Wall clock time and date at job start Tue Mar 31 2020 01:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47084 * 2 1 4 4 C 1.38045 * 126.28976 * 269.99904 * 3 2 1 5 5 C 1.47428 * 126.41413 * 359.71186 * 4 3 2 6 6 O 1.21603 * 120.00270 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99919 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46972 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.47071 * 294.99557 * 9 8 7 11 11 C 1.53000 * 109.47000 * 174.99895 * 9 8 7 12 12 N 1.46498 * 109.47444 * 55.00094 * 9 8 7 13 13 C 1.36940 * 120.00280 * 205.00165 * 12 9 8 14 14 H 1.07997 * 119.99663 * 0.02562 * 13 12 9 15 15 C 1.38802 * 119.99992 * 179.97438 * 13 12 9 16 16 N 1.31622 * 120.00471 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46784 * 60.00366 * 17 15 13 19 19 H 1.48497 * 109.47275 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47502 * 300.00144 * 17 15 13 21 21 C 1.41290 * 107.17003 * 179.73433 * 4 3 2 22 22 N 1.30448 * 108.01917 * 0.02562 * 21 4 3 23 23 N 1.34259 * 126.29027 * 89.68653 * 3 2 1 24 24 C 1.46494 * 125.75336 * 0.23997 * 23 3 2 25 25 H 1.09000 * 109.47094 * 299.99889 * 1 2 3 26 26 H 1.09001 * 109.46977 * 60.00252 * 1 2 3 27 27 H 1.08995 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47094 * 240.00111 * 2 1 3 29 29 H 1.09001 * 109.46977 * 119.99748 * 2 1 3 30 30 H 0.97000 * 120.00146 * 0.02562 * 7 5 4 31 31 H 1.09000 * 109.47456 * 299.99853 * 8 7 5 32 32 H 1.08993 * 109.47342 * 60.00310 * 8 7 5 33 33 H 1.09000 * 109.47435 * 60.00061 * 11 9 8 34 34 H 1.09003 * 109.47367 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.46932 * 299.99747 * 11 9 8 36 36 H 0.97001 * 119.99663 * 24.99384 * 12 9 8 37 37 H 0.97004 * 120.00372 * 179.97438 * 16 15 13 38 38 H 1.07998 * 125.98994 * 179.97438 * 21 4 3 39 39 H 1.09001 * 109.47218 * 90.00210 * 24 23 3 40 40 H 1.09003 * 109.46965 * 209.99756 * 24 23 3 41 41 H 1.09000 * 109.47680 * 330.00516 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3047 2.1912 -1.1127 5 6 2.1642 1.7760 -2.5203 6 8 1.7737 0.6558 -2.7878 7 7 2.4677 2.6382 -3.5107 8 6 2.3276 2.2257 -4.9094 9 6 2.7342 3.3820 -5.8252 10 1 2.0363 4.2095 -5.6973 11 6 2.7077 2.9130 -7.2813 12 7 4.0869 3.8262 -5.4799 13 6 4.4799 5.1072 -5.7623 14 1 3.7926 5.7902 -6.2392 15 6 5.7614 5.5281 -5.4346 16 7 6.5989 4.6959 -4.8529 17 14 6.2978 7.2754 -5.8205 18 1 5.4129 8.2331 -5.1098 19 1 7.7005 7.4724 -5.3747 20 1 6.2066 7.5095 -7.2840 21 6 2.7438 3.4519 -0.6499 22 7 2.7326 3.4292 0.6543 23 7 2.2916 2.1721 1.0822 24 6 2.1386 1.7471 2.4757 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.7789 3.5318 -3.2974 31 1 2.9712 1.3672 -5.1014 32 1 1.2907 1.9536 -5.1059 33 1 1.7013 2.5825 -7.5384 34 1 2.9969 3.7368 -7.9338 35 1 3.4056 2.0855 -7.4092 36 1 4.7040 3.2129 -5.0511 37 1 7.4946 4.9900 -4.6242 38 1 3.0379 4.2875 -1.2677 39 1 3.0707 1.3025 2.8245 40 1 1.8944 2.6109 3.0942 41 1 1.3370 1.0119 2.5456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662268606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:01 Heat of formation + Delta-G solvation = 37.792649 kcal Electronic energy + Delta-G solvation = -22044.940784 eV Core-core repulsion = 18768.516616 eV Total energy + Delta-G solvation = -3276.424168 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40764 -38.77645 -36.20057 -34.46432 -33.31220 -32.98243 -31.74793 -29.35562 -28.66461 -27.37248 -25.50884 -23.89133 -23.52426 -22.09609 -20.31734 -20.06132 -19.23205 -17.51585 -17.09411 -15.85319 -15.73088 -15.37919 -15.03524 -14.49323 -14.36359 -14.29905 -13.72107 -13.58474 -13.35591 -12.97507 -12.81921 -12.76956 -12.32838 -12.15201 -12.05712 -11.86322 -11.72157 -11.32256 -11.26958 -10.83753 -10.72257 -10.64478 -10.33188 -9.98935 -9.68279 -9.44538 -9.37166 -8.95016 -8.68072 -8.31662 -7.00884 -5.78189 -3.08494 1.60433 2.33838 2.35708 3.42928 3.48138 3.48971 3.76586 3.84522 4.40770 4.46016 4.57534 4.82420 4.90425 5.05383 5.17006 5.17997 5.33240 5.36542 5.50021 5.54084 5.59250 5.63551 5.68083 5.84898 6.01034 6.10069 6.12983 6.17594 6.23724 6.40292 6.53859 6.61266 6.80377 6.84890 6.94814 7.12280 7.61795 7.68353 8.12819 8.39210 8.75747 9.51047 10.06557 10.42292 11.43518 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.004522 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.284460 B = 6191.003065 C = 7403.274878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C 0.153 3.847 4 C -0.288 4.288 5 C 0.592 3.408 6 O -0.563 6.563 7 N -0.709 5.709 8 C 0.118 3.882 9 C 0.159 3.841 10 H 0.053 0.947 11 C -0.162 4.162 12 N -0.723 5.723 13 C -0.243 4.243 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.930 5.930 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.287 1.287 21 C 0.090 3.910 22 N -0.302 5.302 23 N -0.367 5.367 24 C 0.098 3.902 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.408 0.592 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.194 0.806 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 -8.062 11.850 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 C 0.021 3.979 4 C -0.303 4.303 5 C 0.379 3.621 6 O -0.444 6.444 7 N -0.359 5.359 8 C -0.006 4.006 9 C 0.049 3.951 10 H 0.071 0.929 11 C -0.223 4.223 12 N -0.366 5.366 13 C -0.374 4.374 14 H 0.088 0.912 15 C -0.206 4.206 16 N -0.577 5.577 17 Si 0.736 3.264 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.097 4.097 22 N -0.121 5.121 23 N -0.147 5.147 24 C -0.044 4.044 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.089 0.911 30 H 0.245 0.755 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.210 0.790 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.861 -8.009 12.837 19.225 hybrid contribution 0.804 0.914 -0.715 1.412 sum -11.056 -7.095 12.121 17.875 Atomic orbital electron populations 1.21633 0.93654 1.02257 1.02149 1.20421 0.96870 0.88598 1.04730 1.21478 0.95430 0.94678 0.86337 1.20072 1.20236 0.96176 0.93793 1.17161 0.76833 0.84393 0.83681 1.90672 1.48867 1.20396 1.84456 1.45734 1.67006 1.17368 1.05798 1.21648 1.00483 0.98304 0.80175 1.20516 0.89218 0.93648 0.91764 0.92906 1.22360 0.99392 1.01432 0.99089 1.42468 1.09431 1.12373 1.72326 1.19174 0.96565 0.88534 1.33169 0.91190 1.24727 0.96590 0.97880 1.01374 1.69657 1.06744 1.34566 1.46759 0.86310 0.77541 0.84622 0.77919 1.21244 1.21782 1.21351 1.24181 0.96132 0.97572 0.91831 1.77198 1.22382 0.98992 1.13480 1.48319 1.50370 1.09873 1.06121 1.21902 1.03033 1.01689 0.77741 0.93426 0.91553 0.91648 0.86922 0.91066 0.75517 0.91897 0.91909 0.94231 0.92400 0.93226 0.78039 0.93431 0.78954 0.90475 0.88986 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.07 -0.74 5.39 -27.88 -0.15 -0.89 16 3 C 0.15 2.10 6.26 -81.60 -0.51 1.59 16 4 C -0.29 -4.61 6.13 -105.07 -0.64 -5.26 16 5 C 0.59 10.42 7.81 -12.52 -0.10 10.32 16 6 O -0.56 -10.75 14.83 5.28 0.08 -10.67 16 7 N -0.71 -12.32 5.38 -61.38 -0.33 -12.65 16 8 C 0.12 2.05 5.23 -4.04 -0.02 2.03 16 9 C 0.16 2.99 3.05 -67.93 -0.21 2.79 16 10 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 11 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 12 N -0.72 -17.02 4.56 -53.43 -0.24 -17.27 16 13 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 14 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 16 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 17 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.09 1.41 11.50 -16.98 -0.20 1.21 16 22 N -0.30 -4.65 12.50 30.86 0.39 -4.27 16 23 N -0.37 -4.72 3.98 -63.34 -0.25 -4.97 16 24 C 0.10 0.75 11.06 59.84 0.66 1.41 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.11 1.49 6.49 -51.93 -0.34 1.15 16 29 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 30 H 0.41 7.19 7.09 -40.82 -0.29 6.90 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.39 9.89 7.80 -40.82 -0.32 9.57 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.19 2.75 7.50 -52.49 -0.39 2.36 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.46 7.62 -51.93 -0.40 0.07 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -32.10 346.28 -6.46 -38.56 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.33 Total: 12.92 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.69 Total: 2.86 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: 0.28 Total: -65.67 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.10 -6.46 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662268606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.348 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds