Wall clock time and date at job start Tue Mar 31 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30279 * 126.27840 * 2 1 4 4 N 1.28672 * 109.37536 * 179.73288 * 3 2 1 5 5 C 1.30273 * 109.37905 * 0.44208 * 4 3 2 6 6 C 1.50703 * 126.27927 * 179.82518 * 5 4 3 7 7 C 1.53003 * 109.47173 * 89.69400 * 6 5 4 8 8 N 1.46901 * 109.47191 * 179.97438 * 7 6 5 9 9 C 1.46953 * 110.99779 * 293.79869 * 8 7 6 10 10 C 1.53058 * 109.36326 * 176.81297 * 9 8 7 11 11 N 1.46962 * 109.36144 * 58.39836 * 10 9 8 12 12 C 1.46901 * 110.99634 * 176.81322 * 11 10 9 13 13 C 1.50699 * 109.47398 * 58.99060 * 12 11 10 14 14 H 1.08007 * 119.99826 * 4.99346 * 13 12 11 15 15 C 1.37873 * 120.00280 * 184.98744 * 13 12 11 16 16 N 1.31514 * 119.99946 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00021 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47217 * 90.00155 * 17 15 13 19 19 H 1.48504 * 109.47336 * 209.99844 * 17 15 13 20 20 H 1.48503 * 109.47070 * 329.99918 * 17 15 13 21 21 C 1.46955 * 110.88130 * 300.68025 * 11 10 9 22 22 C 1.46957 * 110.99855 * 170.00015 * 8 7 6 23 23 O 1.34356 * 107.44062 * 359.56790 * 5 4 3 24 24 H 1.08998 * 109.46915 * 270.00372 * 1 2 3 25 25 H 1.09001 * 109.47277 * 29.99650 * 1 2 3 26 26 H 1.08993 * 109.47363 * 149.99827 * 1 2 3 27 27 H 1.08997 * 109.47402 * 209.69030 * 6 5 4 28 28 H 1.09001 * 109.47673 * 329.69120 * 6 5 4 29 29 H 1.08997 * 109.46654 * 300.00088 * 7 6 5 30 30 H 1.09001 * 109.47050 * 59.99338 * 7 6 5 31 31 H 1.09003 * 109.48976 * 296.77713 * 9 8 7 32 32 H 1.09001 * 109.49274 * 56.84663 * 9 8 7 33 33 H 1.09004 * 109.48689 * 298.43404 * 10 9 8 34 34 H 1.08999 * 109.49018 * 178.36818 * 10 9 8 35 35 H 1.08998 * 109.47311 * 178.99374 * 12 11 10 36 36 H 1.09003 * 109.47147 * 298.99180 * 12 11 10 37 37 H 0.97007 * 120.00177 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.49033 * 299.35627 * 21 11 10 39 39 H 1.09001 * 109.48917 * 179.28861 * 21 11 10 40 40 H 1.09001 * 109.48708 * 303.14962 * 22 8 7 41 41 H 1.08994 * 109.49403 * 63.21856 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5653 -0.6254 0.0000 6 6 4.8176 -1.4638 -0.0001 7 6 5.2415 -1.7476 1.4424 8 7 6.4618 -2.5653 1.4423 9 6 6.2004 -3.9013 0.8889 10 6 7.5095 -4.6924 0.8326 11 7 8.0798 -4.7874 2.1838 12 6 9.3001 -5.6052 2.1837 13 6 10.3142 -4.9943 1.2512 14 1 10.1080 -4.0472 0.7747 15 6 11.5052 -5.6442 1.0065 16 7 12.3904 -5.1108 0.1931 17 14 11.8617 -7.2824 1.8302 18 1 11.3685 -8.3872 0.9692 19 1 13.3260 -7.4273 2.0310 20 1 11.1741 -7.3351 3.1455 21 6 8.3411 -3.4514 2.7372 22 6 7.0320 -2.6605 2.7934 23 8 2.3022 -1.0831 -0.0001 24 1 -0.3633 0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 4.6245 -2.4054 -0.5139 28 1 5.6147 -0.9264 -0.5139 29 1 5.4346 -0.8059 1.9562 30 1 4.4444 -2.2849 1.9563 31 1 5.4862 -4.4249 1.5244 32 1 5.7905 -3.8047 -0.1165 33 1 8.2143 -4.1828 0.1755 34 1 7.3132 -5.6937 0.4494 35 1 9.7113 -5.6444 3.1924 36 1 9.0610 -6.6147 1.8494 37 1 13.2286 -5.5679 0.0212 38 1 9.0553 -2.9278 2.1017 39 1 8.7510 -3.5480 3.7426 40 1 7.2285 -1.6591 3.1766 41 1 6.3273 -3.1699 3.4506 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648069821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:23 Heat of formation + Delta-G solvation = 51.030131 kcal Electronic energy + Delta-G solvation = -21686.109757 eV Core-core repulsion = 18410.259609 eV Total energy + Delta-G solvation = -3275.850147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.44388 -38.96476 -36.37823 -35.95307 -33.81575 -32.44470 -31.42561 -30.40673 -28.68579 -27.33847 -25.29636 -23.38918 -23.15690 -22.81156 -21.75078 -21.08760 -19.13207 -17.69566 -17.30101 -16.83070 -16.11443 -15.42517 -15.07132 -14.69006 -14.42907 -14.30339 -14.15328 -13.94448 -13.69445 -13.26676 -13.12645 -12.74017 -12.59088 -12.30726 -12.26860 -12.06293 -11.99500 -11.49954 -11.21722 -11.10408 -10.92819 -10.71252 -10.53389 -10.26600 -10.13446 -9.94907 -9.65585 -9.48810 -8.60205 -8.22528 -7.23368 -6.10831 -4.10872 0.89892 1.99527 2.15397 3.26384 3.34513 3.37993 3.49252 3.98778 4.24376 4.38670 4.50687 4.74130 4.82384 4.86078 4.93004 5.00449 5.14542 5.18507 5.22145 5.28280 5.41378 5.47402 5.53894 5.60263 5.72456 5.78139 5.85589 5.89251 6.04851 6.22208 6.50160 6.74033 6.81621 6.89356 7.03812 7.15554 7.23282 7.54372 8.02092 8.05942 8.08677 8.44028 8.92870 9.51782 11.01982 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044693 B = 0.002906 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.351469 B = 9633.048828 C = 9713.778848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.153 3.847 3 N -0.290 5.290 4 N -0.285 5.285 5 C 0.175 3.825 6 C -0.024 4.024 7 C 0.062 3.938 8 N -0.533 5.533 9 C 0.054 3.946 10 C 0.062 3.938 11 N -0.538 5.538 12 C 0.155 3.845 13 C -0.551 4.551 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.061 3.939 22 C 0.062 3.938 23 O -0.226 6.226 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.228 6.246 1.075 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 N -0.137 5.137 4 N -0.131 5.131 5 C -0.036 4.036 6 C -0.063 4.063 7 C -0.068 4.068 8 N -0.258 5.258 9 C -0.074 4.074 10 C -0.067 4.067 11 N -0.262 5.262 12 C 0.028 3.972 13 C -0.590 4.590 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.067 4.067 22 C -0.066 4.066 23 O -0.106 6.106 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.142 0.858 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -21.672 7.445 1.012 22.937 hybrid contribution 0.024 -2.064 0.278 2.082 sum -21.648 5.382 1.290 22.344 Atomic orbital electron populations 1.20336 0.80277 1.05651 1.05207 1.28014 0.97871 0.79766 1.00103 1.74403 0.96196 1.25693 1.17434 1.74438 1.12003 1.09261 1.17404 1.28080 0.85109 0.91658 0.98738 1.20302 0.87294 0.98522 1.00194 1.21985 0.91986 0.98916 0.93879 1.62068 1.25937 1.14370 1.23458 1.22343 0.98199 0.88003 0.98871 1.21959 0.93963 0.98847 0.91895 1.62628 1.29936 1.12915 1.20718 1.20147 0.86857 0.93192 0.96993 1.21700 1.01259 1.08544 1.27456 0.90444 1.24975 0.96000 0.97585 0.94521 1.69932 1.08510 1.39208 1.35958 0.86804 0.77465 0.84460 0.80683 1.20241 1.21335 1.18948 1.21968 0.94643 0.90002 1.00131 1.22213 0.96799 0.99726 0.87840 1.84793 1.17740 1.38349 1.69679 0.88364 0.87586 0.88917 0.88216 0.85845 0.89947 0.94611 0.94631 0.90968 0.92364 0.91292 0.95507 0.95705 0.92691 0.92646 0.91238 0.90889 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.15 1.55 8.48 -12.94 -0.11 1.44 16 3 N -0.29 -3.83 12.22 32.55 0.40 -3.43 16 4 N -0.28 -4.03 12.22 32.55 0.40 -3.63 16 5 C 0.18 2.11 7.73 -12.94 -0.10 2.01 16 6 C -0.02 -0.26 5.78 -27.88 -0.16 -0.42 16 7 C 0.06 0.72 4.94 -3.82 -0.02 0.70 16 8 N -0.53 -7.66 4.71 -234.47 -1.10 -8.76 16 9 C 0.05 0.78 5.41 -3.77 -0.02 0.76 16 10 C 0.06 1.16 5.24 -3.76 -0.02 1.14 16 11 N -0.54 -10.92 4.92 -235.90 -1.16 -12.08 16 12 C 0.15 3.65 4.21 -4.98 -0.02 3.63 16 13 C -0.55 -15.07 8.21 -34.44 -0.28 -15.35 16 14 H 0.08 2.32 6.07 -52.48 -0.32 2.00 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 17 Si 0.88 21.19 27.37 -169.99 -4.65 16.54 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.26 -6.15 6.69 56.52 0.38 -5.78 16 21 C 0.06 1.15 5.32 -3.77 -0.02 1.13 16 22 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 23 O -0.23 -2.54 10.87 5.41 0.06 -2.48 16 24 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.10 0.93 6.49 -51.93 -0.34 0.59 16 28 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 30 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.89 6.34 -51.93 -0.33 0.57 16 33 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.64 7.52 -51.93 -0.39 0.25 16 36 H 0.02 0.59 7.29 -51.93 -0.38 0.21 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.06 1.19 6.78 -51.93 -0.35 0.84 16 39 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 40 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -32.66 328.83 -7.07 -39.73 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.25 Total: -2.47 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.49 Total: -1.99 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.69 Total: -54.28 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.06 Total: -2.48 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.65 Total: 16.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.66 -7.07 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648069821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.762 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds