Wall clock time and date at job start Tue Mar 31 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47118 * 2 1 4 4 C 1.35360 * 126.38832 * 85.00024 * 3 2 1 5 5 C 1.41502 * 105.50697 * 180.02562 * 4 3 2 6 6 C 1.47715 * 126.51955 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99599 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99965 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99910 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47297 * 34.99871 * 9 8 6 11 11 C 1.53006 * 109.46998 * 275.00232 * 9 8 6 12 12 C 1.52997 * 109.47007 * 155.00372 * 9 8 6 13 13 C 1.53001 * 109.46997 * 294.99685 * 12 9 8 14 14 N 1.46504 * 109.46748 * 179.97438 * 13 12 9 15 15 C 1.36936 * 119.99458 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00538 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99842 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99971 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99800 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47468 * 90.00169 * 19 17 15 21 21 H 1.48500 * 109.47220 * 210.00168 * 19 17 15 22 22 H 1.48503 * 109.47284 * 330.00241 * 19 17 15 23 23 N 1.31805 * 106.96055 * 0.24438 * 5 4 3 24 24 N 1.28466 * 110.07761 * 359.58851 * 23 5 4 25 25 H 0.96998 * 124.88740 * 180.20677 * 24 23 5 26 26 H 1.08993 * 109.47168 * 300.00058 * 1 2 3 27 27 H 1.09000 * 109.46959 * 60.00117 * 1 2 3 28 28 H 1.09001 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.47094 * 240.00032 * 2 1 3 30 30 H 1.09004 * 109.47340 * 120.00197 * 2 1 3 31 31 H 1.08006 * 127.24728 * 0.02562 * 4 3 2 32 32 H 0.96995 * 119.99797 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47002 * 179.97438 * 11 9 8 34 34 H 1.08993 * 109.46955 * 300.00226 * 11 9 8 35 35 H 1.09000 * 109.47050 * 60.00054 * 11 9 8 36 36 H 1.08993 * 109.47322 * 54.99986 * 12 9 8 37 37 H 1.09002 * 109.47196 * 175.00109 * 12 9 8 38 38 H 1.08993 * 109.47331 * 300.00296 * 13 12 9 39 39 H 1.09001 * 109.46791 * 60.00740 * 13 12 9 40 40 H 0.96992 * 120.00104 * 0.02562 * 14 13 12 41 41 H 0.96993 * 119.99905 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2105 2.2095 1.0855 5 6 2.6920 3.4415 0.5830 6 6 3.0407 4.6382 1.3758 7 8 2.9228 4.6213 2.5857 8 7 3.4895 5.7486 0.7578 9 6 3.8348 6.9356 1.5440 10 1 4.2651 6.6277 2.4969 11 6 2.5736 7.7639 1.7977 12 6 4.8525 7.7792 0.7736 13 6 6.1587 6.9958 0.6285 14 7 7.1330 7.8034 -0.1097 15 6 8.3832 7.3054 -0.3632 16 1 8.6511 6.3175 -0.0186 17 6 9.3066 8.0708 -1.0622 18 7 10.5080 7.5920 -1.3063 19 14 8.8434 9.7796 -1.6576 20 1 9.1813 10.7771 -0.6107 21 1 9.5952 10.0917 -2.8997 22 1 7.3855 9.8287 -1.9359 23 7 2.7647 3.3203 -0.7274 24 7 2.3881 2.1446 -1.0831 25 1 2.3601 1.8242 -1.9982 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 2.0242 1.9526 2.1179 32 1 3.5832 5.7621 -0.2075 33 1 2.8304 8.6468 2.3830 34 1 2.1433 8.0717 0.8448 35 1 1.8486 7.1628 2.3465 36 1 4.4571 8.0126 -0.2149 37 1 5.0426 8.7049 1.3167 38 1 6.5542 6.7624 1.6170 39 1 5.9687 6.0701 0.0852 40 1 6.8925 8.6907 -0.4189 41 1 11.1530 8.1266 -1.7950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699082729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:52 Heat of formation + Delta-G solvation = 5.520994 kcal Electronic energy + Delta-G solvation = -21306.226840 eV Core-core repulsion = 18028.403269 eV Total energy + Delta-G solvation = -3277.823572 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.71071 -40.67287 -37.93958 -36.21212 -35.23182 -33.81836 -33.13434 -32.01212 -30.23168 -29.71953 -25.95794 -25.23599 -24.62018 -23.13264 -22.06069 -21.91947 -21.16222 -19.70256 -18.67357 -17.95827 -17.29107 -16.82967 -16.59094 -15.98922 -15.53549 -15.42101 -15.29955 -15.14922 -14.84171 -14.67881 -14.33385 -14.19672 -13.88668 -13.37380 -13.28171 -12.98162 -12.94604 -12.50639 -12.41971 -12.19872 -12.09391 -12.01309 -11.86192 -11.75809 -11.71703 -11.23733 -10.99407 -10.50588 -10.07370 -9.97336 -9.32982 -8.04678 -5.39598 0.49516 1.10110 1.37905 1.43125 1.50428 1.86251 2.24642 2.35499 2.48148 3.26298 3.35890 3.45399 3.67645 3.98810 4.00914 4.09517 4.23804 4.35697 4.42179 4.52715 4.53813 4.60507 4.70539 4.74592 4.81012 4.85776 4.99534 5.08316 5.17916 5.20213 5.23676 5.29957 5.32549 5.40333 5.52802 5.72192 6.08630 6.18981 6.44735 6.85310 7.05716 7.15005 7.80026 8.02507 9.17158 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020432 B = 0.003395 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.095896 B = 8246.143497 C = 9126.824513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.036 3.964 4 C -0.201 4.201 5 C -0.037 4.037 6 C 0.600 3.400 7 O -0.570 6.570 8 N -0.702 5.702 9 C 0.147 3.853 10 H 0.074 0.926 11 C -0.152 4.152 12 C -0.122 4.122 13 C 0.155 3.845 14 N -0.757 5.757 15 C -0.242 4.242 16 H 0.048 0.952 17 C -0.067 4.067 18 N -0.986 5.986 19 Si 0.964 3.036 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.246 1.246 23 N -0.271 5.271 24 N -0.365 5.365 25 H 0.460 0.540 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.163 0.837 32 H 0.411 0.589 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.013 0.987 39 H 0.019 0.981 40 H 0.369 0.631 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.815 -11.817 0.528 28.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.091 4.091 4 C -0.229 4.229 5 C -0.197 4.197 6 C 0.386 3.614 7 O -0.447 6.447 8 N -0.353 5.353 9 C 0.043 3.957 10 H 0.092 0.908 11 C -0.210 4.210 12 C -0.160 4.160 13 C 0.029 3.971 14 N -0.403 5.403 15 C -0.373 4.373 16 H 0.066 0.934 17 C -0.258 4.258 18 N -0.636 5.636 19 Si 0.790 3.210 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.170 1.170 23 N -0.108 5.108 24 N -0.082 5.082 25 H 0.308 0.692 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.180 0.820 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.203 0.797 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -25.435 -11.341 0.483 27.853 hybrid contribution 0.450 0.254 -0.519 0.732 sum -24.986 -11.088 -0.037 27.335 Atomic orbital electron populations 1.21771 0.93403 1.03253 1.02092 1.20303 0.96740 0.86295 1.05752 1.21908 1.03116 0.97882 0.86193 1.21689 1.08025 0.92336 1.00849 1.21888 1.09983 0.97262 0.90549 1.17156 0.76423 0.81747 0.86121 1.90744 1.55772 1.83765 1.14464 1.45979 1.65127 1.12576 1.11618 1.20976 0.95557 0.84418 0.94787 0.90779 1.22085 0.96210 0.99957 1.02739 1.21979 0.92954 0.99115 1.02002 1.20742 0.88780 0.93767 0.93837 1.42660 1.11580 1.17945 1.68085 1.19019 0.89443 0.99934 1.28872 0.93415 1.25631 0.95584 1.03342 1.01248 1.69906 1.06655 1.39726 1.47327 0.85280 0.78912 0.79331 0.77468 1.20189 1.22142 1.16972 1.73503 1.18547 1.04170 1.14585 1.43422 1.46115 1.07637 1.10988 0.69197 0.92974 0.92760 0.89963 0.88184 0.88074 0.81985 0.75256 0.89724 0.91155 0.93213 0.89769 0.88557 0.96860 0.96329 0.79695 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.05 -0.40 6.49 29.85 0.19 -0.21 16 3 C 0.04 0.57 6.48 41.40 0.27 0.84 16 4 C -0.20 -4.61 10.73 22.41 0.24 -4.37 16 5 C -0.04 -1.03 7.13 42.46 0.30 -0.73 16 6 C 0.60 18.91 7.79 86.75 0.68 19.59 16 7 O -0.57 -20.95 16.59 -3.95 -0.07 -21.02 16 8 N -0.70 -19.68 4.53 -445.52 -2.02 -21.70 16 9 C 0.15 3.94 2.57 44.99 0.12 4.05 16 10 H 0.07 2.27 7.58 -2.39 -0.02 2.26 16 11 C -0.15 -3.25 9.48 71.98 0.68 -2.57 16 12 C -0.12 -3.45 4.87 30.59 0.15 -3.30 16 13 C 0.15 6.16 6.15 86.38 0.53 6.69 16 14 N -0.76 -36.37 5.41 -343.44 -1.86 -38.23 16 15 C -0.24 -14.40 10.47 84.04 0.88 -13.52 16 16 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 17 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 18 N -0.99 -64.69 13.97 21.65 0.30 -64.39 16 19 Si 0.96 45.66 27.73 68.60 1.90 47.56 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.25 -10.25 6.52 99.48 0.65 -9.61 16 23 N -0.27 -6.60 11.92 -48.17 -0.57 -7.18 16 24 N -0.36 -6.01 6.83 -47.93 -0.33 -6.34 16 25 H 0.46 4.00 8.96 -220.00 -1.97 2.02 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.66 16 31 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.41 10.82 8.33 -92.71 -0.77 10.05 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.02 0.78 7.75 -2.39 -0.02 0.76 16 40 H 0.37 16.36 5.53 -92.71 -0.51 15.85 16 41 H 0.26 16.07 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -79.86 347.41 0.32 -79.54 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -2.26 Total: 29.13 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.22 Total: 2.61 kcal Atomic # 7 Polarization: -133.36 SS G_CDS: -4.47 Total: -137.83 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.07 Total: -21.02 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -79.86 0.32 -79.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699082729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.062 kcal (2) G-P(sol) polarization free energy of solvation -79.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds