1.01714 1.01832 1.21525 0.95943 0.96530 1.02322 1.21634 0.94237 0.97451 1.02341 1.22397 0.96563 0.96426 1.03926 1.21298 0.91382 0.94605 0.96004 0.87660 1.58504 1.16035 1.58170 1.03194 1.20459 0.90126 0.76089 0.82299 1.90625 1.63945 1.46545 1.36914 1.42475 1.03321 1.71483 1.10585 1.19122 0.83976 1.03092 0.93230 1.21534 0.89882 1.19324 1.00850 1.22568 0.99662 1.02196 0.85529 1.48785 1.04076 1.51213 1.05863 1.19759 0.80648 0.98808 0.87667 1.22102 1.12971 1.20122 1.09393 0.91848 1.25930 0.92346 0.99994 0.99933 1.70853 1.29024 1.19226 1.34914 0.83418 0.76163 0.74785 0.75256 1.20517 1.21218 1.21131 1.77346 0.88391 1.27997 1.19572 0.92777 0.92737 0.92640 0.92005 0.91759 0.91372 0.91914 0.90981 0.90567 0.83301 0.83802 0.75470 0.82176 0.81499 0.93622 0.94785 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.67 4.98 -26.73 -0.13 -0.81 16 4 C -0.15 -1.14 4.84 -26.73 -0.13 -1.27 16 5 C 0.08 0.77 3.21 -68.86 -0.22 0.55 16 6 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 7 N -0.83 -7.44 8.94 -5.65 -0.05 -7.49 16 8 C 0.53 7.44 7.05 -10.99 -0.08 7.37 16 9 O -0.51 -8.86 13.38 5.55 0.07 -8.79 16 10 N -0.63 -9.70 5.45 -11.13 -0.06 -9.76 16 11 C 0.26 5.26 8.11 -154.39 -1.25 4.01 16 12 C -0.28 -5.75 9.61 -39.83 -0.38 -6.13 16 13 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 14 N -0.32 -7.52 3.67 -62.56 -0.23 -7.75 16 15 C 0.25 6.36 5.57 -5.19 -0.03 6.33 16 16 C -0.61 -17.21 9.24 -34.44 -0.32 -17.53 16 17 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 19 N -0.90 -26.44 13.65 55.43 0.76 -25.68 16 20 Si 1.08 25.02 29.90 -169.99 -5.08 19.94 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 24 N -0.30 -7.06 12.42 31.44 0.39 -6.67 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.31 6.87 -51.93 -0.36 -0.05 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.35 3.29 8.58 -39.29 -0.34 2.95 16 35 H 0.35 2.18 7.55 -39.29 -0.30 1.88 16 36 H 0.41 5.10 8.82 -40.82 -0.36 4.74 16 37 H 0.16 3.14 5.92 -52.49 -0.31 2.83 16 38 H 0.17 2.78 8.06 -52.48 -0.42 2.35 16 39 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 40 H 0.03 0.90 8.00 -51.93 -0.42 0.49 16 41 H 0.27 7.62 7.22 -40.82 -0.29 7.33 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -33.75 344.12 -7.86 -41.61 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.22 Total: 6.86 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.63 Total: -7.46 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.81 Total: -57.35 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.75 -7.86 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577412623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.625 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds