Wall clock time and date at job start Tue Mar 31 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46897 * 111.00175 * 2 1 4 4 H 1.09007 * 109.46807 * 33.32625 * 3 2 1 5 5 C 1.52998 * 109.47776 * 153.32701 * 3 2 1 6 6 C 1.53003 * 109.46995 * 295.00417 * 5 3 2 7 7 C 1.52998 * 109.47056 * 174.99553 * 6 5 3 8 8 C 1.52999 * 109.46825 * 294.99443 * 6 5 3 9 9 C 1.50700 * 109.47045 * 273.33242 * 3 2 1 10 10 O 1.21308 * 120.00040 * 333.71553 * 9 3 2 11 11 N 1.34780 * 120.00002 * 153.72125 * 9 3 2 12 12 C 1.40595 * 119.99582 * 180.02562 * 11 9 3 13 13 C 1.40649 * 126.08799 * 359.96502 * 12 11 9 14 14 N 1.30904 * 108.38826 * 179.78178 * 13 12 11 15 15 N 1.40070 * 108.40944 * 0.38214 * 14 13 12 16 16 C 1.37319 * 126.06682 * 179.87667 * 15 14 13 17 17 H 1.08008 * 119.99793 * 179.69159 * 16 15 14 18 18 C 1.38984 * 120.00718 * 359.41629 * 16 15 14 19 19 N 1.31297 * 119.99206 * 0.27520 * 18 16 15 20 20 Si 1.86795 * 120.00370 * 180.27466 * 18 16 15 21 21 H 1.48505 * 109.47195 * 90.00306 * 20 18 16 22 22 H 1.48501 * 109.47188 * 209.99959 * 20 18 16 23 23 H 1.48493 * 109.47094 * 330.00075 * 20 18 16 24 24 C 1.35684 * 126.07850 * 179.97438 * 12 11 9 25 25 H 1.09007 * 109.46846 * 184.80124 * 1 2 3 26 26 H 1.09003 * 109.47512 * 304.79347 * 1 2 3 27 27 H 1.08993 * 109.47659 * 64.80009 * 1 2 3 28 28 H 1.00905 * 111.00613 * 123.95638 * 2 1 3 29 29 H 1.09003 * 109.46889 * 55.00209 * 5 3 2 30 30 H 1.09000 * 109.47451 * 174.99935 * 5 3 2 31 31 H 1.08992 * 109.47125 * 54.99725 * 6 5 3 32 32 H 1.09009 * 109.47015 * 59.99913 * 7 6 5 33 33 H 1.08994 * 109.47130 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47436 * 300.00575 * 7 6 5 35 35 H 1.09001 * 109.47094 * 60.00298 * 8 6 5 36 36 H 1.09001 * 109.46693 * 180.02562 * 8 6 5 37 37 H 1.08997 * 109.47370 * 300.00528 * 8 6 5 38 38 H 0.96997 * 120.00074 * 359.97438 * 11 9 3 39 39 H 1.08003 * 125.80468 * 0.02934 * 13 12 11 40 40 H 0.97007 * 119.99868 * 180.02562 * 19 18 16 41 41 H 1.07994 * 126.24585 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3239 2.0183 0.5647 5 6 3.3815 1.3857 0.6475 6 6 3.2593 0.9990 2.1228 7 6 4.6554 0.8917 2.7393 8 6 2.4548 2.0680 2.8651 9 6 2.0983 1.8699 -1.4184 10 8 2.2380 1.0816 -2.3298 11 7 2.0353 3.1917 -1.6744 12 6 2.1308 3.6567 -2.9978 13 6 2.2937 2.8607 -4.1459 14 7 2.3363 3.6475 -5.1912 15 7 2.2118 4.9721 -4.7533 16 6 2.2132 6.0905 -5.5500 17 1 2.1051 7.0695 -5.1067 18 6 2.3595 5.9633 -6.9262 19 7 2.4909 4.7733 -7.4651 20 14 2.3692 7.4853 -8.0092 21 1 3.7620 7.9790 -8.1568 22 1 1.8204 7.1449 -9.3464 23 1 1.5330 8.5420 -7.3853 24 6 2.0823 4.9533 -3.3946 25 1 -0.3633 -1.0241 0.0860 26 1 -0.3634 0.5864 0.8439 27 1 -0.3634 0.4375 -0.9298 28 1 1.8306 -0.5262 0.7813 29 1 4.0283 0.6719 0.1372 30 1 3.8094 2.3850 0.5680 31 1 2.7507 0.0386 2.2057 32 1 5.1641 1.8523 2.6563 33 1 4.5683 0.6167 3.7903 34 1 5.2286 0.1303 2.2104 35 1 1.4601 2.1444 2.4259 36 1 2.3681 1.7927 3.9163 37 1 2.9633 3.0285 2.7821 38 1 1.9233 3.8220 -0.9457 39 1 2.3667 1.7833 -4.1625 40 1 2.5933 4.6844 -8.4256 41 1 1.9633 5.8135 -2.7526 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578754023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:52 Heat of formation + Delta-G solvation = 40.751859 kcal Electronic energy + Delta-G solvation = -21937.852597 eV Core-core repulsion = 18661.556751 eV Total energy + Delta-G solvation = -3276.295847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98077 -38.98872 -37.13198 -34.67267 -33.99409 -33.05918 -30.30488 -29.81330 -27.63154 -27.45098 -25.14090 -24.79194 -23.67977 -20.92343 -20.28739 -19.65954 -19.29243 -17.51656 -16.52336 -16.23828 -15.71925 -15.39001 -14.83096 -14.49035 -14.31509 -13.98911 -13.79496 -13.57986 -13.36547 -12.97060 -12.82550 -12.61338 -12.40665 -12.18033 -11.77367 -11.74736 -11.62103 -11.35508 -11.23316 -11.03658 -10.86963 -10.84976 -10.78366 -10.50599 -10.02511 -9.12005 -9.09579 -8.74325 -8.30456 -7.99188 -6.61468 -6.50692 -4.17229 2.91960 3.07425 3.10727 3.12747 3.56916 3.73750 3.89637 4.26774 4.45660 4.59242 4.63639 4.69557 4.86616 5.00583 5.06899 5.17124 5.29647 5.34006 5.37364 5.43770 5.50879 5.53580 5.62418 5.71073 5.80687 5.92973 5.97455 6.07214 6.12594 6.29872 6.52928 6.80004 6.98296 7.06431 7.22925 7.31199 7.33492 7.92051 8.29774 8.38327 8.72044 9.03300 9.44356 9.74080 10.45424 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032209 B = 0.003431 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.125017 B = 8158.770592 C = 8525.196286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.668 5.668 3 C 0.077 3.923 4 H 0.063 0.937 5 C -0.114 4.114 6 C -0.098 4.098 7 C -0.146 4.146 8 C -0.153 4.153 9 C 0.501 3.499 10 O -0.512 6.512 11 N -0.631 5.631 12 C -0.055 4.055 13 C -0.035 4.035 14 N -0.260 5.260 15 N -0.144 5.144 16 C -0.324 4.324 17 H 0.115 0.885 18 C 0.046 3.954 19 N -0.771 5.771 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.086 4.086 25 H 0.068 0.932 26 H 0.020 0.980 27 H 0.067 0.933 28 H 0.344 0.656 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.393 0.607 39 H 0.176 0.824 40 H 0.274 0.726 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -3.516 19.004 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.302 5.302 3 C -0.036 4.036 4 H 0.080 0.920 5 C -0.153 4.153 6 C -0.117 4.117 7 C -0.204 4.204 8 C -0.210 4.210 9 C 0.285 3.715 10 O -0.386 6.386 11 N -0.275 5.275 12 C -0.161 4.161 13 C -0.210 4.210 14 N -0.092 5.092 15 N 0.088 4.912 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.397 5.397 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.189 1.189 24 C -0.237 4.237 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.165 0.835 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.225 0.775 39 H 0.192 0.808 40 H 0.085 0.915 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.259 -4.245 16.158 16.709 hybrid contribution -0.403 1.342 1.771 2.259 sum -0.662 -2.903 17.930 18.175 Atomic orbital electron populations 1.22266 0.87374 1.01650 1.00793 1.59917 1.07796 1.12427 1.50045 1.21483 0.97378 0.91063 0.93723 0.91956 1.21776 0.95398 1.03564 0.94521 1.21163 0.96929 0.99104 0.94488 1.21816 0.96056 1.02158 1.00347 1.21945 1.00004 0.99067 0.99966 1.20302 0.78721 0.81830 0.90661 1.90580 1.47438 1.54857 1.45775 1.42590 1.71456 1.06707 1.06720 1.17290 1.22704 0.92193 0.83914 1.24114 1.07909 1.00203 0.88800 1.78242 1.25468 0.85570 1.19873 1.44528 1.38953 1.05420 1.02342 1.19843 1.52742 0.84339 0.88702 0.86729 1.25631 0.95565 0.98356 0.97557 1.70227 1.35009 1.22126 1.12378 0.85839 0.79034 0.80210 0.79111 1.19632 1.20122 1.18863 1.21247 1.19858 0.95891 0.86704 0.91310 0.96159 0.91390 0.83550 0.90017 0.90492 0.91240 0.92471 0.92714 0.92387 0.92678 0.92674 0.92244 0.77469 0.80765 0.91532 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.54 60.06 0.63 0.96 16 2 N -0.67 -8.37 6.30 -115.25 -0.73 -9.10 16 3 C 0.08 0.97 2.30 -68.87 -0.16 0.82 16 4 H 0.06 0.68 5.90 -51.92 -0.31 0.37 16 5 C -0.11 -1.22 4.24 -26.73 -0.11 -1.33 16 6 C -0.10 -0.77 2.83 -90.62 -0.26 -1.03 16 7 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 8 C -0.15 -1.09 8.95 37.16 0.33 -0.76 16 9 C 0.50 9.08 6.90 -10.98 -0.08 9.00 16 10 O -0.51 -11.65 13.79 5.53 0.08 -11.58 16 11 N -0.63 -11.53 5.47 -10.00 -0.05 -11.59 16 12 C -0.06 -1.31 6.90 -83.84 -0.58 -1.89 16 13 C -0.03 -0.95 10.85 -17.04 -0.18 -1.13 16 14 N -0.26 -7.77 10.40 30.80 0.32 -7.45 16 15 N -0.14 -4.05 3.74 -11.41 -0.04 -4.10 16 16 C -0.32 -8.74 10.25 -14.82 -0.15 -8.89 16 17 H 0.12 2.76 7.83 -52.48 -0.41 2.35 16 18 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 19 N -0.77 -21.96 11.81 55.49 0.66 -21.31 16 20 Si 0.93 19.23 29.55 -169.99 -5.02 14.20 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.09 -2.08 11.49 -16.39 -0.19 -2.27 16 25 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.02 0.19 7.93 -51.93 -0.41 -0.22 16 27 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 28 H 0.34 3.43 6.49 -39.29 -0.26 3.18 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.51 6.30 -51.93 -0.33 0.19 16 32 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.40 6.46 -51.93 -0.34 0.07 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.39 5.57 8.83 -40.82 -0.36 5.21 16 39 H 0.18 4.78 5.92 -52.48 -0.31 4.46 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.14 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -34.37 337.62 -6.28 -40.65 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.08 Total: 11.31 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.50 Total: -6.14 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.15 Total: -53.54 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.37 -6.28 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578754023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.407 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds