Wall clock time and date at job start Tue Mar 31 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50694 * 109.47360 * 2 1 4 4 N 1.30457 * 125.99029 * 270.30231 * 3 2 1 5 5 N 1.39936 * 108.89359 * 180.14758 * 4 3 2 6 6 C 1.46498 * 125.74932 * 179.84764 * 5 4 3 7 7 C 1.34256 * 108.49659 * 359.58664 * 5 4 3 8 8 C 1.38049 * 107.41637 * 0.24229 * 7 5 4 9 9 C 1.47431 * 126.41490 * 179.97438 * 8 7 5 10 10 O 1.21604 * 120.00047 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99865 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99958 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46975 * 179.97438 * 12 11 9 14 14 N 1.46506 * 109.46998 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00135 * 270.00040 * 14 13 12 16 16 C 1.36937 * 119.99631 * 89.99686 * 14 13 12 17 17 H 1.08002 * 120.00111 * 20.36959 * 16 14 13 18 18 C 1.38813 * 119.99984 * 200.36228 * 16 14 13 19 19 N 1.31621 * 119.99669 * 14.99211 * 18 16 14 20 20 Si 1.86794 * 120.00160 * 194.99302 * 18 16 14 21 21 H 1.48498 * 109.47398 * 85.00065 * 20 18 16 22 22 H 1.48498 * 109.47248 * 205.00554 * 20 18 16 23 23 H 1.48508 * 109.47237 * 325.00131 * 20 18 16 24 24 H 1.08999 * 109.47414 * 59.99532 * 1 2 3 25 25 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47148 * 300.00030 * 1 2 3 27 27 H 1.09006 * 109.47148 * 239.99970 * 2 1 3 28 28 H 1.08999 * 109.47414 * 120.00468 * 2 1 3 29 29 H 1.08998 * 109.47532 * 269.69472 * 6 5 4 30 30 H 1.09003 * 109.46859 * 29.69759 * 6 5 4 31 31 H 1.09002 * 109.47306 * 149.69463 * 6 5 4 32 32 H 1.07997 * 126.28999 * 180.21866 * 7 5 4 33 33 H 0.96998 * 119.99913 * 359.97438 * 11 9 8 34 34 H 1.09003 * 109.46336 * 299.99418 * 12 11 9 35 35 H 1.08999 * 109.47296 * 59.99548 * 12 11 9 36 36 H 1.09000 * 109.47654 * 299.99581 * 13 12 11 37 37 H 1.08999 * 109.47401 * 59.99707 * 13 12 11 38 38 H 1.08994 * 109.47293 * 95.09503 * 15 14 13 39 39 H 1.09005 * 109.47250 * 215.09655 * 15 14 13 40 40 H 1.09006 * 109.47365 * 335.09529 * 15 14 13 41 41 H 0.97002 * 119.99453 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2826 2.1454 -1.0555 5 7 2.7338 3.4045 -0.6442 6 6 3.1226 4.5055 -1.5290 7 6 2.7447 3.4355 0.6980 8 6 2.3091 2.2035 1.1433 9 6 2.1610 1.7831 2.5486 10 8 1.7655 0.6632 2.8098 11 7 2.4640 2.6399 3.5438 12 6 2.3174 2.2220 4.9403 13 6 2.7248 3.3728 5.8624 14 7 2.5776 2.9551 7.2589 15 6 1.3080 3.1693 7.9576 16 6 3.6269 2.3644 7.9110 17 1 4.6338 2.4944 7.5426 18 6 3.3964 1.5987 9.0457 19 7 2.1768 1.1934 9.3295 20 14 4.8171 1.1437 10.1699 21 1 5.0567 2.2459 11.1358 22 1 4.4840 -0.0997 10.9102 23 1 6.0404 0.9232 9.3572 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.1880 4.4363 -1.7485 30 1 2.5555 4.4428 -2.4577 31 1 2.9136 5.4565 -1.0391 32 1 3.0404 4.2705 1.3157 33 1 2.7799 3.5331 3.3354 34 1 1.2786 1.9528 5.1317 35 1 2.9572 1.3603 5.1307 36 1 3.7636 3.6417 5.6709 37 1 2.0854 4.2348 5.6720 38 1 0.7027 2.2648 7.8968 39 1 1.5041 3.4055 9.0035 40 1 0.7723 3.9968 7.4925 41 1 2.0157 0.6586 10.1226 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690950444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:37 Heat of formation + Delta-G solvation = 57.099853 kcal Electronic energy + Delta-G solvation = -21606.266649 eV Core-core repulsion = 18330.679704 eV Total energy + Delta-G solvation = -3275.586945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51065 -38.78531 -36.01264 -34.83306 -33.95589 -31.97246 -31.34382 -30.42833 -28.01382 -26.93163 -25.84442 -24.04794 -23.10521 -22.16576 -20.63346 -20.13642 -19.45411 -17.63947 -16.72757 -15.98769 -15.88151 -15.30518 -14.78613 -14.74993 -14.59471 -14.19012 -13.76983 -13.59763 -13.30810 -13.11039 -13.02181 -12.82543 -12.31108 -12.25095 -12.05713 -11.47942 -11.19469 -11.15341 -10.85491 -10.82104 -10.74593 -10.57240 -10.26397 -9.97311 -9.87149 -9.52431 -9.44670 -8.81088 -8.55417 -8.43438 -6.82661 -5.72805 -3.17861 1.42210 2.16671 2.17151 3.39942 3.45772 3.47712 3.64525 3.71609 4.16340 4.43178 4.52457 4.68568 4.77069 5.01969 5.06161 5.26780 5.35871 5.42131 5.44829 5.56523 5.64697 5.66662 5.91257 5.98702 6.04266 6.17564 6.29123 6.30140 6.48438 6.62919 6.71923 6.75824 6.81999 7.05294 7.36629 7.47477 7.72563 7.81699 7.95565 8.37623 8.67498 9.22168 9.85153 10.32484 11.32354 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.003391 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.942220 B = 8254.365232 C = 8696.776262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.135 3.865 4 N -0.304 5.304 5 N -0.366 5.366 6 C 0.098 3.902 7 C 0.094 3.906 8 C -0.279 4.279 9 C 0.585 3.415 10 O -0.540 6.540 11 N -0.724 5.724 12 C 0.097 3.903 13 C 0.144 3.856 14 N -0.596 5.596 15 C 0.162 3.838 16 C -0.261 4.261 17 H 0.071 0.929 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.280 1.280 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.390 0.610 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.045 0.955 40 H -0.001 1.001 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 7.781 -20.610 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.032 4.032 4 N -0.126 5.126 5 N -0.144 5.144 6 C -0.043 4.043 7 C -0.057 4.057 8 C -0.294 4.294 9 C 0.371 3.629 10 O -0.418 6.418 11 N -0.375 5.375 12 C -0.029 4.029 13 C 0.016 3.984 14 N -0.319 5.319 15 C 0.017 3.983 16 C -0.390 4.390 17 H 0.089 0.911 18 C -0.196 4.196 19 N -0.549 5.549 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.205 1.205 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.200 0.800 33 H 0.222 0.778 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.017 0.983 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.216 7.055 -21.592 22.716 hybrid contribution 0.949 0.280 1.378 1.696 sum 0.733 7.335 -20.214 21.516 Atomic orbital electron populations 1.21606 0.94033 1.02044 1.01884 1.20122 0.96505 0.88049 1.04075 1.22479 0.95107 0.96875 0.88773 1.77164 1.22180 0.90518 1.22706 1.48268 1.49680 1.11723 1.04740 1.21952 1.01708 0.85904 0.94705 1.23085 0.98376 0.99017 0.85194 1.20445 1.18675 0.95273 0.94999 1.17273 0.77429 0.84862 0.83315 1.90749 1.46845 1.20058 1.84161 1.46021 1.68001 1.16233 1.07243 1.22488 1.01886 1.01066 0.77419 1.20985 0.98762 0.93526 0.85160 1.43945 1.12506 1.70070 1.05366 1.20843 0.86060 0.95841 0.95557 1.19223 0.87022 1.25046 1.07735 0.91136 1.25003 0.96531 0.97671 1.00360 1.70091 1.19216 1.38339 1.27225 0.86248 0.81740 0.77518 0.80874 1.21446 1.21705 1.20518 0.93202 0.91919 0.92052 0.90862 0.87898 0.90346 0.89030 0.89133 0.80039 0.77772 0.92169 0.91304 0.93396 0.94061 0.95089 0.93642 0.98269 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 37.15 0.37 -1.29 16 2 C -0.05 -0.63 5.97 -27.89 -0.17 -0.80 16 3 C 0.14 1.91 6.52 -82.02 -0.53 1.38 16 4 N -0.30 -4.04 12.50 33.90 0.42 -3.61 16 5 N -0.37 -3.70 3.98 -67.60 -0.27 -3.97 16 6 C 0.10 0.50 11.44 59.85 0.68 1.18 16 7 C 0.09 0.95 10.99 -16.56 -0.18 0.77 16 8 C -0.28 -3.89 6.13 -105.06 -0.64 -4.53 16 9 C 0.58 9.82 7.81 -12.52 -0.10 9.72 16 10 O -0.54 -11.09 14.92 5.27 0.08 -11.01 16 11 N -0.72 -11.09 5.54 -61.38 -0.34 -11.43 16 12 C 0.10 1.89 6.00 -4.04 -0.02 1.87 16 13 C 0.14 2.81 5.82 -4.04 -0.02 2.79 16 14 N -0.60 -14.85 2.93 -181.12 -0.53 -15.38 16 15 C 0.16 3.97 9.02 59.84 0.54 4.51 16 16 C -0.26 -7.14 9.68 -15.06 -0.15 -7.29 16 17 H 0.07 1.88 7.86 -52.49 -0.41 1.46 16 18 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 19 N -0.90 -26.54 10.67 55.49 0.59 -25.95 16 20 Si 0.91 21.93 29.58 -169.99 -5.03 16.90 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.53 6.55 -51.93 -0.34 1.19 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.18 1.08 7.46 -52.49 -0.39 0.68 16 33 H 0.39 4.45 7.40 -40.82 -0.30 4.15 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 37 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 38 H 0.03 0.83 7.40 -51.93 -0.38 0.44 16 39 H 0.04 1.19 7.21 -51.93 -0.37 0.82 16 40 H 0.00 -0.03 7.83 -51.93 -0.41 -0.43 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -34.94 344.96 -6.57 -41.51 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.38 Total: -0.56 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.31 Total: 8.31 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.12 Total: -60.35 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.94 -6.57 -41.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690950444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.607 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds