Wall clock time and date at job start Tue Mar 31 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30496 * 125.65221 * 2 1 4 4 C 1.34123 * 109.25909 * 180.29301 * 3 2 1 5 5 C 1.34671 * 108.02317 * 359.72885 * 4 3 2 6 6 N 1.35045 * 125.64806 * 179.83266 * 2 1 3 7 7 C 1.46494 * 126.40043 * 359.96916 * 6 2 1 8 8 C 1.50701 * 109.47057 * 84.71770 * 7 6 2 9 9 O 1.21284 * 119.99898 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00311 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00385 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47044 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47068 * 65.00328 * 12 11 10 14 14 C 1.53002 * 109.46851 * 184.99795 * 12 11 10 15 15 N 1.46499 * 109.47334 * 304.99713 * 12 11 10 16 16 C 1.46500 * 119.99944 * 300.00337 * 15 12 11 17 17 C 1.36931 * 119.99483 * 119.72731 * 15 12 11 18 18 H 1.07999 * 120.00398 * 21.93443 * 17 15 12 19 19 C 1.38818 * 119.99813 * 201.93553 * 17 15 12 20 20 N 1.31619 * 119.99868 * 12.87698 * 19 17 15 21 21 Si 1.86803 * 119.99901 * 192.88067 * 19 17 15 22 22 H 1.48494 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46822 * 120.00070 * 21 19 17 24 24 H 1.48501 * 109.46893 * 239.99633 * 21 19 17 25 25 H 1.09002 * 109.47352 * 270.17215 * 1 2 3 26 26 H 1.09001 * 109.47378 * 30.17504 * 1 2 3 27 27 H 1.09008 * 109.47364 * 150.16905 * 1 2 3 28 28 H 1.07997 * 125.99333 * 179.72750 * 4 3 2 29 29 H 1.07994 * 126.59714 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47167 * 324.71847 * 7 6 2 31 31 H 1.08996 * 109.47603 * 204.71814 * 7 6 2 32 32 H 0.97001 * 119.99429 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47164 * 59.99715 * 11 10 8 34 34 H 1.08996 * 109.46780 * 300.00188 * 11 10 8 35 35 H 1.08994 * 109.47271 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.47266 * 300.00445 * 14 12 11 37 37 H 1.09006 * 109.46931 * 60.00160 * 14 12 11 38 38 H 1.09004 * 109.47091 * 94.27526 * 16 15 12 39 39 H 1.09004 * 109.46679 * 214.27549 * 16 15 12 40 40 H 1.08998 * 109.47180 * 334.27263 * 16 15 12 41 41 H 0.97001 * 119.99790 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0065 5 6 3.5926 -0.6643 -0.0046 6 7 2.2940 -1.0974 0.0032 7 6 1.8425 -2.4910 0.0079 8 6 1.5626 -2.9331 -1.4053 9 8 1.7248 -2.1603 -2.3259 10 7 1.1320 -4.1873 -1.6464 11 6 0.8605 -4.6173 -3.0203 12 6 0.3888 -6.0727 -3.0153 13 1 -0.5674 -6.1430 -2.4969 14 6 0.2248 -6.5605 -4.4562 15 7 1.3794 -6.9048 -2.3279 16 6 2.7519 -6.9793 -2.8348 17 6 1.0238 -7.6085 -1.2083 18 1 -0.0139 -7.8466 -1.0270 19 6 1.9972 -8.0158 -0.3063 20 7 3.2141 -7.5201 -0.3828 21 14 1.5799 -9.2675 1.0161 22 1 0.1551 -9.6659 0.8886 23 1 2.4452 -10.4637 0.8561 24 1 1.8077 -8.6674 2.3552 25 1 -0.3634 0.0031 1.0277 26 1 -0.3634 0.8884 -0.5165 27 1 -0.3634 -0.8915 -0.5112 28 1 4.4097 1.3410 -0.0122 29 1 4.4776 -1.2832 -0.0089 30 1 0.9327 -2.5762 0.6022 31 1 2.6187 -3.1230 0.4393 32 1 1.0020 -4.8053 -0.9101 33 1 1.7706 -4.5327 -3.6141 34 1 0.0848 -3.9850 -3.4522 35 1 -0.1108 -7.5975 -4.4527 36 1 -0.5122 -5.9414 -4.9677 37 1 1.1810 -6.4902 -4.9747 38 1 3.3715 -6.2486 -2.3146 39 1 3.1487 -7.9799 -2.6633 40 1 2.7567 -6.7647 -3.9034 41 1 3.8941 -7.8045 0.2477 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675044100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:20 Heat of formation + Delta-G solvation = 30.293273 kcal Electronic energy + Delta-G solvation = -22482.699385 eV Core-core repulsion = 19205.950019 eV Total energy + Delta-G solvation = -3276.749365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -43.09764 -40.62940 -38.42092 -35.42071 -34.97807 -33.76935 -32.63401 -31.16615 -29.37673 -28.00132 -27.73207 -26.51380 -24.87102 -22.41099 -21.86159 -21.10967 -20.48513 -18.83707 -18.42225 -18.16609 -17.12125 -16.73525 -16.45105 -16.07137 -15.80668 -15.24805 -14.91199 -14.70066 -14.64345 -14.33348 -13.95009 -13.91213 -13.67351 -13.46635 -13.35275 -13.20807 -13.07772 -12.84096 -12.60707 -12.47976 -12.27865 -12.04861 -11.73112 -11.47891 -11.42163 -11.02002 -10.60685 -10.47038 -9.99528 -9.28160 -8.77787 -7.76472 -5.24327 0.99290 1.49495 1.50402 1.55989 1.61841 1.69719 2.16897 2.40568 2.54557 3.37914 3.59992 3.62650 3.70402 3.74140 3.91381 4.06846 4.11083 4.39345 4.42879 4.55324 4.61842 4.69575 4.70642 4.81903 4.83854 4.84695 4.99941 5.08745 5.27626 5.31665 5.32167 5.44322 5.58485 5.71586 5.76146 5.81728 6.18044 6.36607 6.58616 7.11613 7.18169 7.20048 7.90818 8.36511 9.25078 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.004779 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.222725 B = 5857.121962 C = 6615.894503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.204 3.796 3 N -0.530 5.530 4 C -0.048 4.048 5 C -0.059 4.059 6 N -0.442 5.442 7 C 0.089 3.911 8 C 0.495 3.505 9 O -0.581 6.581 10 N -0.693 5.693 11 C 0.116 3.884 12 C 0.158 3.842 13 H 0.079 0.921 14 C -0.151 4.151 15 N -0.602 5.602 16 C 0.182 3.818 17 C -0.255 4.255 18 H 0.076 0.924 19 C -0.039 4.039 20 N -0.930 5.930 21 Si 0.956 3.044 22 H -0.269 1.269 23 H -0.304 1.304 24 H -0.293 1.293 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.188 0.812 29 H 0.190 0.810 30 H 0.152 0.848 31 H 0.136 0.864 32 H 0.415 0.585 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.002 0.998 39 H 0.013 0.987 40 H 0.019 0.981 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 7.543 0.871 9.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 N -0.250 5.250 4 C -0.194 4.194 5 C -0.192 4.192 6 N -0.125 5.125 7 C -0.037 4.037 8 C 0.280 3.720 9 O -0.462 6.462 10 N -0.343 5.343 11 C -0.010 4.010 12 C 0.050 3.950 13 H 0.097 0.903 14 C -0.210 4.210 15 N -0.325 5.325 16 C 0.037 3.963 17 C -0.385 4.385 18 H 0.093 0.907 19 C -0.235 4.235 20 N -0.577 5.577 21 Si 0.786 3.214 22 H -0.193 1.193 23 H -0.232 1.232 24 H -0.220 1.220 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.205 0.795 29 H 0.207 0.793 30 H 0.170 0.830 31 H 0.153 0.847 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.032 0.968 40 H 0.038 0.962 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.777 8.673 0.314 10.425 hybrid contribution 0.934 -2.013 0.886 2.389 sum -4.842 6.660 1.200 8.321 Atomic orbital electron populations 1.20291 0.83095 1.04317 1.04721 1.23864 0.96992 0.81155 1.03871 1.70188 1.03238 1.29284 1.22305 1.22620 0.94986 0.93403 1.08406 1.23093 0.87616 0.97218 1.11248 1.45003 1.06826 1.06544 1.54131 1.21818 1.06173 0.80702 0.95033 1.21011 0.77137 0.82317 0.91572 1.90718 1.54162 1.54403 1.46935 1.45803 1.65413 1.12235 1.10860 1.21865 0.99605 0.97198 0.82377 1.20832 0.92920 0.87190 0.94016 0.90315 1.22077 1.01482 1.01437 0.96029 1.44097 1.07104 1.52093 1.29238 1.20409 0.85392 0.98087 0.92418 1.19539 0.93540 1.27514 0.97926 0.90675 1.25529 0.96394 1.01829 0.99756 1.70232 1.03443 1.45257 1.38726 0.85381 0.77578 0.79030 0.79399 1.19317 1.23208 1.22024 0.87810 0.89077 0.90690 0.79518 0.79315 0.83030 0.84656 0.74825 0.94382 0.91119 0.92730 0.90523 0.93581 0.97980 0.96801 0.96231 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.04 71.23 0.72 -0.69 16 2 C 0.20 6.04 7.88 138.13 1.09 7.13 16 3 N -0.53 -17.56 11.25 -188.14 -2.12 -19.68 16 4 C -0.05 -1.41 11.87 83.52 0.99 -0.42 16 5 C -0.06 -1.70 11.58 83.08 0.96 -0.74 16 6 N -0.44 -12.72 2.24 -518.36 -1.16 -13.89 16 7 C 0.09 2.22 6.15 85.63 0.53 2.75 16 8 C 0.49 16.00 7.90 87.66 0.69 16.69 16 9 O -0.58 -23.37 16.42 -3.04 -0.05 -23.42 16 10 N -0.69 -22.50 5.39 -463.07 -2.49 -25.00 16 11 C 0.12 3.79 4.97 86.38 0.43 4.22 16 12 C 0.16 5.24 2.87 44.99 0.13 5.37 16 13 H 0.08 2.50 7.86 -2.39 -0.02 2.48 16 14 C -0.15 -4.31 9.18 71.98 0.66 -3.65 16 15 N -0.60 -25.37 2.29 -702.78 -1.61 -26.98 16 16 C 0.18 8.23 8.10 127.77 1.04 9.27 16 17 C -0.26 -11.80 9.32 84.04 0.78 -11.01 16 18 H 0.08 3.36 7.81 -2.91 -0.02 3.33 16 19 C -0.04 -1.91 5.10 84.86 0.43 -1.47 16 20 N -0.93 -48.59 10.63 21.65 0.23 -48.36 16 21 Si 0.96 40.37 29.57 68.60 2.03 42.40 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.07 1.53 7.84 -2.38 -0.02 1.51 16 28 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.19 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.15 2.73 7.94 -2.39 -0.02 2.72 16 31 H 0.14 3.17 8.13 -2.39 -0.02 3.15 16 32 H 0.41 13.87 7.88 -92.71 -0.73 13.14 16 33 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.37 6.66 -2.38 -0.02 1.35 16 38 H 0.00 0.10 7.41 -2.39 -0.02 0.08 16 39 H 0.01 0.67 7.21 -2.38 -0.02 0.66 16 40 H 0.02 0.78 6.43 -2.39 -0.02 0.77 16 41 H 0.25 12.75 8.31 -92.71 -0.77 11.97 16 Total: -1.00 -65.31 342.22 3.56 -61.74 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.29 Total: 25.73 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 8.45 Total: 27.44 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -7.16 Total: -133.90 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -65.31 3.56 -61.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675044100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.037 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds