Wall clock time and date at job start Tue Mar 31 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99767 * 2 1 4 4 H 1.08008 * 119.99756 * 201.96398 * 3 2 1 5 5 C 1.38806 * 120.00365 * 21.96810 * 3 2 1 6 6 N 1.31622 * 119.99662 * 11.91190 * 5 3 2 7 7 Si 1.86799 * 120.00459 * 191.91766 * 5 3 2 8 8 H 1.48499 * 109.46910 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47419 * 119.99802 * 7 5 3 10 10 H 1.48498 * 109.47148 * 239.99761 * 7 5 3 11 11 C 1.46503 * 120.00272 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47545 * 89.99555 * 11 2 1 13 13 N 1.46502 * 109.46995 * 180.02562 * 12 11 2 14 14 C 1.34783 * 119.99697 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00267 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99645 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47284 * 65.36514 * 16 14 13 18 18 C 1.53002 * 109.47369 * 305.36319 * 16 14 13 19 19 C 1.50699 * 109.47084 * 185.36003 * 16 14 13 20 20 C 1.34671 * 126.59407 * 237.09725 * 19 16 14 21 21 N 1.34128 * 108.01911 * 179.97438 * 20 19 16 22 22 C 1.30495 * 109.25763 * 359.97438 * 21 20 19 23 23 N 1.35044 * 108.70140 * 0.26860 * 22 21 20 24 24 H 0.97001 * 126.39549 * 179.73868 * 23 22 21 25 25 H 1.09000 * 109.47062 * 273.77483 * 1 2 3 26 26 H 1.08996 * 109.47237 * 33.77223 * 1 2 3 27 27 H 1.09003 * 109.47101 * 153.78105 * 1 2 3 28 28 H 0.97004 * 120.00107 * 180.02562 * 6 5 3 29 29 H 1.09000 * 109.46682 * 329.98655 * 11 2 1 30 30 H 1.09002 * 109.47030 * 209.99669 * 11 2 1 31 31 H 1.08994 * 109.47195 * 59.99914 * 12 11 2 32 32 H 1.09002 * 109.47050 * 300.00102 * 12 11 2 33 33 H 0.97001 * 120.00057 * 359.97438 * 13 12 11 34 34 H 1.08995 * 109.47053 * 180.02562 * 17 16 14 35 35 H 1.09008 * 109.46863 * 299.99781 * 17 16 14 36 36 H 1.09000 * 109.47278 * 59.99666 * 17 16 14 37 37 H 1.08997 * 109.46639 * 299.99939 * 18 16 14 38 38 H 1.08994 * 109.47050 * 59.99923 * 18 16 14 39 39 H 1.09005 * 109.47039 * 180.02562 * 18 16 14 40 40 H 1.08000 * 125.98952 * 359.96261 * 20 19 16 41 41 H 1.08002 * 125.65220 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1709 1.2199 -0.3499 5 6 1.5312 2.3444 0.4497 6 7 0.3834 2.2717 1.0897 7 14 2.3278 4.0066 0.1464 8 1 3.6042 3.8171 -0.5884 9 1 1.4131 4.8543 -0.6599 10 1 2.5996 4.6699 1.4469 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 7 3.1845 -2.9789 -1.4436 14 6 3.5218 -3.5618 -2.6111 15 8 3.2189 -3.0361 -3.6612 16 6 4.2753 -4.8669 -2.6115 17 6 3.3946 -5.9645 -2.0110 18 6 5.5488 -4.7209 -1.7762 19 6 4.6419 -5.2348 -4.0262 20 6 4.3154 -6.3716 -4.6703 21 7 4.8303 -6.3100 -5.9073 22 6 5.4630 -5.1782 -6.0543 23 7 5.3744 -4.4798 -4.9019 24 1 5.7566 -3.6054 -4.7280 25 1 -0.3633 0.0677 1.0254 26 1 -0.3633 0.8542 -0.5712 27 1 -0.3633 -0.9220 -0.4540 28 1 -0.0490 3.0813 1.4037 29 1 1.6085 -2.0285 0.5131 30 1 3.1500 -1.1385 0.5133 31 1 3.0415 -0.9501 -1.9567 32 1 1.5001 -1.8400 -1.9570 33 1 3.4271 -3.3991 -0.6037 34 1 3.9398 -6.9083 -2.0109 35 1 3.1295 -5.6984 -0.9877 36 1 2.4873 -6.0686 -2.6061 37 1 6.1762 -3.9390 -2.2040 38 1 5.2837 -4.4548 -0.7530 39 1 6.0941 -5.6648 -1.7769 40 1 3.7400 -7.1894 -4.2623 41 1 5.9767 -4.8556 -6.9479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690988299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:12 Heat of formation + Delta-G solvation = 13.746541 kcal Electronic energy + Delta-G solvation = -21980.483292 eV Core-core repulsion = 18703.016407 eV Total energy + Delta-G solvation = -3277.466885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.11978 -40.88530 -37.91169 -36.42210 -35.69984 -33.37446 -33.20096 -30.12882 -29.26313 -28.20480 -27.94182 -25.60813 -24.36896 -22.69496 -22.39003 -21.84696 -20.70922 -19.16237 -18.70683 -17.64108 -17.19673 -16.64724 -16.50533 -15.82348 -15.55246 -15.38477 -15.11696 -14.92355 -14.89329 -14.40832 -14.36365 -14.18180 -13.55269 -13.31403 -13.06847 -12.97871 -12.83033 -12.73122 -12.54284 -12.48191 -12.22694 -12.15501 -11.97976 -11.79560 -11.06179 -10.91620 -10.80953 -10.65509 -10.10063 -9.32740 -8.86227 -7.86851 -5.35912 1.09228 1.44340 1.46669 1.56113 1.57217 2.08870 2.27664 2.30269 2.51578 3.28169 3.44730 3.64706 3.82978 3.92287 3.92628 4.06545 4.21770 4.29054 4.50516 4.64375 4.65241 4.70719 4.73137 4.80475 4.86385 4.95732 5.03574 5.10417 5.16781 5.21374 5.31128 5.37686 5.46915 5.59655 5.69126 5.79111 6.29001 6.48968 6.56734 7.11093 7.12817 7.22268 7.81918 8.24200 9.17020 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.003391 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.945018 B = 8254.525965 C = 8649.474088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.617 5.617 3 C -0.266 4.266 4 H 0.072 0.928 5 C -0.052 4.052 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.268 1.268 9 H -0.293 1.293 10 H -0.289 1.289 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.704 5.704 14 C 0.512 3.488 15 O -0.585 6.585 16 C 0.004 3.996 17 C -0.138 4.138 18 C -0.139 4.139 19 C -0.002 4.002 20 C -0.038 4.038 21 N -0.533 5.533 22 C 0.183 3.817 23 N -0.552 5.552 24 H 0.424 0.576 25 H 0.009 0.991 26 H 0.016 0.984 27 H 0.028 0.972 28 H 0.249 0.751 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.416 0.584 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.181 0.819 41 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.607 -17.748 -4.800 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.341 5.341 3 C -0.396 4.396 4 H 0.090 0.910 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.192 1.192 9 H -0.220 1.220 10 H -0.215 1.215 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.356 5.356 14 C 0.299 3.701 15 O -0.465 6.465 16 C -0.001 4.001 17 C -0.195 4.195 18 C -0.197 4.197 19 C -0.120 4.120 20 C -0.186 4.186 21 N -0.253 5.253 22 C -0.101 4.101 23 N -0.153 5.153 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.253 0.747 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.198 0.802 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 11.191 -17.874 -6.058 21.942 hybrid contribution 0.204 2.288 0.644 2.385 sum 11.395 -15.587 -5.414 20.052 Atomic orbital electron populations 1.20580 0.82602 0.96004 0.97779 1.44040 1.02240 1.01632 1.86155 1.19554 0.97867 0.86617 1.35559 0.91035 1.25767 0.98394 1.01809 0.98704 1.70234 1.19281 1.27449 1.41396 0.85197 0.77995 0.80046 0.77154 1.19200 1.22024 1.21531 1.20959 0.96965 0.87561 0.92525 1.21850 0.94689 0.84089 1.00434 1.45819 1.57250 1.23570 1.08999 1.21138 0.79053 0.86596 0.83321 1.90704 1.56472 1.66302 1.33049 1.19292 0.97552 0.92739 0.90523 1.21914 0.98721 0.97357 1.01541 1.21961 0.94078 1.03787 0.99851 1.20798 1.02891 0.94445 0.93852 1.22342 1.05864 0.99331 0.91063 1.70249 1.14880 1.20792 1.19387 1.25579 1.03159 0.89352 0.91966 1.43204 1.41154 1.18736 1.12232 0.73715 0.97238 0.96521 0.95318 0.94186 0.91556 0.91997 0.94383 0.94164 0.74661 0.88429 0.89188 0.92631 0.93038 0.89192 0.89234 0.80195 0.74572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.58 8.97 127.77 1.15 9.72 16 2 N -0.62 -30.02 2.93 -726.95 -2.13 -32.15 16 3 C -0.27 -14.31 9.67 84.03 0.81 -13.50 16 4 H 0.07 3.73 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -2.86 5.12 84.86 0.43 -2.42 16 6 N -0.94 -54.77 10.60 21.65 0.23 -54.54 16 7 Si 0.97 44.66 29.57 68.60 2.03 46.69 16 8 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 C 0.15 5.30 5.76 86.38 0.50 5.80 16 12 C 0.12 3.97 6.00 86.38 0.52 4.48 16 13 N -0.70 -17.22 5.39 -463.07 -2.49 -19.71 16 14 C 0.51 13.54 6.48 87.65 0.57 14.11 16 15 O -0.59 -21.38 15.78 -3.03 -0.05 -21.43 16 16 C 0.00 0.06 0.85 -53.67 -0.05 0.02 16 17 C -0.14 -1.78 7.36 71.98 0.53 -1.25 16 18 C -0.14 -1.71 8.31 71.98 0.60 -1.12 16 19 C 0.00 -0.05 5.05 40.95 0.21 0.15 16 20 C -0.04 -0.90 10.85 83.52 0.91 0.00 16 21 N -0.53 -13.85 11.25 -200.31 -2.25 -16.10 16 22 C 0.18 3.76 13.04 180.26 2.35 6.11 16 23 N -0.55 -11.41 5.80 -186.49 -1.08 -12.49 16 24 H 0.42 7.59 8.96 -92.71 -0.83 6.76 16 25 H 0.01 0.49 7.45 -2.39 -0.02 0.47 16 26 H 0.02 0.88 7.15 -2.39 -0.02 0.86 16 27 H 0.03 1.19 8.04 -2.39 -0.02 1.17 16 28 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 30 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.42 7.00 7.38 -92.71 -0.68 6.32 16 34 H 0.10 0.86 7.86 -2.39 -0.02 0.84 16 35 H 0.09 0.83 7.95 -2.38 -0.02 0.81 16 36 H 0.05 0.89 8.06 -2.39 -0.02 0.87 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 0.79 7.28 -2.39 -0.02 0.77 16 39 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.18 3.43 7.33 -2.91 -0.02 3.41 16 41 H 0.24 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -75.51 340.45 2.30 -73.22 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.48 Total: 14.40 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 8.52 Total: 22.12 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -7.73 Total: -134.99 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -75.51 2.30 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690988299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.962 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds