Wall clock time and date at job start Tue Mar 31 2020 01:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 C 1.50694 * 109.47344 * 179.97438 * 3 2 1 5 5 C 1.35364 * 126.38750 * 275.30050 * 4 3 2 6 6 C 1.41496 * 105.50494 * 180.13454 * 5 4 3 7 7 C 1.47710 * 126.52219 * 179.83775 * 6 5 4 8 8 O 1.21578 * 119.99781 * 5.98952 * 7 6 5 9 9 N 1.34775 * 120.00367 * 185.97999 * 7 6 5 10 10 C 1.46498 * 120.00081 * 5.37943 * 9 7 6 11 11 C 1.46507 * 120.00006 * 185.10171 * 9 7 6 12 12 C 1.52996 * 109.47195 * 270.27859 * 11 9 7 13 13 N 1.46498 * 109.47265 * 179.97438 * 12 11 9 14 14 C 1.36939 * 119.99839 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00202 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99618 * 180.02562 * 14 13 12 17 17 N 1.31613 * 120.00186 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99798 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47039 * 89.99786 * 18 16 14 20 20 H 1.48498 * 109.47207 * 210.00091 * 18 16 14 21 21 H 1.48503 * 109.47132 * 330.00318 * 18 16 14 22 22 N 1.31810 * 106.96283 * 359.58747 * 6 5 4 23 23 N 1.28459 * 110.07240 * 0.25437 * 22 6 5 24 24 H 0.97003 * 124.88460 * 179.97438 * 23 22 6 25 25 H 1.09004 * 109.47300 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47655 * 300.00179 * 1 2 3 27 27 H 1.09007 * 109.47204 * 60.00191 * 1 2 3 28 28 H 1.09001 * 109.47646 * 240.00176 * 2 1 3 29 29 H 1.09001 * 109.46780 * 119.99758 * 2 1 3 30 30 H 1.09001 * 109.46701 * 59.99597 * 3 2 1 31 31 H 1.09001 * 109.47079 * 299.99575 * 3 2 1 32 32 H 1.07999 * 127.24638 * 359.97438 * 5 4 3 33 33 H 1.09004 * 109.46545 * 275.08298 * 10 9 7 34 34 H 1.08995 * 109.46987 * 35.08382 * 10 9 7 35 35 H 1.08998 * 109.47210 * 155.08818 * 10 9 7 36 36 H 1.09003 * 109.46812 * 30.27619 * 11 9 7 37 37 H 1.08993 * 109.47009 * 150.27450 * 11 9 7 38 38 H 1.09004 * 109.46936 * 300.00156 * 12 11 9 39 39 H 1.09000 * 109.47277 * 59.99504 * 12 11 9 40 40 H 0.97001 * 120.00069 * 0.02562 * 13 12 11 41 41 H 0.96999 * 120.00279 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3495 1.3421 1.0860 6 6 5.6717 1.3918 0.5847 7 6 6.9158 1.3231 1.3780 8 8 6.8637 1.1035 2.5726 9 7 8.1089 1.5036 0.7775 10 6 8.1674 1.8841 -0.6360 11 6 9.3471 1.3252 1.5399 12 6 9.7487 2.6560 2.1791 13 7 10.9866 2.4775 2.9420 14 6 11.5412 3.5394 3.6052 15 1 11.0659 4.5084 3.5663 16 6 12.7145 3.3703 4.3277 17 7 13.2940 2.1896 4.3747 18 14 13.4707 4.8187 5.2330 19 1 12.9233 4.8809 6.6121 20 1 14.9449 4.6501 5.2927 21 1 13.1450 6.0766 4.5141 22 7 5.5822 1.5057 -0.7254 23 7 4.3485 1.5366 -1.0820 24 1 4.0374 1.6165 -1.9973 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 4.0448 1.2469 2.1178 33 1 8.1069 0.9895 -1.2558 34 1 7.3325 2.5449 -0.8692 35 1 9.1063 2.4009 -0.8346 36 1 9.1894 0.5804 2.3200 37 1 10.1400 0.9892 0.8717 38 1 9.9064 3.4008 1.3990 39 1 8.9558 2.9921 2.8472 40 1 11.4137 1.6073 2.9766 41 1 14.1140 2.0715 4.8792 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691420941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:41 Heat of formation + Delta-G solvation = 22.806077 kcal Electronic energy + Delta-G solvation = -21205.577475 eV Core-core repulsion = 17928.503441 eV Total energy + Delta-G solvation = -3277.074034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.74234 -40.69473 -37.42055 -36.32173 -36.01439 -33.60334 -32.77135 -31.89951 -29.91682 -27.67013 -27.38160 -26.19848 -24.41172 -22.98564 -22.76689 -21.91097 -20.15072 -19.18990 -18.80038 -17.76610 -17.24958 -16.98125 -16.54001 -15.99727 -15.90148 -15.48064 -15.15108 -15.04998 -14.81785 -14.63152 -14.33263 -13.98673 -13.90543 -13.38572 -13.08843 -12.98516 -12.87009 -12.76241 -12.46338 -12.34903 -12.13174 -12.11186 -11.88507 -11.73671 -11.52149 -11.23684 -10.98644 -10.44262 -9.94585 -9.73119 -9.07489 -7.97930 -5.29043 0.47528 1.08416 1.45728 1.49351 1.57470 1.73947 2.11735 2.29263 2.55809 3.25213 3.34926 3.65581 3.86442 4.03372 4.06311 4.18568 4.22218 4.25694 4.38504 4.46840 4.53464 4.54603 4.70529 4.74717 4.86470 4.93431 4.97972 4.99948 5.01296 5.07234 5.23672 5.31191 5.36138 5.42360 5.48925 5.52110 6.09303 6.23335 6.32547 6.80621 7.07582 7.29381 8.00184 8.27024 9.25426 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.002719 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.699963 B =10296.620489 C =10554.931046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.046 4.046 4 C 0.041 3.959 5 C -0.202 4.202 6 C -0.032 4.032 7 C 0.587 3.413 8 O -0.575 6.575 9 N -0.599 5.599 10 C 0.085 3.915 11 C 0.123 3.877 12 C 0.149 3.851 13 N -0.742 5.742 14 C -0.252 4.252 15 H 0.073 0.927 16 C -0.075 4.075 17 N -0.967 5.967 18 Si 0.980 3.020 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.268 1.268 22 N -0.252 5.252 23 N -0.362 5.362 24 H 0.462 0.538 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.155 0.845 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.029 0.971 39 H 0.000 1.000 40 H 0.376 0.624 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.193 -2.783 -18.007 32.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.086 4.086 5 C -0.230 4.230 6 C -0.191 4.191 7 C 0.375 3.625 8 O -0.453 6.453 9 N -0.330 5.330 10 C -0.057 4.057 11 C 0.000 4.000 12 C 0.021 3.979 13 N -0.385 5.385 14 C -0.384 4.384 15 H 0.090 0.910 16 C -0.267 4.267 17 N -0.617 5.617 18 Si 0.808 3.192 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.193 1.193 22 N -0.090 5.090 23 N -0.079 5.079 24 H 0.311 0.689 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.172 0.828 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.047 0.953 39 H 0.018 0.982 40 H 0.209 0.791 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -26.515 -2.640 -18.290 32.319 hybrid contribution 0.408 0.192 1.176 1.260 sum -26.107 -2.448 -17.114 31.312 Atomic orbital electron populations 1.21762 0.94239 1.02203 1.02651 1.21517 0.96787 0.95197 1.02305 1.20376 0.83543 0.98742 1.05855 1.21727 0.96262 1.04455 0.86111 1.21647 0.90339 1.10169 1.00872 1.21572 0.94435 1.12279 0.90777 1.17527 0.82789 0.76387 0.85814 1.90790 1.87046 1.51456 1.16030 1.47734 1.04666 1.67570 1.13042 1.22117 1.03820 1.01612 0.78102 1.21436 0.85562 0.96960 0.96059 1.20939 0.87438 0.96174 0.93328 1.42377 1.26084 1.10371 1.59711 1.19596 1.04637 0.90855 1.23262 0.90953 1.25659 0.98875 0.99863 1.02292 1.69818 1.21151 1.23596 1.47180 0.85050 0.77087 0.78716 0.78330 1.21432 1.21535 1.19294 1.73690 1.02454 1.19191 1.13661 1.43512 1.02243 1.51273 1.10855 0.68892 0.92597 0.92269 0.91484 0.91743 0.92694 0.88368 0.87672 0.82776 0.90850 0.89470 0.90187 0.91787 0.88089 0.95268 0.98159 0.79138 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 71.98 0.71 -0.15 16 2 C -0.12 -0.94 5.92 30.59 0.18 -0.76 16 3 C -0.05 -0.33 5.77 29.85 0.17 -0.16 16 4 C 0.04 0.61 6.48 41.40 0.27 0.88 16 5 C -0.20 -4.80 10.73 22.41 0.24 -4.56 16 6 C -0.03 -0.90 6.75 42.45 0.29 -0.62 16 7 C 0.59 21.36 7.67 86.75 0.67 22.03 16 8 O -0.58 -25.86 16.57 -3.96 -0.07 -25.92 16 9 N -0.60 -19.79 2.87 -850.34 -2.44 -22.23 16 10 C 0.09 2.04 9.32 127.77 1.19 3.23 16 11 C 0.12 4.69 5.45 86.38 0.47 5.16 16 12 C 0.15 6.86 6.58 86.38 0.57 7.42 16 13 N -0.74 -41.17 5.60 -343.45 -1.92 -43.09 16 14 C -0.25 -15.08 9.99 84.03 0.84 -14.24 16 15 H 0.07 4.20 7.83 -2.91 -0.02 4.17 16 16 C -0.07 -4.48 5.50 84.86 0.47 -4.01 16 17 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 18 Si 0.98 47.94 29.55 68.60 2.03 49.96 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 N -0.25 -5.39 9.01 -48.18 -0.43 -5.83 16 23 N -0.36 -4.83 6.83 -47.93 -0.33 -5.16 16 24 H 0.46 2.10 8.96 -219.99 -1.97 0.13 16 25 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 26 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.07 0.24 8.14 -2.38 -0.02 0.22 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.20 8.14 -2.39 -0.02 0.19 16 32 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.09 1.98 5.94 -2.39 -0.01 1.96 16 35 H 0.08 1.78 8.03 -2.39 -0.02 1.76 16 36 H 0.06 2.71 7.51 -2.39 -0.02 2.69 16 37 H 0.10 3.39 8.07 -2.39 -0.02 3.37 16 38 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.38 21.67 7.67 -92.71 -0.71 20.96 16 41 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -79.68 346.68 1.53 -78.15 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -1.64 Total: 20.92 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.06 Total: 14.21 kcal Atomic # 7 Polarization: -132.47 SS G_CDS: -4.85 Total: -137.32 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.07 Total: -25.92 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.96 kcal Total: -79.68 1.53 -78.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691420941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.951 kcal (2) G-P(sol) polarization free energy of solvation -79.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds