Wall clock time and date at job start Tue Mar 31 2020 02:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46691 * 2 1 4 4 C 1.53001 * 109.46698 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47137 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46896 * 54.99969 * 5 4 3 7 7 N 1.46903 * 109.46938 * 295.00277 * 5 4 3 8 8 C 1.50696 * 109.47252 * 175.00297 * 5 4 3 9 9 O 1.21290 * 120.00012 * 99.99926 * 8 5 4 10 10 N 1.34777 * 119.99736 * 279.99816 * 8 5 4 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 5 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.46757 * 60.00220 * 1 2 3 26 26 H 1.08996 * 109.46900 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47369 * 300.00184 * 1 2 3 28 28 H 1.08996 * 109.47369 * 239.99816 * 2 1 3 29 29 H 1.08999 * 109.46757 * 119.99780 * 2 1 3 30 30 H 1.09005 * 109.47523 * 59.99850 * 3 2 1 31 31 H 1.08999 * 109.47341 * 299.99423 * 3 2 1 32 32 H 1.08999 * 109.47194 * 60.00533 * 4 3 2 33 33 H 1.08999 * 109.47162 * 300.00032 * 4 3 2 34 34 H 1.00897 * 111.00259 * 299.99725 * 7 5 4 35 35 H 1.00900 * 110.99971 * 63.95658 * 7 5 4 36 36 H 0.97003 * 120.00166 * 0.02562 * 10 8 5 37 37 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 38 38 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 39 39 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 40 40 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 41 41 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6450 3.4246 0.8413 7 7 3.6918 3.5411 -1.2558 8 6 5.5818 2.8870 0.1244 9 8 6.2718 3.0394 -0.8614 10 7 6.1582 2.7193 1.3311 11 6 7.5550 2.7206 1.4468 12 6 8.4696 2.8856 0.3942 13 6 9.7163 2.8318 0.9156 14 7 9.6006 2.6315 2.2453 15 6 10.7079 2.5083 3.1966 16 6 10.5385 3.5221 4.2987 17 1 9.6906 4.1910 4.2914 18 6 11.4659 3.5958 5.3162 19 7 12.4956 2.7777 5.3280 20 14 11.2556 4.8520 6.6827 21 1 12.3748 4.7232 7.6502 22 1 11.2574 6.2192 6.1028 23 1 9.9674 4.6123 7.3813 24 7 8.2367 2.5687 2.5577 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9287 -0.8891 33 1 3.9329 0.9288 0.8908 34 1 4.0830 3.0594 -2.0514 35 1 2.6881 3.6102 -1.3324 36 1 5.6064 2.5971 2.1194 37 1 8.2214 3.0342 -0.6463 38 1 10.6405 2.9295 0.3653 39 1 11.6515 2.6866 2.6809 40 1 10.7108 1.5052 3.6229 41 1 12.6048 2.1252 4.6186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577412623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:45 Heat of formation + Delta-G solvation = -0.489738 kcal Electronic energy + Delta-G solvation = -21203.847374 eV Core-core repulsion = 17925.763157 eV Total energy + Delta-G solvation = -3278.084217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.32695 -40.85761 -37.69815 -36.43359 -35.52973 -34.77434 -32.71609 -31.06067 -30.48917 -28.54751 -27.22158 -25.12713 -23.92942 -22.62971 -21.96555 -21.70309 -20.83473 -19.25066 -18.51882 -18.25313 -16.99928 -16.61002 -16.51965 -16.13142 -15.87096 -15.61928 -15.38721 -15.01933 -14.83460 -14.48979 -14.30845 -14.06824 -13.91499 -13.72049 -13.37573 -13.23381 -12.83842 -12.61819 -12.12664 -12.09135 -12.01449 -11.95691 -11.83208 -11.64892 -11.43615 -11.01601 -10.83936 -10.70174 -9.85951 -9.70092 -9.22691 -8.78864 -6.57088 0.85871 1.25868 1.38472 1.50935 1.57220 1.78989 2.14845 2.25033 2.48498 3.00143 3.42987 3.60538 3.79904 3.86694 3.95087 4.11613 4.14719 4.22871 4.37214 4.52901 4.54885 4.71813 4.76075 4.78360 4.80233 4.81140 4.97420 4.98017 5.09102 5.14737 5.28705 5.37983 5.47418 5.53839 5.80892 5.91395 6.01106 6.22849 6.25921 6.40178 6.55083 6.92113 7.07335 7.18683 8.57268 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.003000 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.712556 B = 9329.984053 C = 9789.143993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.113 4.113 4 C -0.145 4.145 5 C 0.096 3.904 6 H 0.128 0.872 7 N -0.835 5.835 8 C 0.522 3.478 9 O -0.541 6.541 10 N -0.624 5.624 11 C 0.267 3.733 12 C -0.292 4.292 13 C 0.054 3.946 14 N -0.344 5.344 15 C 0.259 3.741 16 C -0.622 4.622 17 H 0.045 0.955 18 C -0.019 4.019 19 N -0.923 5.923 20 Si 1.120 2.880 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.274 1.274 24 N -0.345 5.345 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.350 0.650 35 H 0.364 0.636 36 H 0.424 0.576 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.054 0.946 40 H 0.017 0.983 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.589 -3.018 -11.680 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.150 4.150 4 C -0.185 4.185 5 C -0.020 4.020 6 H 0.145 0.855 7 N -0.370 5.370 8 C 0.310 3.690 9 O -0.415 6.415 10 N -0.274 5.274 11 C 0.012 3.988 12 C -0.323 4.323 13 C -0.094 4.094 14 N -0.126 5.126 15 C 0.140 3.860 16 C -0.660 4.660 17 H 0.063 0.937 18 C -0.219 4.219 19 N -0.559 5.559 20 Si 0.941 3.059 21 H -0.199 1.199 22 H -0.197 1.197 23 H -0.200 1.200 24 N -0.176 5.176 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.182 0.818 36 H 0.262 0.738 37 H 0.185 0.815 38 H 0.218 0.782 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.032 -1.912 -9.426 23.126 hybrid contribution -0.827 -1.705 -2.061 2.799 sum -21.859 -3.617 -11.486 24.956 Atomic orbital electron populations 1.21771 0.95168 1.01860 1.02199 1.21527 0.96432 0.96606 1.01914 1.21598 0.92522 0.97523 1.03363 1.22334 0.97899 0.94840 1.03465 1.21284 0.87434 0.96181 0.97051 0.85469 1.58487 1.17456 1.58185 1.02851 1.21497 0.92076 0.74326 0.81129 1.90599 1.65195 1.47818 1.37861 1.42681 1.01428 1.71345 1.11984 1.19512 0.86106 1.00717 0.92426 1.21733 0.89933 1.19478 1.01137 1.23183 1.01305 1.00437 0.84457 1.48581 1.03923 1.53500 1.06570 1.19425 0.81793 0.97105 0.87668 1.22280 1.12443 1.20513 1.10729 0.93686 1.27294 0.91652 1.00994 1.01939 1.70948 1.29882 1.19932 1.35108 0.82880 0.76668 0.73336 0.73053 1.19947 1.19676 1.19969 1.77265 0.88607 1.30377 1.21308 0.92291 0.92782 0.92371 0.92395 0.92287 0.90422 0.90799 0.91833 0.90761 0.83551 0.81834 0.73833 0.81456 0.78197 0.92866 0.96511 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.13 -1.27 5.93 30.60 0.18 -1.09 16 3 C -0.11 -0.98 4.98 30.59 0.15 -0.83 16 4 C -0.15 -1.87 4.84 30.60 0.15 -1.73 16 5 C 0.10 1.56 3.21 44.17 0.14 1.70 16 6 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 7 N -0.84 -13.15 8.94 -171.79 -1.54 -14.68 16 8 C 0.52 14.09 7.05 87.66 0.62 14.71 16 9 O -0.54 -18.36 13.38 -3.06 -0.04 -18.41 16 10 N -0.62 -18.58 5.45 -307.52 -1.68 -20.25 16 11 C 0.27 10.78 8.11 133.32 1.08 11.86 16 12 C -0.29 -11.62 9.61 22.11 0.21 -11.41 16 13 C 0.05 2.19 11.44 83.52 0.96 3.14 16 14 N -0.34 -16.43 3.67 -351.83 -1.29 -17.72 16 15 C 0.26 13.49 5.57 85.64 0.48 13.97 16 16 C -0.62 -35.67 9.24 25.60 0.24 -35.44 16 17 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 18 C -0.02 -1.08 5.46 84.65 0.46 -0.61 16 19 N -0.92 -54.19 13.65 21.45 0.29 -53.89 16 20 Si 1.12 49.87 29.90 68.60 2.05 51.92 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 N -0.34 -16.27 12.42 -54.45 -0.68 -16.95 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.57 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.50 6.87 -2.39 -0.02 0.49 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.35 5.95 8.58 -89.70 -0.77 5.18 16 35 H 0.36 3.53 7.55 -89.69 -0.68 2.85 16 36 H 0.42 10.01 8.82 -92.71 -0.82 9.20 16 37 H 0.17 6.45 5.92 -2.91 -0.02 6.43 16 38 H 0.20 6.36 8.06 -2.91 -0.02 6.34 16 39 H 0.05 2.66 7.94 -2.39 -0.02 2.64 16 40 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 41 H 0.26 15.14 7.22 -92.71 -0.67 14.47 16 Total: -1.00 -72.75 344.12 1.40 -71.35 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -1.11 Total: 24.96 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.38 Total: -6.33 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -4.88 Total: -123.50 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.04 Total: -18.41 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Total: -72.75 1.40 -71.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577412623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.860 kcal (2) G-P(sol) polarization free energy of solvation -72.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds