Wall clock time and date at job start Tue Mar 31 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46654 * 2 1 4 4 H 1.09003 * 109.47155 * 304.99799 * 3 2 1 5 5 C 1.53003 * 109.46793 * 185.00224 * 3 2 1 6 6 N 1.46505 * 109.47131 * 184.99935 * 5 3 2 7 7 C 1.34771 * 120.00040 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00014 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00064 * 179.97438 * 7 6 5 10 10 N 1.46495 * 109.47220 * 179.97438 * 9 7 6 11 11 C 1.34957 * 126.03329 * 125.02441 * 10 9 7 12 12 C 1.35317 * 107.74055 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.03591 * 180.02562 * 12 11 10 14 14 C 1.39868 * 107.92640 * 0.02562 * 12 11 10 15 15 N 1.30844 * 108.19764 * 359.97438 * 14 12 11 16 16 N 1.46494 * 109.47361 * 64.99917 * 3 2 1 17 17 C 1.36932 * 120.00190 * 274.99963 * 16 3 2 18 18 H 1.08002 * 120.00072 * 359.97438 * 17 16 3 19 19 C 1.38812 * 120.00112 * 179.97438 * 17 16 3 20 20 N 1.31616 * 120.00116 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00014 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47361 * 89.99670 * 21 19 17 23 23 H 1.48498 * 109.46952 * 209.99637 * 21 19 17 24 24 H 1.48496 * 109.46892 * 329.99750 * 21 19 17 25 25 H 1.08997 * 109.47507 * 299.99951 * 1 2 3 26 26 H 1.09002 * 109.47604 * 60.00140 * 1 2 3 27 27 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47507 * 240.00049 * 2 1 3 29 29 H 1.08994 * 109.47563 * 119.99204 * 2 1 3 30 30 H 1.09002 * 109.47187 * 64.99893 * 5 3 2 31 31 H 1.08995 * 109.47078 * 304.99879 * 5 3 2 32 32 H 0.96999 * 119.99582 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.47128 * 59.99864 * 9 7 6 34 34 H 1.09005 * 109.47372 * 300.00360 * 9 7 6 35 35 H 1.07995 * 126.12756 * 0.02562 * 11 10 9 36 36 H 1.09000 * 109.47551 * 269.97794 * 13 12 11 37 37 H 1.09002 * 109.46861 * 29.97707 * 13 12 11 38 38 H 1.09005 * 109.47196 * 149.97635 * 13 12 11 39 39 H 1.07995 * 125.89923 * 180.25722 * 14 12 11 40 40 H 0.97003 * 119.99746 * 94.99955 * 16 3 2 41 41 H 0.97000 * 120.00066 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5647 1.4445 -0.1258 6 7 4.0629 2.8170 -0.0060 7 6 5.3856 3.0632 -0.0859 8 8 6.1633 2.1485 -0.2574 9 6 5.8980 4.4751 0.0367 10 7 7.3581 4.4767 -0.0824 11 6 8.0822 5.2028 -0.9597 12 6 9.3889 4.9225 -0.7475 13 6 10.5551 5.5084 -1.5010 14 6 9.4660 3.9928 0.2947 15 7 8.2492 3.7251 0.6942 16 7 1.6523 2.0976 1.2517 17 6 0.4155 2.6735 1.3687 18 1 -0.2741 2.6452 0.5380 19 6 0.0480 3.2937 2.5550 20 7 -1.1406 3.8477 2.6673 21 14 1.2411 3.3432 3.9916 22 1 2.0760 4.5677 3.8996 23 1 0.4800 3.3576 5.2667 24 1 2.1154 2.1436 3.9504 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.8498 1.0378 -1.0961 31 1 3.9953 0.8313 0.6658 32 1 3.4408 3.5485 0.1308 33 1 5.6125 4.8823 1.0066 34 1 5.4677 5.0879 -0.7555 35 1 7.6893 5.8859 -1.6982 36 1 10.7825 4.8817 -2.3633 37 1 10.3014 6.5132 -1.8389 38 1 11.4250 5.5542 -0.8457 39 1 10.3734 3.5725 0.7025 40 1 2.2718 2.1233 1.9977 41 1 -1.3972 4.2814 3.4961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665760617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:58 Heat of formation + Delta-G solvation = 50.607138 kcal Electronic energy + Delta-G solvation = -21669.171820 eV Core-core repulsion = 18393.303331 eV Total energy + Delta-G solvation = -3275.868490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -41.29316 -39.43038 -36.94212 -33.90244 -33.73772 -32.40939 -31.66158 -30.34348 -29.23728 -27.68213 -25.64213 -23.58591 -22.53109 -21.38492 -20.53498 -20.32039 -19.82610 -17.86498 -17.09493 -16.95516 -15.76587 -15.50772 -15.25485 -14.61178 -14.30775 -14.14222 -13.68765 -13.47322 -13.27850 -13.22144 -13.00250 -12.89863 -12.75035 -12.57564 -12.16938 -11.99896 -11.59396 -11.21574 -11.03315 -10.80574 -10.53519 -10.44543 -10.34492 -10.09798 -9.98923 -9.55532 -9.34244 -9.04527 -8.87504 -8.38027 -7.41453 -5.87830 -3.24276 1.82558 2.32425 2.63780 2.78715 3.27407 3.31512 3.34426 3.39585 4.42005 4.48875 4.66470 4.76284 4.92770 4.98863 5.13361 5.16166 5.22738 5.34502 5.39616 5.56406 5.70566 5.72327 5.83288 5.85452 5.86312 5.99554 6.05059 6.22114 6.40284 6.46513 6.53463 6.60799 6.69201 6.88013 6.90275 7.24305 7.64395 7.69711 7.87652 8.29206 8.30828 9.08157 9.80586 9.99901 11.29700 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.003884 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.220958 B = 7207.481094 C = 8015.269345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.063 0.937 5 C 0.114 3.886 6 N -0.714 5.714 7 C 0.496 3.504 8 O -0.522 6.522 9 C 0.113 3.887 10 N -0.359 5.359 11 C 0.051 3.949 12 C -0.243 4.243 13 C -0.069 4.069 14 C 0.040 3.960 15 N -0.263 5.263 16 N -0.747 5.747 17 C -0.243 4.243 18 H 0.095 0.905 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.879 3.121 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.172 0.828 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.180 0.820 40 H 0.362 0.638 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.630 2.886 -8.783 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.081 0.919 5 C -0.010 4.010 6 N -0.368 5.368 7 C 0.279 3.721 8 O -0.397 6.397 9 C -0.012 4.012 10 N -0.141 5.141 11 C -0.094 4.094 12 C -0.255 4.255 13 C -0.128 4.128 14 C -0.147 4.147 15 N -0.083 5.083 16 N -0.391 5.391 17 C -0.373 4.373 18 H 0.113 0.887 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.709 3.291 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.203 1.203 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.189 0.811 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.197 0.803 40 H 0.195 0.805 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.046 1.645 -8.119 18.058 hybrid contribution 0.767 0.812 0.690 1.313 sum 16.813 2.457 -7.429 18.544 Atomic orbital electron populations 1.21778 0.95150 0.99766 1.03763 1.22042 0.97389 0.97830 1.00149 1.20545 0.89694 0.93039 0.90800 0.91879 1.21737 0.95566 0.82216 1.01518 1.45935 1.06618 1.11158 1.73080 1.20432 0.83011 0.90679 0.77962 1.90763 1.55702 1.45471 1.47764 1.21521 0.76332 0.97061 1.06301 1.47962 1.05229 1.33395 1.27501 1.22296 0.91837 0.98934 0.96375 1.20100 0.94381 1.06670 1.04348 1.20022 0.94561 0.99499 0.98672 1.23814 0.96007 0.97885 0.97040 1.77510 0.99036 1.14834 1.16902 1.42854 1.16968 1.67640 1.11612 1.19047 0.90872 1.27481 0.99886 0.88730 1.24657 0.96363 1.00323 0.97469 1.69686 1.19292 1.41955 1.26810 0.86650 0.80990 0.77764 0.83669 1.21167 1.21769 1.20350 0.89363 0.93859 0.94818 0.93551 0.92648 0.91417 0.91777 0.75312 0.86651 0.85668 0.81094 0.92270 0.92313 0.92008 0.80316 0.80500 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.18 37.16 0.34 -2.25 16 2 C -0.13 -2.18 5.61 -26.73 -0.15 -2.33 16 3 C 0.17 2.87 2.59 -67.93 -0.18 2.70 16 4 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 5 C 0.11 1.76 5.23 -4.04 -0.02 1.74 16 6 N -0.71 -10.36 5.39 -60.29 -0.32 -10.69 16 7 C 0.50 7.48 7.86 -10.99 -0.09 7.40 16 8 O -0.52 -10.02 15.71 5.56 0.09 -9.94 16 9 C 0.11 1.30 6.99 -5.20 -0.04 1.26 16 10 N -0.36 -4.84 3.40 -62.55 -0.21 -5.05 16 11 C 0.05 0.55 11.36 -17.22 -0.20 0.36 16 12 C -0.24 -2.69 6.10 -105.05 -0.64 -3.33 16 13 C -0.07 -0.53 10.37 36.01 0.37 -0.16 16 14 C 0.04 0.51 11.96 -17.36 -0.21 0.30 16 15 N -0.26 -4.19 11.64 30.62 0.36 -3.83 16 16 N -0.75 -15.52 4.31 -53.42 -0.23 -15.75 16 17 C -0.24 -6.08 8.23 -15.06 -0.12 -6.20 16 18 H 0.09 2.55 7.55 -52.49 -0.40 2.15 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -27.44 13.97 55.49 0.78 -26.67 16 21 Si 0.88 20.94 27.74 -169.99 -4.71 16.23 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 25 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.41 5.65 8.14 -40.82 -0.33 5.32 16 33 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.13 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.36 7.72 5.66 -40.82 -0.23 7.49 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -33.57 343.21 -6.46 -40.04 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.35 Total: 10.87 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.02 Total: -0.38 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.36 Total: -61.99 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.57 -6.46 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665760617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.644 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds