Wall clock time and date at job start Tue Mar 31 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46654 * 2 1 4 4 H 1.09003 * 109.47155 * 304.99799 * 3 2 1 5 5 C 1.53003 * 109.46793 * 185.00224 * 3 2 1 6 6 N 1.46505 * 109.47131 * 184.99935 * 5 3 2 7 7 C 1.34771 * 120.00040 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00014 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00064 * 179.97438 * 7 6 5 10 10 N 1.46495 * 109.47220 * 179.97438 * 9 7 6 11 11 C 1.34957 * 126.03329 * 125.02441 * 10 9 7 12 12 C 1.35317 * 107.74055 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.03591 * 180.02562 * 12 11 10 14 14 C 1.39868 * 107.92640 * 0.02562 * 12 11 10 15 15 N 1.30844 * 108.19764 * 359.97438 * 14 12 11 16 16 N 1.46494 * 109.47361 * 64.99917 * 3 2 1 17 17 C 1.36932 * 120.00190 * 274.99963 * 16 3 2 18 18 H 1.08002 * 120.00072 * 359.97438 * 17 16 3 19 19 C 1.38812 * 120.00112 * 179.97438 * 17 16 3 20 20 N 1.31616 * 120.00116 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00014 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47361 * 89.99670 * 21 19 17 23 23 H 1.48498 * 109.46952 * 209.99637 * 21 19 17 24 24 H 1.48496 * 109.46892 * 329.99750 * 21 19 17 25 25 H 1.08997 * 109.47507 * 299.99951 * 1 2 3 26 26 H 1.09002 * 109.47604 * 60.00140 * 1 2 3 27 27 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47507 * 240.00049 * 2 1 3 29 29 H 1.08994 * 109.47563 * 119.99204 * 2 1 3 30 30 H 1.09002 * 109.47187 * 64.99893 * 5 3 2 31 31 H 1.08995 * 109.47078 * 304.99879 * 5 3 2 32 32 H 0.96999 * 119.99582 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.47128 * 59.99864 * 9 7 6 34 34 H 1.09005 * 109.47372 * 300.00360 * 9 7 6 35 35 H 1.07995 * 126.12756 * 0.02562 * 11 10 9 36 36 H 1.09000 * 109.47551 * 269.97794 * 13 12 11 37 37 H 1.09002 * 109.46861 * 29.97707 * 13 12 11 38 38 H 1.09005 * 109.47196 * 149.97635 * 13 12 11 39 39 H 1.07995 * 125.89923 * 180.25722 * 14 12 11 40 40 H 0.97003 * 119.99746 * 94.99955 * 16 3 2 41 41 H 0.97000 * 120.00066 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5647 1.4445 -0.1258 6 7 4.0629 2.8170 -0.0060 7 6 5.3856 3.0632 -0.0859 8 8 6.1633 2.1485 -0.2574 9 6 5.8980 4.4751 0.0367 10 7 7.3581 4.4767 -0.0824 11 6 8.0822 5.2028 -0.9597 12 6 9.3889 4.9225 -0.7475 13 6 10.5551 5.5084 -1.5010 14 6 9.4660 3.9928 0.2947 15 7 8.2492 3.7251 0.6942 16 7 1.6523 2.0976 1.2517 17 6 0.4155 2.6735 1.3687 18 1 -0.2741 2.6452 0.5380 19 6 0.0480 3.2937 2.5550 20 7 -1.1406 3.8477 2.6673 21 14 1.2411 3.3432 3.9916 22 1 2.0760 4.5677 3.8996 23 1 0.4800 3.3576 5.2667 24 1 2.1154 2.1436 3.9504 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.8498 1.0378 -1.0961 31 1 3.9953 0.8313 0.6658 32 1 3.4408 3.5485 0.1308 33 1 5.6125 4.8823 1.0066 34 1 5.4677 5.0879 -0.7555 35 1 7.6893 5.8859 -1.6982 36 1 10.7825 4.8817 -2.3633 37 1 10.3014 6.5132 -1.8389 38 1 11.4250 5.5542 -0.8457 39 1 10.3734 3.5725 0.7025 40 1 2.2718 2.1233 1.9977 41 1 -1.3972 4.2814 3.4961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665760617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:46 Heat of formation + Delta-G solvation = 26.515943 kcal Electronic energy + Delta-G solvation = -21670.216493 eV Core-core repulsion = 18393.303331 eV Total energy + Delta-G solvation = -3276.913162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 12.47 seconds Orbital eigenvalues (eV) -42.18136 -40.62967 -38.43291 -35.32471 -34.65156 -34.15093 -32.48009 -32.09231 -30.40227 -28.81953 -26.51137 -25.22574 -24.00696 -22.41903 -21.79080 -21.36844 -20.97952 -19.63327 -18.20011 -18.01443 -17.14092 -16.71080 -16.47183 -16.04797 -15.56591 -15.35768 -14.86403 -14.71661 -14.55629 -14.41947 -14.34164 -14.05164 -13.87047 -13.54376 -13.13418 -13.08432 -12.87260 -12.82305 -12.66787 -12.40189 -12.11070 -11.90478 -11.64566 -11.45387 -11.42433 -11.17287 -10.93272 -10.33452 -10.11377 -9.30768 -9.21165 -7.95982 -5.28062 0.95449 1.38287 1.42301 1.46883 1.48559 1.51206 1.92831 2.22500 2.50893 3.35054 3.51938 3.64211 3.74367 3.87610 4.00488 4.13984 4.18890 4.29646 4.43090 4.51445 4.52691 4.62211 4.71032 4.79831 4.94506 5.03362 5.05479 5.09182 5.17886 5.27394 5.34523 5.40155 5.50662 5.70878 5.76574 5.87087 6.11482 6.26774 6.50378 6.79805 7.12252 7.15525 7.87131 8.05494 9.25038 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.003884 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.220958 B = 7207.481094 C = 8015.269345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.170 3.830 4 H 0.066 0.934 5 C 0.123 3.877 6 N -0.710 5.710 7 C 0.495 3.505 8 O -0.567 6.567 9 C 0.113 3.887 10 N -0.371 5.371 11 C 0.051 3.949 12 C -0.254 4.254 13 C -0.065 4.065 14 C 0.029 3.971 15 N -0.324 5.324 16 N -0.746 5.746 17 C -0.203 4.203 18 H 0.071 0.929 19 C -0.057 4.057 20 N -0.982 5.982 21 Si 0.938 3.062 22 H -0.275 1.275 23 H -0.307 1.307 24 H -0.266 1.266 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.416 0.584 33 H 0.126 0.874 34 H 0.170 0.830 35 H 0.211 0.789 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.196 0.804 40 H 0.362 0.638 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.465 3.352 -10.234 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.062 3.938 4 H 0.084 0.916 5 C -0.001 4.001 6 N -0.363 5.363 7 C 0.281 3.719 8 O -0.445 6.445 9 C -0.011 4.011 10 N -0.154 5.154 11 C -0.094 4.094 12 C -0.265 4.265 13 C -0.123 4.123 14 C -0.157 4.157 15 N -0.145 5.145 16 N -0.390 5.390 17 C -0.334 4.334 18 H 0.089 0.911 19 C -0.249 4.249 20 N -0.633 5.633 21 Si 0.768 3.232 22 H -0.202 1.202 23 H -0.235 1.235 24 H -0.191 1.191 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.253 0.747 33 H 0.143 0.857 34 H 0.188 0.812 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.213 0.787 40 H 0.195 0.805 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.924 2.096 -9.601 20.442 hybrid contribution 0.207 0.595 1.005 1.186 sum 18.131 2.691 -8.596 20.246 Atomic orbital electron populations 1.21689 0.96181 1.00453 1.01723 1.21983 0.96282 0.97254 1.01527 1.20682 0.90927 0.93226 0.88933 0.91617 1.21567 0.93850 0.82884 1.01831 1.45907 1.06835 1.10857 1.72745 1.21050 0.82461 0.91861 0.76547 1.90744 1.56667 1.47235 1.49857 1.21749 0.75820 0.94975 1.08601 1.48135 1.05665 1.33703 1.27906 1.23017 0.91787 0.98517 0.96033 1.20560 0.95706 1.06222 1.04038 1.20069 0.93585 1.00169 0.98517 1.24292 0.95934 0.98006 0.97468 1.77417 1.00525 1.17240 1.19272 1.42848 1.15433 1.67622 1.13083 1.18960 0.91399 1.24700 0.98368 0.91084 1.25252 0.97800 1.01656 1.00166 1.69840 1.21608 1.44639 1.27246 0.85679 0.79071 0.78432 0.80063 1.20150 1.23497 1.19103 0.93501 0.93627 0.92889 0.90355 0.93058 0.90048 0.92942 0.74727 0.85669 0.81221 0.77240 0.91888 0.90685 0.91246 0.78703 0.80510 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.18 71.98 0.66 -4.20 16 2 C -0.13 -3.96 5.61 30.60 0.17 -3.78 16 3 C 0.17 5.48 2.59 45.00 0.12 5.59 16 4 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 5 C 0.12 3.56 5.23 86.38 0.45 4.02 16 6 N -0.71 -19.16 5.39 -463.05 -2.49 -21.66 16 7 C 0.50 14.12 7.86 87.66 0.69 14.81 16 8 O -0.57 -21.36 15.71 -3.04 -0.05 -21.41 16 9 C 0.11 2.31 6.99 85.63 0.60 2.91 16 10 N -0.37 -9.36 3.40 -351.80 -1.20 -10.56 16 11 C 0.05 0.98 11.36 83.54 0.95 1.93 16 12 C -0.25 -5.10 6.10 -20.14 -0.12 -5.23 16 13 C -0.07 -0.83 10.37 71.24 0.74 -0.09 16 14 C 0.03 0.73 11.96 85.23 1.02 1.75 16 15 N -0.32 -10.19 11.64 -57.02 -0.66 -10.86 16 16 N -0.75 -30.06 4.31 -322.93 -1.39 -31.46 16 17 C -0.20 -10.14 8.23 84.03 0.69 -9.45 16 18 H 0.07 3.87 7.55 -2.91 -0.02 3.85 16 19 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 20 N -0.98 -59.38 13.97 21.65 0.30 -59.07 16 21 Si 0.94 43.42 27.74 68.60 1.90 45.32 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 24 H -0.27 -11.58 6.52 99.48 0.65 -10.94 16 25 H 0.05 1.98 5.99 -2.39 -0.01 1.96 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.42 10.48 8.14 -92.71 -0.75 9.72 16 33 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.17 1.83 8.07 -2.38 -0.02 1.81 16 35 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.20 3.74 8.06 -2.91 -0.02 3.71 16 40 H 0.36 14.81 5.66 -92.71 -0.52 14.29 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -74.85 343.21 2.54 -72.32 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.30 Total: 31.76 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 6.43 Total: 5.61 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -5.44 Total: -133.60 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.90 Total: 45.32 kcal Total: -74.85 2.54 -72.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665760617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.831 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.47 seconds