Wall clock time and date at job start Tue Mar 31 2020 02:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 N 1.46494 * 109.47034 * 184.99717 * 3 2 1 5 5 N 1.28446 * 125.19140 * 265.46852 * 4 3 2 6 6 C 1.30864 * 110.92810 * 180.15895 * 5 4 3 7 7 C 1.39672 * 107.86227 * 359.62032 * 6 5 4 8 8 C 1.36603 * 125.19158 * 85.20300 * 4 3 2 9 9 C 1.47157 * 126.88528 * 359.97438 * 8 4 3 10 10 O 1.21632 * 119.99814 * 349.35507 * 9 8 4 11 11 N 1.34775 * 120.00374 * 169.35822 * 9 8 4 12 12 C 1.46507 * 119.99770 * 0.20245 * 11 9 8 13 13 C 1.46500 * 120.00320 * 180.20177 * 11 9 8 14 14 C 1.52999 * 109.47162 * 89.99902 * 13 11 9 15 15 N 1.46500 * 109.47162 * 179.97438 * 14 13 11 16 16 C 1.36940 * 119.99914 * 179.97438 * 15 14 13 17 17 H 1.07990 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99469 * 180.02562 * 16 15 14 19 19 N 1.31609 * 120.00526 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99319 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47495 * 60.00087 * 20 18 16 22 22 H 1.48507 * 109.46797 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47172 * 299.99709 * 20 18 16 24 24 H 1.09004 * 109.47237 * 64.99541 * 1 2 3 25 25 H 1.09008 * 109.46924 * 184.98612 * 1 2 3 26 26 H 1.08998 * 109.47347 * 304.98995 * 1 2 3 27 27 H 1.09003 * 109.47059 * 239.99938 * 2 1 3 28 28 H 1.08996 * 109.47029 * 120.00147 * 2 1 3 29 29 H 1.08994 * 109.46989 * 64.99716 * 3 2 1 30 30 H 1.08999 * 109.46520 * 304.99701 * 3 2 1 31 31 H 1.08004 * 126.06776 * 179.87273 * 6 5 4 32 32 H 1.08003 * 127.31993 * 180.24406 * 7 6 5 33 33 H 1.08992 * 109.46980 * 83.22875 * 12 11 9 34 34 H 1.08998 * 109.46700 * 203.23218 * 12 11 9 35 35 H 1.08999 * 109.46596 * 323.23029 * 12 11 9 36 36 H 1.09002 * 109.46964 * 210.00071 * 13 11 9 37 37 H 1.08997 * 109.46944 * 329.99830 * 13 11 9 38 38 H 1.09002 * 109.47318 * 299.99951 * 14 13 11 39 39 H 1.08997 * 109.47250 * 60.00115 * 14 13 11 40 40 H 0.97002 * 119.99878 * 0.02562 * 15 14 13 41 41 H 0.97000 * 120.00372 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4442 -0.1203 5 7 4.3238 1.4976 0.8638 6 6 5.5613 1.4864 0.4385 7 6 5.5345 1.4104 -0.9559 8 6 4.1931 1.3842 -1.2959 9 6 3.6270 1.3066 -2.6520 10 8 2.4387 1.0962 -2.8039 11 7 4.4253 1.4685 -3.7258 12 6 5.8574 1.7175 -3.5430 13 6 3.8610 1.3957 -5.0758 14 6 3.4140 2.7906 -5.5177 15 7 2.8503 2.7179 -6.8679 16 6 2.3802 3.8515 -7.4756 17 1 2.4255 4.7991 -6.9597 18 6 1.8455 3.7824 -8.7548 19 7 1.7899 2.6274 -9.3834 20 14 1.2050 5.3288 -9.5840 21 1 2.3069 6.3165 -9.7086 22 1 0.6903 4.9891 -10.9350 23 1 0.1090 5.9104 -8.7680 24 1 -0.3634 0.4344 -0.9314 25 1 -0.3633 -1.0239 0.0893 26 1 -0.3634 0.5893 0.8419 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7516 1.9298 0.9313 30 1 1.6053 1.9814 -0.8419 31 1 6.4464 1.5246 1.0563 32 1 6.3807 1.3784 -1.6263 33 1 6.3752 0.7695 -3.3973 34 1 6.2550 2.2167 -4.4265 35 1 6.0073 2.3514 -2.6690 36 1 4.6169 1.0208 -5.7658 37 1 3.0036 0.7226 -5.0753 38 1 2.6581 3.1656 -4.8277 39 1 4.2714 3.4637 -5.5181 40 1 2.8093 1.8666 -7.3311 41 1 1.4160 2.5791 -10.2771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663956777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:18 Heat of formation + Delta-G solvation = 47.973283 kcal Electronic energy + Delta-G solvation = -22006.860953 eV Core-core repulsion = 18730.878250 eV Total energy + Delta-G solvation = -3275.982702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 5.56 seconds Orbital eigenvalues (eV) -43.59677 -40.69577 -37.56641 -36.58168 -35.96551 -33.66325 -32.52795 -32.04492 -29.61414 -28.14303 -27.28965 -25.96434 -23.98659 -23.13032 -22.99462 -22.08989 -20.45029 -19.25554 -18.40175 -17.63177 -17.22742 -16.91514 -16.49875 -16.17556 -16.06844 -15.52283 -15.18576 -15.13402 -15.07021 -14.69881 -14.20909 -14.08416 -13.97347 -13.28071 -13.09201 -13.03832 -12.88919 -12.81634 -12.60746 -12.38870 -12.35228 -12.17724 -11.88978 -11.82549 -11.55562 -11.16141 -10.98147 -10.27747 -9.98795 -9.75160 -9.07916 -7.98627 -5.29527 0.21727 1.28902 1.46142 1.49699 1.55966 1.67308 1.98185 2.12426 2.55121 3.31428 3.35073 3.52782 3.78928 4.00111 4.02791 4.07829 4.13635 4.18815 4.22254 4.32227 4.40165 4.48202 4.54021 4.60608 4.70107 4.71299 4.82083 4.93606 4.98298 4.98963 5.06403 5.10204 5.25563 5.38434 5.46955 5.57023 5.74940 6.22099 6.23046 6.92557 7.10669 7.29211 8.00309 8.26047 9.24418 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.003730 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.253721 B = 7505.630849 C = 8271.664325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.119 3.881 4 N -0.268 5.268 5 N -0.299 5.299 6 C -0.005 4.005 7 C -0.190 4.190 8 C -0.057 4.057 9 C 0.575 3.425 10 O -0.572 6.572 11 N -0.591 5.591 12 C 0.048 3.952 13 C 0.125 3.875 14 C 0.149 3.851 15 N -0.742 5.742 16 C -0.254 4.254 17 H 0.072 0.928 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.976 3.024 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.211 0.789 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.064 0.936 38 H -0.002 1.002 39 H 0.031 0.969 40 H 0.377 0.623 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.836 -4.651 21.419 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.001 4.001 4 N -0.056 5.056 5 N -0.132 5.132 6 C -0.180 4.180 7 C -0.218 4.218 8 C -0.185 4.185 9 C 0.363 3.637 10 O -0.452 6.452 11 N -0.322 5.322 12 C -0.093 4.093 13 C 0.002 3.998 14 C 0.021 3.979 15 N -0.386 5.386 16 C -0.385 4.385 17 H 0.090 0.910 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.804 3.196 21 H -0.199 1.199 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.239 0.761 32 H 0.227 0.773 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.016 0.984 39 H 0.049 0.951 40 H 0.209 0.791 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.391 -4.531 22.295 24.249 hybrid contribution -0.264 0.381 -1.678 1.741 sum 8.127 -4.150 20.617 22.546 Atomic orbital electron populations 1.21637 0.92849 1.03162 1.02410 1.21708 0.98092 0.94345 1.01985 1.22232 0.72536 1.00205 1.05134 1.45951 1.07962 1.49817 1.01877 1.73180 1.02439 1.20408 1.17134 1.24321 0.94762 1.04396 0.94541 1.23488 0.94933 1.06186 0.97202 1.21407 0.93730 1.15250 0.88103 1.17373 0.85444 0.77022 0.83849 1.90808 1.16606 1.51036 1.86793 1.47478 1.10500 1.69712 1.04540 1.22908 0.77669 1.03447 1.05272 1.21431 0.99744 0.96662 0.81942 1.20946 0.95245 0.96051 0.85639 1.42362 1.73911 1.08103 1.14183 1.19541 1.32471 0.88890 0.97646 0.91004 1.25593 1.02511 1.00104 0.98022 1.69798 1.52385 1.25329 1.14137 0.85182 0.78325 0.78849 0.77207 1.19930 1.21697 1.20699 0.93393 0.91088 0.90592 0.93367 0.90810 0.86570 0.89276 0.76071 0.77279 0.89022 0.89434 0.87878 0.87798 0.91731 0.98384 0.95072 0.79132 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.91 71.98 0.71 -1.99 16 2 C -0.12 -2.75 6.13 30.59 0.19 -2.56 16 3 C 0.12 2.82 5.59 86.38 0.48 3.31 16 4 N -0.27 -6.92 3.35 -334.70 -1.12 -8.05 16 5 N -0.30 -7.03 11.90 -57.14 -0.68 -7.71 16 6 C 0.00 -0.08 12.03 85.18 1.02 0.94 16 7 C -0.19 -3.37 8.85 22.66 0.20 -3.17 16 8 C -0.06 -1.48 6.78 40.78 0.28 -1.20 16 9 C 0.57 18.04 7.63 86.59 0.66 18.70 16 10 O -0.57 -22.23 13.85 -4.13 -0.06 -22.29 16 11 N -0.59 -16.21 2.87 -850.98 -2.45 -18.65 16 12 C 0.05 0.78 8.73 127.77 1.12 1.89 16 13 C 0.13 4.23 5.49 86.38 0.47 4.70 16 14 C 0.15 6.31 6.58 86.38 0.57 6.88 16 15 N -0.74 -39.14 5.60 -343.45 -1.92 -41.06 16 16 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 17 H 0.07 4.01 7.83 -2.92 -0.02 3.99 16 18 C -0.07 -4.06 5.50 84.87 0.47 -3.59 16 19 N -0.97 -59.61 13.06 21.65 0.28 -59.32 16 20 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.35 7.51 -2.39 -0.02 1.33 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.09 2.48 6.87 -2.39 -0.02 2.46 16 31 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.21 2.13 4.66 -2.91 -0.01 2.11 16 33 H 0.09 1.00 7.61 -2.39 -0.02 0.99 16 34 H 0.09 1.34 8.02 -2.39 -0.02 1.32 16 35 H 0.10 1.39 4.96 -2.39 -0.01 1.37 16 36 H 0.10 3.05 8.07 -2.39 -0.02 3.03 16 37 H 0.06 2.49 7.42 -2.39 -0.02 2.47 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.38 20.70 7.67 -92.71 -0.71 19.99 16 41 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.56 338.72 3.42 -72.14 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.32 Total: 26.24 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 7.01 Total: 10.10 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -5.89 Total: -134.79 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.56 3.42 -72.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663956777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.118 kcal (2) G-P(sol) polarization free energy of solvation -75.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.56 seconds