Wall clock time and date at job start Tue Mar 31 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47116 * 2 1 4 4 C 1.35250 * 126.07409 * 84.97091 * 3 2 1 5 5 C 1.40397 * 107.86614 * 180.02562 * 4 3 2 6 6 N 1.40202 * 125.96766 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00095 * 0.02562 * 6 5 4 8 8 O 1.21591 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99598 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99498 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46817 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47022 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47114 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00213 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99842 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00076 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00019 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47466 * 89.99838 * 17 15 13 19 19 H 1.48504 * 109.46863 * 209.99606 * 17 15 13 20 20 H 1.48494 * 109.47292 * 329.99235 * 17 15 13 21 21 N 1.31204 * 108.06063 * 0.02562 * 5 4 3 22 22 N 1.34966 * 126.07077 * 265.00283 * 3 2 1 23 23 C 1.46498 * 125.97383 * 0.23872 * 22 3 2 24 24 H 1.09002 * 109.47519 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47472 * 299.99676 * 1 2 3 26 26 H 1.09000 * 109.47151 * 60.00241 * 1 2 3 27 27 H 1.08997 * 109.47238 * 239.99579 * 2 1 3 28 28 H 1.09000 * 109.47151 * 119.99759 * 2 1 3 29 29 H 1.08002 * 126.06399 * 359.97438 * 4 3 2 30 30 H 0.97006 * 119.99507 * 180.02562 * 6 5 4 31 31 H 0.97000 * 120.00453 * 0.02562 * 9 7 6 32 32 H 1.08998 * 109.47335 * 300.00457 * 10 9 7 33 33 H 1.09003 * 109.46904 * 60.00960 * 10 9 7 34 34 H 1.08998 * 109.47490 * 300.00300 * 11 10 9 35 35 H 1.09006 * 109.47130 * 60.00673 * 11 10 9 36 36 H 1.08998 * 109.47232 * 300.00457 * 12 11 10 37 37 H 1.09003 * 109.47243 * 59.99990 * 12 11 10 38 38 H 0.96995 * 120.00080 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.47159 * 269.71629 * 23 22 3 40 40 H 1.08997 * 109.47380 * 29.71390 * 23 22 3 41 41 H 1.09000 * 109.47405 * 149.71985 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2074 2.2035 1.0890 5 6 2.6876 3.4483 0.6519 6 7 2.9981 4.5443 1.4693 7 6 2.8420 4.4544 2.8049 8 8 2.4316 3.4230 3.3011 9 7 3.1410 5.5079 3.5906 10 6 2.9708 5.4103 5.0425 11 6 3.3772 6.7339 5.6936 12 6 3.2001 6.6319 7.2099 13 6 3.5997 7.9358 7.8512 14 1 3.9458 8.7551 7.2386 15 6 3.5245 8.0823 9.2201 16 7 3.8727 9.2204 9.7797 17 14 2.9279 6.6645 10.2798 18 1 4.0855 5.8261 10.6825 19 1 2.2591 7.2003 11.4927 20 1 1.9646 5.8400 9.5070 21 7 2.7941 3.4071 -0.6552 22 7 2.3868 2.1383 -1.0868 23 6 2.3460 1.6737 -2.4755 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0116 1.9214 2.1129 30 1 3.3252 5.3673 1.0734 31 1 3.4681 6.3308 3.1949 32 1 1.9268 5.1981 5.2726 33 1 3.5986 4.6073 5.4288 34 1 4.4211 6.9466 5.4636 35 1 2.7491 7.5368 5.3074 36 1 2.1562 6.4190 7.4403 37 1 3.8283 5.8291 7.5959 38 1 3.8201 9.3234 10.7428 39 1 3.3020 1.2184 -2.7345 40 1 1.5503 0.9375 -2.5892 41 1 2.1556 2.5195 -3.1362 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672991611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:09 Heat of formation + Delta-G solvation = 13.659665 kcal Electronic energy + Delta-G solvation = -20914.667375 eV Core-core repulsion = 17637.196722 eV Total energy + Delta-G solvation = -3277.470652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.49069 -41.01082 -37.26231 -36.23816 -35.19686 -34.61664 -33.59009 -32.77336 -30.02236 -29.01526 -27.06485 -24.95165 -24.57461 -22.80141 -22.23587 -21.35949 -21.02913 -19.16178 -18.78311 -17.93085 -17.15488 -17.08143 -16.46877 -16.37860 -15.88020 -15.67193 -15.52422 -15.08432 -14.77714 -14.69995 -14.10273 -13.96014 -13.77454 -13.60533 -13.36021 -13.29812 -12.71933 -12.67953 -12.45919 -12.03931 -11.88021 -11.75523 -11.70865 -11.62192 -11.55984 -11.30502 -11.18525 -10.74075 -10.20642 -9.71653 -9.16192 -8.27443 -6.31229 0.77500 1.01204 1.39205 1.40791 1.52722 1.54521 1.92161 2.29675 2.38497 3.08481 3.08987 3.60793 3.80077 4.08874 4.13853 4.24863 4.37741 4.47145 4.49411 4.52942 4.58903 4.67820 4.74314 4.79464 4.89612 4.92934 5.04647 5.05809 5.08432 5.18548 5.35977 5.40751 5.53317 5.59254 5.67088 5.72574 5.84144 6.14832 6.29572 6.58253 6.77090 6.99626 7.33529 7.38483 8.88951 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037354 B = 0.002565 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.413714 B =10912.203110 C =11551.402472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C 0.106 3.894 4 C -0.301 4.301 5 C 0.303 3.697 6 N -0.640 5.640 7 C 0.710 3.290 8 O -0.602 6.602 9 N -0.721 5.721 10 C 0.147 3.853 11 C -0.100 4.100 12 C -0.012 4.012 13 C -0.530 4.530 14 H 0.037 0.963 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.948 3.052 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.245 1.245 21 N -0.352 5.352 22 N -0.368 5.368 23 C 0.093 3.907 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.151 0.849 30 H 0.424 0.576 31 H 0.414 0.586 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.023 0.977 37 H 0.021 0.979 38 H 0.266 0.734 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 -19.862 -26.603 33.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 C -0.023 4.023 4 C -0.331 4.331 5 C 0.048 3.952 6 N -0.292 5.292 7 C 0.409 3.591 8 O -0.480 6.480 9 N -0.377 5.377 10 C 0.023 3.977 11 C -0.138 4.138 12 C -0.050 4.050 13 C -0.568 4.568 14 H 0.055 0.945 15 C -0.194 4.194 16 N -0.592 5.592 17 Si 0.772 3.228 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.169 1.169 21 N -0.182 5.182 22 N -0.152 5.152 23 C -0.046 4.046 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.169 0.831 30 H 0.261 0.739 31 H 0.250 0.750 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.134 0.866 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.105 -20.054 -27.118 34.112 hybrid contribution 0.169 0.723 1.307 1.503 sum -4.937 -19.331 -25.811 32.623 Atomic orbital electron populations 1.21722 0.93221 1.03347 1.01872 1.20377 0.96986 0.86881 1.05477 1.21565 0.97854 0.96774 0.86075 1.21568 1.16954 0.93673 1.00945 1.18985 0.98066 0.88826 0.89316 1.41469 1.68563 1.15077 1.04083 1.15790 0.78726 0.84168 0.80417 1.90841 1.52914 1.30304 1.73946 1.45006 1.70258 1.15188 1.07226 1.21257 1.01191 0.98399 0.76888 1.21488 1.01623 0.95278 0.95446 1.19467 0.96895 0.95298 0.93376 1.21474 1.43462 0.99356 0.92474 0.94462 1.26007 0.95116 0.98480 0.99807 1.70064 1.50496 1.27200 1.11474 0.85685 0.79634 0.79481 0.78040 1.19269 1.21198 1.16889 1.77230 1.29993 1.01947 1.09068 1.48342 1.51197 1.07900 1.07729 1.22231 1.05031 1.01789 0.75582 0.89520 0.93810 0.92430 0.87713 0.88763 0.83114 0.73860 0.74963 0.92094 0.92008 0.91615 0.91630 0.95912 0.96019 0.92566 0.89299 0.86640 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.06 -0.68 6.03 29.84 0.18 -0.50 16 3 C 0.11 2.20 6.18 41.39 0.26 2.46 16 4 C -0.30 -8.57 9.52 22.11 0.21 -8.36 16 5 C 0.30 8.66 8.11 133.31 1.08 9.74 16 6 N -0.64 -16.24 5.46 -321.24 -1.75 -17.99 16 7 C 0.71 21.11 8.53 179.06 1.53 22.64 16 8 O -0.60 -22.18 13.47 -4.00 -0.05 -22.23 16 9 N -0.72 -18.80 5.56 -478.51 -2.66 -21.46 16 10 C 0.15 4.56 5.67 86.38 0.49 5.05 16 11 C -0.10 -3.55 5.27 30.59 0.16 -3.39 16 12 C -0.01 -0.56 4.04 29.85 0.12 -0.43 16 13 C -0.53 -29.95 9.66 25.60 0.25 -29.70 16 14 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 15 C 0.00 0.15 5.47 84.65 0.46 0.61 16 16 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 17 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 21 N -0.35 -9.23 12.59 -54.44 -0.69 -9.91 16 22 N -0.37 -7.31 4.01 -356.08 -1.43 -8.74 16 23 C 0.09 0.82 11.06 127.77 1.41 2.23 16 24 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 0.61 7.48 -2.39 -0.02 0.59 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.15 4.95 5.91 -2.91 -0.02 4.94 16 30 H 0.42 7.98 8.84 -92.70 -0.82 7.17 16 31 H 0.41 8.21 8.49 -92.71 -0.79 7.42 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 37 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.12 0.34 7.53 -2.39 -0.02 0.32 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -77.69 343.44 1.85 -75.84 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.62 Total: 18.07 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 6.86 Total: -0.47 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -6.23 Total: -117.39 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -77.69 1.85 -75.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672991611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.498 kcal (2) G-P(sol) polarization free energy of solvation -77.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds