Wall clock time and date at job start Tue Mar 31 2020 01:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50694 * 109.47360 * 2 1 4 4 N 1.30457 * 125.99029 * 270.30231 * 3 2 1 5 5 N 1.39936 * 108.89359 * 180.14758 * 4 3 2 6 6 C 1.46498 * 125.74932 * 179.84764 * 5 4 3 7 7 C 1.34256 * 108.49659 * 359.58664 * 5 4 3 8 8 C 1.38049 * 107.41637 * 0.24229 * 7 5 4 9 9 C 1.47431 * 126.41490 * 179.97438 * 8 7 5 10 10 O 1.21604 * 120.00047 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99865 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99958 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46975 * 179.97438 * 12 11 9 14 14 N 1.46506 * 109.46998 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00135 * 270.00040 * 14 13 12 16 16 C 1.36937 * 119.99631 * 89.99686 * 14 13 12 17 17 H 1.08002 * 120.00111 * 20.36959 * 16 14 13 18 18 C 1.38813 * 119.99984 * 200.36228 * 16 14 13 19 19 N 1.31621 * 119.99669 * 14.99211 * 18 16 14 20 20 Si 1.86794 * 120.00160 * 194.99302 * 18 16 14 21 21 H 1.48498 * 109.47398 * 85.00065 * 20 18 16 22 22 H 1.48498 * 109.47248 * 205.00554 * 20 18 16 23 23 H 1.48508 * 109.47237 * 325.00131 * 20 18 16 24 24 H 1.08999 * 109.47414 * 59.99532 * 1 2 3 25 25 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47148 * 300.00030 * 1 2 3 27 27 H 1.09006 * 109.47148 * 239.99970 * 2 1 3 28 28 H 1.08999 * 109.47414 * 120.00468 * 2 1 3 29 29 H 1.08998 * 109.47532 * 269.69472 * 6 5 4 30 30 H 1.09003 * 109.46859 * 29.69759 * 6 5 4 31 31 H 1.09002 * 109.47306 * 149.69463 * 6 5 4 32 32 H 1.07997 * 126.28999 * 180.21866 * 7 5 4 33 33 H 0.96998 * 119.99913 * 359.97438 * 11 9 8 34 34 H 1.09003 * 109.46336 * 299.99418 * 12 11 9 35 35 H 1.08999 * 109.47296 * 59.99548 * 12 11 9 36 36 H 1.09000 * 109.47654 * 299.99581 * 13 12 11 37 37 H 1.08999 * 109.47401 * 59.99707 * 13 12 11 38 38 H 1.08994 * 109.47293 * 95.09503 * 15 14 13 39 39 H 1.09005 * 109.47250 * 215.09655 * 15 14 13 40 40 H 1.09006 * 109.47365 * 335.09529 * 15 14 13 41 41 H 0.97002 * 119.99453 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2826 2.1454 -1.0555 5 7 2.7338 3.4045 -0.6442 6 6 3.1226 4.5055 -1.5290 7 6 2.7447 3.4355 0.6980 8 6 2.3091 2.2035 1.1433 9 6 2.1610 1.7831 2.5486 10 8 1.7655 0.6632 2.8098 11 7 2.4640 2.6399 3.5438 12 6 2.3174 2.2220 4.9403 13 6 2.7248 3.3728 5.8624 14 7 2.5776 2.9551 7.2589 15 6 1.3080 3.1693 7.9576 16 6 3.6269 2.3644 7.9110 17 1 4.6338 2.4944 7.5426 18 6 3.3964 1.5987 9.0457 19 7 2.1768 1.1934 9.3295 20 14 4.8171 1.1437 10.1699 21 1 5.0567 2.2459 11.1358 22 1 4.4840 -0.0997 10.9102 23 1 6.0404 0.9232 9.3572 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.1880 4.4363 -1.7485 30 1 2.5555 4.4428 -2.4577 31 1 2.9136 5.4565 -1.0391 32 1 3.0404 4.2705 1.3157 33 1 2.7799 3.5331 3.3354 34 1 1.2786 1.9528 5.1317 35 1 2.9572 1.3603 5.1307 36 1 3.7636 3.6417 5.6709 37 1 2.0854 4.2348 5.6720 38 1 0.7027 2.2648 7.8968 39 1 1.5041 3.4055 9.0035 40 1 0.7723 3.9968 7.4925 41 1 2.0157 0.6586 10.1226 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690950444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:36 Heat of formation + Delta-G solvation = 32.106621 kcal Electronic energy + Delta-G solvation = -21607.350437 eV Core-core repulsion = 18330.679704 eV Total energy + Delta-G solvation = -3276.670732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.42935 -40.12463 -37.79521 -35.92540 -35.36009 -33.36465 -32.66965 -31.58075 -29.51634 -27.92283 -27.69869 -25.42845 -24.40708 -23.21199 -22.37893 -21.28335 -20.52021 -18.84244 -18.56403 -17.14705 -16.77580 -16.65733 -16.49824 -16.15083 -15.66645 -15.36503 -15.20581 -15.02308 -14.79337 -14.24362 -14.14007 -13.93727 -13.73392 -13.45873 -13.09384 -12.88634 -12.78188 -12.59705 -12.45841 -12.44086 -12.11130 -12.06630 -11.96477 -11.76774 -11.72194 -10.83912 -10.63351 -10.37135 -10.07758 -9.57390 -8.86177 -7.82970 -5.30197 0.55329 1.09925 1.47864 1.48744 1.49729 1.57981 2.30266 2.49780 2.55970 3.31783 3.35904 3.71886 3.81581 4.01607 4.21264 4.26935 4.30021 4.39510 4.43655 4.46367 4.50599 4.64758 4.69487 4.72739 4.74868 4.86674 5.02088 5.12101 5.15065 5.22951 5.28370 5.34154 5.48932 5.55910 5.66128 5.74288 5.93234 6.32227 6.52949 6.77344 7.14507 7.42453 7.86516 8.27968 9.20804 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.003391 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.942220 B = 8254.365232 C = 8696.776262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.049 4.049 3 C 0.119 3.881 4 N -0.326 5.326 5 N -0.358 5.358 6 C 0.086 3.914 7 C 0.125 3.875 8 C -0.317 4.317 9 C 0.583 3.417 10 O -0.589 6.589 11 N -0.707 5.707 12 C 0.119 3.881 13 C 0.147 3.853 14 N -0.614 5.614 15 C 0.174 3.826 16 C -0.266 4.266 17 H 0.078 0.922 18 C -0.056 4.056 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.269 1.269 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.231 0.769 33 H 0.413 0.587 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.077 0.923 38 H -0.002 1.002 39 H 0.020 0.980 40 H 0.038 0.962 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 10.709 -22.475 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.048 4.048 4 N -0.148 5.148 5 N -0.135 5.135 6 C -0.053 4.053 7 C -0.028 4.028 8 C -0.332 4.332 9 C 0.372 3.628 10 O -0.471 6.471 11 N -0.360 5.360 12 C -0.008 4.008 13 C 0.020 3.980 14 N -0.337 5.337 15 C 0.029 3.971 16 C -0.396 4.396 17 H 0.096 0.904 18 C -0.251 4.251 19 N -0.586 5.586 20 Si 0.798 3.202 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.194 1.194 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.144 0.856 32 H 0.248 0.752 33 H 0.250 0.750 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.016 0.984 39 H 0.039 0.961 40 H 0.057 0.943 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.249 10.051 -23.536 25.623 hybrid contribution 0.527 -0.513 1.781 1.927 sum 1.775 9.537 -21.755 23.820 Atomic orbital electron populations 1.21534 0.93482 1.02671 1.01072 1.20071 0.97016 0.88339 1.03431 1.22580 0.95643 0.97269 0.89337 1.77106 1.22990 0.92043 1.22631 1.48721 1.47726 1.11516 1.05522 1.22444 1.02720 0.85521 0.94584 1.23674 0.95116 0.98492 0.85505 1.20232 1.22464 0.97510 0.93033 1.17720 0.76253 0.84165 0.84640 1.90726 1.49049 1.22268 1.85040 1.45636 1.67875 1.17262 1.05180 1.21892 0.99119 0.99784 0.79995 1.21151 1.00715 0.93923 0.82214 1.44206 1.11914 1.69852 1.07743 1.20601 0.86076 0.95674 0.94774 1.19617 0.88099 1.24143 1.07782 0.90438 1.25802 0.98791 0.98392 1.02094 1.70271 1.21162 1.39597 1.27521 0.85245 0.79217 0.76767 0.78986 1.20785 1.22602 1.19361 0.92204 0.90647 0.94400 0.89450 0.90432 0.88747 0.88705 0.85570 0.75237 0.74973 0.94990 0.95387 0.91494 0.90483 0.98370 0.96129 0.94320 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.89 71.98 0.71 -2.50 16 2 C -0.05 -1.34 5.97 29.84 0.18 -1.16 16 3 C 0.12 3.31 6.52 43.51 0.28 3.59 16 4 N -0.33 -8.09 12.50 -46.67 -0.58 -8.67 16 5 N -0.36 -5.98 3.98 -367.78 -1.46 -7.44 16 6 C 0.09 0.48 11.44 127.77 1.46 1.94 16 7 C 0.13 2.06 10.99 84.28 0.93 2.98 16 8 C -0.32 -8.46 6.13 -20.15 -0.12 -8.59 16 9 C 0.58 19.63 7.81 86.67 0.68 20.31 16 10 O -0.59 -25.47 14.92 -4.04 -0.06 -25.53 16 11 N -0.71 -20.67 5.54 -466.37 -2.59 -23.26 16 12 C 0.12 4.66 6.00 86.38 0.52 5.18 16 13 C 0.15 5.42 5.82 86.38 0.50 5.92 16 14 N -0.61 -30.25 2.93 -726.94 -2.13 -32.38 16 15 C 0.17 8.56 9.02 127.77 1.15 9.71 16 16 C -0.27 -14.52 9.68 84.03 0.81 -13.71 16 17 H 0.08 4.03 7.86 -2.91 -0.02 4.01 16 18 C -0.06 -3.15 5.06 84.86 0.43 -2.73 16 19 N -0.94 -56.74 10.67 21.65 0.23 -56.51 16 20 Si 0.97 45.48 29.58 68.60 2.03 47.51 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.08 2.48 6.55 -2.39 -0.02 2.47 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.23 1.29 7.46 -2.91 -0.02 1.26 16 33 H 0.41 7.94 7.40 -92.71 -0.69 7.25 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 2.25 8.03 -2.39 -0.02 2.23 16 37 H 0.08 2.33 7.86 -2.39 -0.02 2.31 16 38 H 0.00 -0.11 7.40 -2.39 -0.02 -0.13 16 39 H 0.02 1.08 7.21 -2.38 -0.02 1.06 16 40 H 0.04 1.56 7.83 -2.38 -0.02 1.54 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -80.46 344.96 3.31 -77.15 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.34 Total: 8.18 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 7.53 Total: 20.96 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -6.53 Total: -128.26 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -80.46 3.31 -77.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690950444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.252 kcal (2) G-P(sol) polarization free energy of solvation -80.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds