Wall clock time and date at job start Tue Mar 31 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00140 * 2 1 4 4 C 1.52997 * 109.46981 * 269.72869 * 3 2 1 5 5 C 1.53002 * 109.46892 * 299.99533 * 4 3 2 6 6 C 1.52992 * 109.47797 * 59.99913 * 4 3 2 7 7 C 1.53007 * 109.47173 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.47341 * 179.97438 * 7 4 3 9 9 C 1.36929 * 120.00113 * 179.97438 * 8 7 4 10 10 H 1.08005 * 120.00011 * 0.02562 * 9 8 7 11 11 C 1.38818 * 120.00006 * 179.97438 * 9 8 7 12 12 N 1.31614 * 120.00101 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99734 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47244 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46687 * 120.00505 * 13 11 9 16 16 H 1.48503 * 109.47284 * 240.00174 * 13 11 9 17 17 C 1.34781 * 119.99489 * 179.72423 * 2 1 3 18 18 O 1.21570 * 119.99148 * 176.57891 * 17 2 1 19 19 C 1.47701 * 120.00426 * 356.57857 * 17 2 1 20 20 C 1.41501 * 126.52017 * 185.69161 * 19 17 2 21 21 C 1.35367 * 105.50579 * 179.90274 * 20 19 17 22 22 N 1.35036 * 107.22717 * 0.35930 * 21 20 19 23 23 H 0.96997 * 124.88414 * 179.76523 * 22 21 20 24 24 N 1.28466 * 110.23106 * 359.76068 * 22 21 20 25 25 H 1.09003 * 109.47252 * 95.66701 * 1 2 3 26 26 H 1.09008 * 109.47390 * 215.66630 * 1 2 3 27 27 H 1.09004 * 109.47158 * 335.66272 * 1 2 3 28 28 H 1.09004 * 109.47254 * 29.72384 * 3 2 1 29 29 H 1.08998 * 109.47044 * 149.72833 * 3 2 1 30 30 H 1.08995 * 109.47137 * 60.00658 * 5 4 3 31 31 H 1.09009 * 109.47080 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47629 * 300.00339 * 5 4 3 33 33 H 1.08999 * 109.47255 * 59.99660 * 6 4 3 34 34 H 1.08996 * 109.48015 * 180.02562 * 6 4 3 35 35 H 1.09007 * 109.47167 * 300.00537 * 6 4 3 36 36 H 1.08999 * 109.46492 * 299.99490 * 7 4 3 37 37 H 1.09002 * 109.47054 * 59.99297 * 7 4 3 38 38 H 0.97002 * 119.99972 * 359.97438 * 8 7 4 39 39 H 0.97003 * 120.00181 * 179.97438 * 12 11 9 40 40 H 1.08002 * 127.24622 * 0.02562 * 20 19 17 41 41 H 1.08001 * 126.38695 * 180.15331 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4584 1.7069 -1.4425 5 6 3.2883 0.6389 -2.1577 6 6 1.1247 1.8881 -2.1697 7 6 3.2241 3.0316 -1.4425 8 7 3.4744 3.4509 -2.8237 9 6 4.1487 4.6161 -3.0739 10 1 4.4963 5.2259 -2.2530 11 6 4.3864 5.0132 -4.3827 12 7 3.9633 4.2699 -5.3830 13 14 5.3057 6.6032 -4.7240 14 1 5.6707 7.2497 -3.4380 15 1 6.5391 6.3059 -5.4958 16 1 4.4385 7.5175 -5.5096 17 6 2.1388 -1.1673 0.0056 18 8 3.3529 -1.1685 -0.0572 19 6 1.4023 -2.4449 0.0881 20 6 1.9673 -3.7358 0.2166 21 6 0.9166 -4.5885 0.2546 22 7 -0.2057 -3.8454 0.1462 23 1 -1.1081 -4.2010 0.1416 24 7 0.0938 -2.5999 0.0502 25 1 -0.3634 -0.1015 -1.0227 26 1 -0.3634 -0.8349 0.5992 27 1 -0.3634 0.9364 0.4235 28 1 1.6063 2.0296 0.5095 29 1 3.1478 1.1395 0.5180 30 1 2.7433 -0.3051 -2.1578 31 1 3.4746 0.9513 -3.1853 32 1 4.2386 0.5097 -1.6397 33 1 0.5334 2.6490 -1.6602 34 1 1.3105 2.1999 -3.1975 35 1 0.5796 0.9442 -2.1697 36 1 2.6332 3.7926 -0.9328 37 1 4.1743 2.9021 -0.9245 38 1 3.1626 2.9031 -3.5610 39 1 4.1290 4.5476 -6.2976 40 1 3.0159 -3.9876 0.2745 41 1 0.9667 -5.6631 0.3501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674818731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:26 Heat of formation + Delta-G solvation = 39.755423 kcal Electronic energy + Delta-G solvation = -22446.946480 eV Core-core repulsion = 19170.607425 eV Total energy + Delta-G solvation = -3276.339056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -43.55597 -41.01852 -38.60674 -36.42952 -34.92073 -32.85509 -32.12718 -31.56749 -28.82958 -28.18817 -27.30399 -27.05727 -24.92393 -23.59175 -22.55754 -20.45435 -19.80080 -19.24222 -19.09395 -17.82308 -17.27115 -16.96784 -16.45177 -16.22346 -15.61204 -15.33430 -15.11327 -14.63672 -14.55938 -14.25750 -14.22403 -13.91655 -13.78566 -13.68416 -13.27205 -12.94096 -12.82517 -12.55633 -12.43299 -12.23334 -12.06358 -11.67464 -11.66204 -11.57638 -11.49055 -11.03170 -10.93017 -10.37101 -10.11400 -9.54731 -8.95698 -7.92825 -5.20717 0.57815 1.27350 1.46996 1.48629 1.58730 1.87963 2.30990 2.39609 2.58054 3.40226 3.41486 3.85107 3.86412 3.97358 4.07228 4.21923 4.28946 4.46998 4.49956 4.57197 4.72154 4.76651 4.79149 4.82045 4.89953 4.92425 4.95511 5.07372 5.16673 5.19557 5.24285 5.37545 5.45575 5.50144 5.54205 5.64590 6.20596 6.29520 6.42464 6.89860 7.20478 7.35721 8.13089 8.37044 9.31368 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040261 B = 0.003444 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.300729 B = 8127.110174 C = 8229.055855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.594 5.594 3 C 0.135 3.865 4 C -0.076 4.076 5 C -0.107 4.107 6 C -0.125 4.125 7 C 0.164 3.836 8 N -0.740 5.740 9 C -0.241 4.241 10 H 0.076 0.924 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.295 1.295 16 H -0.292 1.292 17 C 0.587 3.413 18 O -0.566 6.566 19 C -0.038 4.038 20 C -0.214 4.214 21 C 0.017 3.983 22 N -0.369 5.369 23 H 0.464 0.536 24 N -0.263 5.263 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.027 0.973 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.012 0.988 38 H 0.375 0.625 39 H 0.250 0.750 40 H 0.156 0.844 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.957 -19.436 15.486 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.325 5.325 3 C 0.012 3.988 4 C -0.078 4.078 5 C -0.164 4.164 6 C -0.183 4.183 7 C 0.037 3.963 8 N -0.383 5.383 9 C -0.373 4.373 10 H 0.094 0.906 11 C -0.271 4.271 12 N -0.623 5.623 13 Si 0.804 3.196 14 H -0.190 1.190 15 H -0.223 1.223 16 H -0.219 1.219 17 C 0.375 3.625 18 O -0.444 6.444 19 C -0.197 4.197 20 C -0.242 4.242 21 C -0.128 4.128 22 N -0.086 5.086 23 H 0.313 0.687 24 N -0.102 5.102 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.208 0.792 39 H 0.059 0.941 40 H 0.174 0.826 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -14.209 -18.650 15.445 28.076 hybrid contribution 1.053 0.129 -0.973 1.439 sum -13.156 -18.521 14.473 26.936 Atomic orbital electron populations 1.22367 0.76962 1.04740 1.02841 1.47671 1.08511 1.04839 1.71466 1.21481 0.97784 0.84692 0.94851 1.21016 0.96022 0.94422 0.96329 1.21548 0.98986 0.97131 0.98765 1.21774 0.95532 1.01507 0.99457 1.20732 0.95972 0.93315 0.86276 1.42600 1.67825 1.25125 1.02776 1.19712 1.26781 0.98787 0.92057 0.90631 1.25578 1.03467 1.02532 0.95491 1.69840 1.53530 1.40718 0.98190 0.85040 0.77457 0.79239 0.77829 1.18979 1.22275 1.21879 1.17399 0.86075 0.82863 0.76175 1.90791 1.14586 1.87201 1.51829 1.21853 0.90638 0.95193 1.12044 1.22026 1.01655 0.90695 1.09846 1.23503 0.84444 1.00799 1.04098 1.43650 1.11143 1.03077 1.50714 0.68726 1.73634 1.15324 1.01542 1.19672 0.92607 0.88172 0.89415 0.87462 0.91098 0.93800 0.95344 0.94160 0.91577 0.95044 0.91605 0.95079 0.96998 0.79169 0.94111 0.82600 0.75238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 8.54 127.77 1.09 2.52 16 2 N -0.59 -15.89 2.39 -850.34 -2.03 -17.92 16 3 C 0.14 3.92 4.62 86.38 0.40 4.32 16 4 C -0.08 -2.74 0.60 -52.18 -0.03 -2.77 16 5 C -0.11 -4.37 6.91 71.98 0.50 -3.88 16 6 C -0.13 -4.21 7.71 71.98 0.56 -3.66 16 7 C 0.16 7.04 5.15 86.38 0.44 7.49 16 8 N -0.74 -39.82 5.00 -343.44 -1.72 -41.54 16 9 C -0.24 -14.12 9.99 84.04 0.84 -13.28 16 10 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 11 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 12 N -0.97 -61.91 13.06 21.65 0.28 -61.63 16 13 Si 0.98 47.92 29.55 68.60 2.03 49.95 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 16 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 17 C 0.59 18.12 6.20 86.74 0.54 18.66 16 18 O -0.57 -21.59 14.42 -3.93 -0.06 -21.64 16 19 C -0.04 -0.94 6.83 42.45 0.29 -0.65 16 20 C -0.21 -4.21 10.81 22.41 0.24 -3.96 16 21 C 0.02 0.16 12.02 83.54 1.00 1.17 16 22 N -0.37 -3.64 6.83 -57.51 -0.39 -4.03 16 23 H 0.46 0.53 8.96 -220.00 -1.97 -1.44 16 24 N -0.26 -4.86 8.74 -48.18 -0.42 -5.28 16 25 H 0.06 1.14 6.55 -2.39 -0.02 1.12 16 26 H 0.10 1.81 5.30 -2.38 -0.01 1.80 16 27 H 0.09 1.36 7.83 -2.39 -0.02 1.35 16 28 H 0.11 2.48 7.85 -2.39 -0.02 2.46 16 29 H 0.07 2.27 7.47 -2.39 -0.02 2.25 16 30 H 0.04 1.72 6.09 -2.39 -0.01 1.70 16 31 H 0.03 1.29 6.86 -2.38 -0.02 1.28 16 32 H 0.04 1.75 7.65 -2.39 -0.02 1.73 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 35 H 0.07 1.94 5.46 -2.38 -0.01 1.93 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.37 21.54 5.36 -92.71 -0.50 21.05 16 39 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.23 -0.09 8.06 -2.91 -0.02 -0.11 16 Total: -1.00 -79.85 325.14 2.61 -77.23 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -1.41 Total: 23.16 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 6.34 Total: 1.71 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -4.28 Total: -130.40 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.06 Total: -21.64 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -79.85 2.61 -77.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674818731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.987 kcal (2) G-P(sol) polarization free energy of solvation -79.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds