Wall clock time and date at job start Tue Mar 31 2020 01:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35355 * 126.38656 * 85.00087 * 3 2 1 5 5 C 1.41504 * 105.50623 * 179.97438 * 4 3 2 6 6 C 1.47711 * 126.52115 * 179.97438 * 5 4 3 7 7 O 1.21570 * 119.99983 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00201 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46968 * 324.99804 * 9 8 6 11 11 C 1.52997 * 109.47171 * 84.99791 * 9 8 6 12 12 C 1.52998 * 109.47413 * 205.00103 * 9 8 6 13 13 C 1.53006 * 109.46914 * 64.99639 * 12 9 8 14 14 N 1.46502 * 109.46652 * 180.02562 * 13 12 9 15 15 C 1.36940 * 119.99771 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99898 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00032 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99919 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99917 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47209 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46942 * 120.00472 * 19 17 15 22 22 H 1.48505 * 109.47176 * 240.00320 * 19 17 15 23 23 N 1.31805 * 106.95993 * 0.02562 * 5 4 3 24 24 N 1.28466 * 110.07421 * 359.71458 * 23 5 4 25 25 H 0.97006 * 124.88697 * 180.29431 * 24 23 5 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08007 * 127.25352 * 359.97438 * 4 3 2 32 32 H 0.97002 * 119.99782 * 0.02562 * 8 6 5 33 33 H 1.08995 * 109.47131 * 60.00470 * 11 9 8 34 34 H 1.09001 * 109.47098 * 180.02562 * 11 9 8 35 35 H 1.08998 * 109.47339 * 300.00319 * 11 9 8 36 36 H 1.09003 * 109.47070 * 184.99510 * 12 9 8 37 37 H 1.09002 * 109.47038 * 304.99901 * 12 9 8 38 38 H 1.08996 * 109.47493 * 300.00012 * 13 12 9 39 39 H 1.09002 * 109.47053 * 60.00272 * 13 12 9 40 40 H 0.96992 * 120.00411 * 0.02562 * 14 13 12 41 41 H 0.97001 * 119.99906 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2104 2.2096 1.0855 5 6 2.6931 3.4412 0.5831 6 6 3.0422 4.6377 1.3759 7 8 2.9237 4.6211 2.5857 8 7 3.4921 5.7477 0.7580 9 6 3.8389 6.9343 1.5442 10 1 3.1618 7.0173 2.3944 11 6 5.2779 6.8091 2.0486 12 6 3.7123 8.1819 0.6677 13 6 2.2489 8.3762 0.2655 14 7 2.1278 9.5705 -0.5742 15 6 0.9027 9.9470 -1.0566 16 1 0.0258 9.3637 -0.8176 17 6 0.7879 11.0789 -1.8519 18 7 1.8565 11.7900 -2.1427 19 14 -0.8832 11.5921 -2.5105 20 1 -1.9154 10.6322 -2.0433 21 1 -1.2133 12.9529 -2.0162 22 1 -0.8492 11.5994 -3.9951 23 7 2.7708 3.3182 -0.7269 24 7 2.3939 2.1426 -1.0824 25 1 2.3703 1.8206 -1.9972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0235 1.9530 2.1179 32 1 3.5862 5.7611 -0.2074 33 1 5.9549 6.7261 1.1985 34 1 5.5357 7.6917 2.6340 35 1 5.3681 5.9203 2.6730 36 1 4.0548 9.0538 1.2251 37 1 4.3221 8.0603 -0.2276 38 1 1.9063 7.5044 -0.2918 39 1 1.6391 8.4978 1.1608 40 1 2.9153 10.0946 -0.7886 41 1 1.7762 12.5812 -2.6982 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699082730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:55 Heat of formation + Delta-G solvation = 2.731229 kcal Electronic energy + Delta-G solvation = -21285.233068 eV Core-core repulsion = 18007.288523 eV Total energy + Delta-G solvation = -3277.944545 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.70776 -40.66700 -37.85904 -36.11879 -35.22785 -33.69983 -33.01823 -31.86373 -30.21115 -29.42038 -26.04824 -25.35211 -24.62568 -23.21114 -22.05381 -21.85667 -21.14655 -19.22387 -18.66727 -17.93290 -17.24114 -16.85075 -16.68397 -15.75620 -15.53374 -15.39305 -15.25955 -15.13255 -14.93225 -14.71110 -14.31638 -14.17957 -13.60857 -13.31581 -13.11632 -12.91910 -12.90365 -12.51107 -12.40026 -12.24378 -12.09145 -12.01492 -11.95144 -11.72536 -11.64774 -11.23117 -10.97388 -10.50138 -10.06880 -9.97055 -9.02932 -7.97914 -5.27136 0.49893 1.10584 1.45463 1.46561 1.56894 1.86712 2.24931 2.35795 2.53741 3.35465 3.37301 3.62222 3.68399 4.00576 4.05454 4.15331 4.30894 4.41370 4.42240 4.53057 4.55691 4.63898 4.70411 4.75921 4.81226 4.86056 4.99296 5.07548 5.19643 5.20807 5.26149 5.30418 5.32764 5.40511 5.46215 5.53211 6.09360 6.24887 6.45275 6.85787 7.15068 7.31172 8.05654 8.31000 9.25679 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.003593 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.070443 B = 7790.594200 C = 9130.830835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.036 3.964 4 C -0.200 4.200 5 C -0.037 4.037 6 C 0.600 3.400 7 O -0.570 6.570 8 N -0.701 5.701 9 C 0.150 3.850 10 H 0.075 0.925 11 C -0.152 4.152 12 C -0.118 4.118 13 C 0.154 3.846 14 N -0.745 5.745 15 C -0.249 4.249 16 H 0.069 0.931 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.290 1.290 22 H -0.289 1.289 23 N -0.272 5.272 24 N -0.364 5.364 25 H 0.460 0.540 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.163 0.837 32 H 0.411 0.589 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.016 0.984 39 H 0.009 0.991 40 H 0.376 0.624 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 -26.415 3.437 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.088 4.088 3 C -0.091 4.091 4 C -0.228 4.228 5 C -0.196 4.196 6 C 0.386 3.614 7 O -0.448 6.448 8 N -0.352 5.352 9 C 0.045 3.955 10 H 0.093 0.907 11 C -0.210 4.210 12 C -0.156 4.156 13 C 0.028 3.972 14 N -0.388 5.388 15 C -0.381 4.381 16 H 0.087 0.913 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.803 3.197 20 H -0.194 1.194 21 H -0.217 1.217 22 H -0.216 1.216 23 N -0.109 5.109 24 N -0.081 5.081 25 H 0.308 0.692 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.181 0.819 32 H 0.247 0.753 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.208 0.792 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.640 -25.805 3.365 26.276 hybrid contribution -0.794 0.431 -0.655 1.116 sum 2.846 -25.373 2.710 25.676 Atomic orbital electron populations 1.21793 0.93888 1.03231 1.01920 1.20294 0.96331 0.86272 1.05944 1.21918 1.03063 0.97975 0.86148 1.21690 1.07992 0.92244 1.00897 1.21869 1.10134 0.97106 0.90517 1.17168 0.76195 0.81918 0.86162 1.90740 1.55935 1.83588 1.14497 1.45982 1.65233 1.12429 1.11568 1.20946 0.97702 0.83036 0.93821 0.90720 1.22083 0.94437 1.02767 1.01738 1.21901 0.96056 0.97349 1.00301 1.20746 0.95561 0.88484 0.92455 1.42549 1.06964 1.29384 1.59874 1.19634 0.87733 1.06891 1.23866 0.91264 1.25568 1.00898 0.98355 1.01712 1.69812 1.29258 1.19345 1.43341 0.85069 0.79446 0.77669 0.77545 1.19421 1.21715 1.21605 1.73517 1.18924 1.03917 1.14527 1.43425 1.46080 1.07595 1.11028 0.69189 0.89827 0.93207 0.93094 0.87738 0.87941 0.81942 0.75325 0.91333 0.89950 0.92956 0.89482 0.90521 0.96566 0.97261 0.79162 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 71.98 0.71 -0.52 16 2 C -0.05 -0.36 6.49 29.85 0.19 -0.17 16 3 C 0.04 0.56 6.48 41.40 0.27 0.83 16 4 C -0.20 -4.57 10.73 22.41 0.24 -4.33 16 5 C -0.04 -1.03 7.13 42.46 0.30 -0.72 16 6 C 0.60 19.32 7.79 86.75 0.68 19.99 16 7 O -0.57 -21.26 16.59 -3.94 -0.07 -21.32 16 8 N -0.70 -20.69 4.53 -445.54 -2.02 -22.71 16 9 C 0.15 4.34 2.57 44.99 0.12 4.46 16 10 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 11 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 12 C -0.12 -3.79 4.87 30.60 0.15 -3.64 16 13 C 0.15 6.52 6.15 86.38 0.53 7.05 16 14 N -0.74 -39.31 5.60 -343.43 -1.92 -41.24 16 15 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 16 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 17 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 18 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 19 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 N -0.27 -6.69 11.92 -48.18 -0.57 -7.27 16 24 N -0.36 -5.99 6.83 -47.93 -0.33 -6.31 16 25 H 0.46 3.95 8.96 -219.99 -1.97 1.97 16 26 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.41 11.54 8.33 -92.71 -0.77 10.77 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.02 0.71 7.75 -2.39 -0.02 0.69 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.38 20.64 7.67 -92.71 -0.71 19.93 16 41 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -75.46 350.53 0.18 -75.28 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -2.40 Total: 31.58 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.18 Total: 2.48 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -4.56 Total: -137.14 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.07 Total: -21.32 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -75.46 0.18 -75.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699082730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.012 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds