Wall clock time and date at job start Tue Mar 31 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 6 6 N 1.46495 * 109.47068 * 174.99916 * 5 3 2 7 7 C 1.34784 * 119.99706 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99905 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99939 * 180.02562 * 7 6 5 10 10 N 1.46503 * 109.47016 * 179.97438 * 9 7 6 11 11 C 1.34940 * 126.03634 * 124.99908 * 10 9 7 12 12 C 1.35322 * 107.74777 * 179.97438 * 11 10 9 13 13 C 1.50696 * 126.03977 * 179.97438 * 12 11 10 14 14 C 1.39874 * 107.91600 * 0.02562 * 12 11 10 15 15 N 1.30835 * 108.19953 * 359.73649 * 14 12 11 16 16 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 17 17 C 1.36944 * 120.00088 * 84.99964 * 16 3 2 18 18 H 1.08000 * 119.99709 * 359.97438 * 17 16 3 19 19 C 1.38811 * 119.99796 * 180.02562 * 17 16 3 20 20 N 1.31614 * 120.00060 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99659 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47382 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47038 * 119.99932 * 21 19 17 24 24 H 1.48497 * 109.46836 * 239.99606 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.08994 * 109.47064 * 295.00931 * 5 3 2 31 31 H 1.09009 * 109.46393 * 55.00173 * 5 3 2 32 32 H 0.96997 * 120.00558 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46759 * 299.99983 * 9 7 6 34 34 H 1.08998 * 109.47009 * 60.00109 * 9 7 6 35 35 H 1.07999 * 126.12706 * 0.02562 * 11 10 9 36 36 H 1.08999 * 109.47227 * 90.00620 * 13 12 11 37 37 H 1.09000 * 109.46997 * 209.99866 * 13 12 11 38 38 H 1.09000 * 109.47366 * 330.00491 * 13 12 11 39 39 H 1.08000 * 125.89801 * 180.02562 * 14 12 11 40 40 H 0.96998 * 120.00208 * 264.99507 * 16 3 2 41 41 H 0.97001 * 119.99935 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0630 0.0859 8 8 6.1636 2.1482 0.2565 9 6 5.8982 4.4749 -0.0368 10 7 7.3582 4.4766 0.0835 11 6 8.2277 4.9959 -0.8083 12 6 9.4777 4.7962 -0.3301 13 6 10.7608 5.2148 -1.0005 14 6 9.3684 4.1317 0.8958 15 7 8.0981 3.9443 1.1472 16 7 1.6524 2.0975 -1.2518 17 6 0.4155 2.6736 -1.3687 18 1 -0.2743 2.6446 -0.5382 19 6 0.0481 3.2937 -2.5550 20 7 0.8887 3.3285 -3.5672 21 14 -1.6393 4.0789 -2.7147 22 1 -2.3889 3.9039 -1.4449 23 1 -1.4859 5.5273 -3.0040 24 1 -2.3847 3.4291 -3.8226 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8499 1.0377 1.0960 31 1 3.9954 0.8311 -0.6660 32 1 3.4409 3.5484 -0.1308 33 1 5.6126 4.8820 -1.0068 34 1 5.4680 5.0876 0.7554 35 1 7.9717 5.4841 -1.7370 36 1 11.0289 6.2203 -0.6763 37 1 11.5562 4.5211 -0.7279 38 1 10.6255 5.2057 -2.0820 39 1 10.1903 3.8299 1.5280 40 1 2.2718 2.1232 -1.9978 41 1 0.6321 3.7622 -4.3960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665760618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:12 Heat of formation + Delta-G solvation = 46.010888 kcal Electronic energy + Delta-G solvation = -21585.951097 eV Core-core repulsion = 18309.883299 eV Total energy + Delta-G solvation = -3276.067798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 5.71 seconds Orbital eigenvalues (eV) -41.20346 -39.28357 -36.76164 -33.77332 -33.63692 -32.43232 -31.57629 -29.87874 -29.00896 -27.50449 -25.55162 -23.75238 -22.63844 -21.29012 -20.42814 -20.20690 -19.64004 -17.52649 -16.98442 -16.82159 -15.69207 -15.33576 -15.04139 -14.62881 -14.14922 -14.08131 -13.60351 -13.47223 -13.21820 -13.12185 -13.01193 -12.84047 -12.59269 -12.34463 -12.01504 -11.89429 -11.47659 -11.02892 -10.95421 -10.79260 -10.49694 -10.45274 -10.24109 -10.06137 -9.89287 -9.60374 -9.24720 -9.02592 -8.71610 -8.29357 -7.10839 -5.88936 -3.18194 1.91244 2.42540 2.78719 2.86123 3.33959 3.41125 3.42929 3.44620 4.47923 4.55558 4.78525 4.91612 5.01984 5.06588 5.25072 5.35319 5.37857 5.43010 5.50904 5.63188 5.81117 5.86304 5.91482 5.92203 5.94306 6.10637 6.13616 6.37720 6.48780 6.52732 6.56194 6.68973 6.81198 6.96508 6.99318 7.19581 7.60624 7.76965 7.80682 8.28462 8.44543 9.40709 9.95163 10.31275 11.32966 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.003640 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.983199 B = 7689.520870 C = 8700.003222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.117 3.883 6 N -0.710 5.710 7 C 0.497 3.503 8 O -0.525 6.525 9 C 0.114 3.886 10 N -0.357 5.357 11 C 0.053 3.947 12 C -0.245 4.245 13 C -0.069 4.069 14 C 0.039 3.961 15 N -0.265 5.265 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.074 0.926 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.903 3.097 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.172 0.828 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.179 0.821 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.272 3.637 6.239 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.007 4.007 6 N -0.363 5.363 7 C 0.280 3.720 8 O -0.401 6.401 9 C -0.011 4.011 10 N -0.139 5.139 11 C -0.092 4.092 12 C -0.257 4.257 13 C -0.127 4.127 14 C -0.148 4.148 15 N -0.085 5.085 16 N -0.364 5.364 17 C -0.368 4.368 18 H 0.092 0.908 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.734 3.266 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.247 0.753 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.190 0.810 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.196 0.804 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.621 2.570 7.192 13.906 hybrid contribution -0.639 1.023 -1.190 1.694 sum 10.982 3.592 6.002 13.020 Atomic orbital electron populations 1.21769 0.95677 0.99685 1.03238 1.22066 0.96998 0.98357 1.00071 1.20569 0.89823 0.92867 0.91427 0.92765 1.21673 0.95606 0.82267 1.01162 1.45881 1.06544 1.11111 1.72723 1.20396 0.83097 0.90555 0.77946 1.90755 1.55843 1.45503 1.48005 1.21521 0.76464 0.97092 1.06040 1.47959 1.05229 1.44764 1.15990 1.22328 0.89651 1.00761 0.96473 1.20092 0.94996 1.11592 0.99008 1.20014 0.92998 1.00492 0.99222 1.23785 0.94632 0.99461 0.96902 1.77458 1.03972 1.18139 1.08965 1.42475 1.16805 1.65864 1.11292 1.19259 0.91941 1.27556 0.98016 0.90820 1.24731 0.98078 1.01604 0.96342 1.69666 1.35160 1.48994 1.03977 0.86190 0.84094 0.78838 0.77501 1.20532 1.21917 1.21923 0.94090 0.94835 0.89687 0.93811 0.92527 0.91800 0.91855 0.75273 0.85482 0.86914 0.81046 0.92371 0.92024 0.92284 0.80385 0.78131 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.28 5.61 -26.73 -0.15 -2.43 16 3 C 0.16 2.92 2.59 -67.93 -0.18 2.74 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.71 -11.09 5.39 -60.29 -0.32 -11.42 16 7 C 0.50 8.01 7.86 -10.98 -0.09 7.93 16 8 O -0.53 -10.63 15.72 5.55 0.09 -10.55 16 9 C 0.11 1.41 6.99 -5.19 -0.04 1.37 16 10 N -0.36 -5.09 3.39 -62.54 -0.21 -5.30 16 11 C 0.05 0.64 11.36 -17.22 -0.20 0.44 16 12 C -0.25 -2.90 6.10 -105.05 -0.64 -3.54 16 13 C -0.07 -0.58 10.37 36.00 0.37 -0.21 16 14 C 0.04 0.52 11.96 -17.36 -0.21 0.31 16 15 N -0.27 -4.28 11.66 30.63 0.36 -3.93 16 16 N -0.72 -15.82 4.51 -53.42 -0.24 -16.06 16 17 C -0.24 -5.80 7.75 -15.06 -0.12 -5.92 16 18 H 0.07 1.78 7.32 -52.49 -0.38 1.40 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -25.93 13.06 55.49 0.72 -25.20 16 21 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 32 H 0.41 6.21 8.14 -40.82 -0.33 5.88 16 33 H 0.13 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.18 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.38 9.24 7.80 -40.82 -0.32 8.93 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 346.35 15.07 5.22 5.22 Total: -1.00 -32.05 346.35 -6.82 -38.87 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -6.39 Total: 12.44 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.01 Total: 0.02 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.30 Total: -61.90 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.05 -6.82 -38.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665760618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.883 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.71 seconds