Wall clock time and date at job start Tue Mar 31 2020 01:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46654 * 2 1 4 4 C 1.35359 * 126.38659 * 85.00470 * 3 2 1 5 5 C 1.41498 * 105.50574 * 179.97438 * 4 3 2 6 6 C 1.47713 * 126.52079 * 179.97438 * 5 4 3 7 7 O 1.21571 * 120.00048 * 353.45761 * 6 5 4 8 8 N 1.34781 * 120.00026 * 173.45275 * 6 5 4 9 9 C 1.46497 * 119.99782 * 3.52765 * 8 6 5 10 10 C 1.46495 * 120.00060 * 183.52090 * 8 6 5 11 11 C 1.52997 * 109.46982 * 90.00352 * 10 8 6 12 12 C 1.53005 * 109.47246 * 180.02562 * 11 10 8 13 13 N 1.46495 * 109.47446 * 179.97438 * 12 11 10 14 14 C 1.36938 * 119.99990 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99998 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99543 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00440 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99594 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47140 * 60.00442 * 18 16 14 20 20 H 1.48506 * 109.46995 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47503 * 300.00076 * 18 16 14 22 22 N 1.31813 * 106.96395 * 0.02562 * 5 4 3 23 23 N 1.28466 * 110.06958 * 359.71904 * 22 5 4 24 24 H 0.97001 * 124.88207 * 180.29712 * 23 22 5 25 25 H 1.08999 * 109.46877 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47074 * 299.99890 * 1 2 3 27 27 H 1.08999 * 109.47435 * 59.99865 * 1 2 3 28 28 H 1.08999 * 109.47435 * 120.00135 * 2 1 3 29 29 H 1.09002 * 109.47074 * 240.00110 * 2 1 3 30 30 H 1.08002 * 127.25023 * 359.97438 * 4 3 2 31 31 H 1.08994 * 109.47702 * 84.08242 * 9 8 6 32 32 H 1.09008 * 109.46890 * 204.08087 * 9 8 6 33 33 H 1.08998 * 109.47602 * 324.07550 * 9 8 6 34 34 H 1.08997 * 109.47264 * 210.00387 * 10 8 6 35 35 H 1.09008 * 109.47172 * 330.00511 * 10 8 6 36 36 H 1.09005 * 109.47367 * 299.99860 * 11 10 8 37 37 H 1.08995 * 109.47354 * 60.00177 * 11 10 8 38 38 H 1.08997 * 109.47088 * 300.00089 * 12 11 10 39 39 H 1.09003 * 109.47004 * 59.99556 * 12 11 10 40 40 H 0.97007 * 119.99494 * 0.02562 * 13 12 11 41 41 H 0.97003 * 120.00446 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2103 2.2096 1.0855 5 6 2.6929 3.4412 0.5832 6 6 3.0420 4.6377 1.3759 7 8 2.8122 4.6645 2.5694 8 7 3.6154 5.6998 0.7761 9 6 3.8219 5.6987 -0.6742 10 6 4.0321 6.8553 1.5745 11 6 5.4771 6.6605 2.0379 12 6 5.9121 7.8670 2.8723 13 7 7.2955 7.6804 3.3166 14 6 7.9039 8.6387 4.0826 15 1 7.3637 9.5319 4.3595 16 6 9.2149 8.4619 4.5031 17 7 9.8734 7.3735 4.1652 18 14 10.0446 9.7688 5.5486 19 1 9.2840 9.9490 6.8113 20 1 11.4325 9.3441 5.8625 21 1 10.0770 11.0525 4.8028 22 7 2.7706 3.3183 -0.7269 23 7 2.3937 2.1428 -1.0825 24 1 2.3700 1.8208 -1.9972 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0235 1.9529 2.1178 31 1 2.9086 6.0251 -1.1716 32 1 4.6356 6.3791 -0.9259 33 1 4.0753 4.6914 -1.0045 34 1 3.9634 7.7590 0.9690 35 1 3.3813 6.9500 2.4438 36 1 5.5458 5.7568 2.6435 37 1 6.1278 6.5659 1.1687 38 1 5.8433 8.7710 2.2673 39 1 5.2612 7.9613 3.7416 40 1 7.7808 6.8782 3.0676 41 1 10.7897 7.2502 4.4588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699491139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:09 Heat of formation + Delta-G solvation = 49.078827 kcal Electronic energy + Delta-G solvation = -21173.672910 eV Core-core repulsion = 17897.738148 eV Total energy + Delta-G solvation = -3275.934762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.94780 -39.49170 -36.06300 -34.89890 -34.53763 -32.48867 -31.76187 -29.97677 -29.35545 -26.78515 -25.76956 -24.17513 -23.64862 -22.12208 -21.32073 -20.79939 -18.95639 -18.06144 -16.97329 -16.78749 -16.09065 -15.96163 -14.98000 -14.79635 -14.57617 -14.42339 -14.12490 -13.75131 -13.51043 -13.21718 -12.97601 -12.89250 -12.80245 -12.53272 -12.05646 -11.84303 -11.80318 -11.58308 -10.85665 -10.77878 -10.76344 -10.64769 -10.29528 -10.08572 -9.92899 -9.63996 -9.58477 -9.22092 -8.78593 -8.52361 -6.83399 -5.68213 -2.96667 1.42011 1.88335 2.54618 3.08096 3.40748 3.50096 3.53580 3.55291 4.12920 4.27620 4.46173 4.66937 4.77837 4.89988 5.07374 5.20682 5.27270 5.36678 5.39796 5.42710 5.44353 5.63828 5.65221 5.67935 5.73310 5.80539 5.88197 6.02958 6.17689 6.20448 6.39538 6.48890 6.62358 6.76123 6.96590 6.98648 7.40522 7.63248 7.77036 8.23826 8.50865 9.61375 10.20841 10.55544 11.54941 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034400 B = 0.002678 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.759438 B =10451.313008 C =10686.195653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C 0.016 3.984 4 C -0.175 4.175 5 C -0.002 4.002 6 C 0.596 3.404 7 O -0.528 6.528 8 N -0.602 5.602 9 C 0.075 3.925 10 C 0.119 3.881 11 C -0.139 4.139 12 C 0.156 3.844 13 N -0.734 5.734 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.017 4.017 17 N -0.935 5.935 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 N -0.257 5.257 23 N -0.385 5.385 24 H 0.442 0.558 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.018 0.982 39 H 0.021 0.979 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.025 -15.051 -15.381 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.110 4.110 4 C -0.203 4.203 5 C -0.162 4.162 6 C 0.382 3.618 7 O -0.403 6.403 8 N -0.334 5.334 9 C -0.068 4.068 10 C -0.004 4.004 11 C -0.178 4.178 12 C 0.028 3.972 13 N -0.378 5.378 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.212 4.212 17 N -0.584 5.584 18 Si 0.740 3.260 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 N -0.093 5.093 23 N -0.099 5.099 24 H 0.286 0.714 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.180 0.820 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.812 -14.249 -15.553 28.939 hybrid contribution 0.572 -0.143 0.537 0.798 sum -19.240 -14.392 -15.016 28.334 Atomic orbital electron populations 1.21784 0.93992 1.02279 1.02681 1.20127 0.96450 0.88696 1.04072 1.21439 1.05305 0.96881 0.87366 1.21516 1.06522 0.92331 0.99881 1.21980 1.07514 0.96940 0.89809 1.16992 0.77658 0.81102 0.86032 1.90814 1.54328 1.80947 1.14161 1.47729 1.59551 1.17387 1.08722 1.22100 1.01170 1.04393 0.79146 1.21548 0.96428 0.86451 0.95943 1.22068 0.94742 1.00580 1.00423 1.20545 0.87668 0.94008 0.94949 1.42356 1.09210 1.23805 1.62398 1.19215 0.95049 0.98873 1.23733 0.91180 1.24757 0.97065 0.97863 1.01565 1.69659 1.11258 1.26973 1.50546 0.86240 0.78544 0.80937 0.80310 1.21252 1.21726 1.21307 1.73752 1.18333 1.02113 1.15072 1.43452 1.47665 1.08944 1.09835 0.71361 0.91716 0.91792 0.92741 0.88930 0.90648 0.82034 0.92822 0.91140 0.88976 0.90297 0.89540 0.91568 0.91955 0.96372 0.96122 0.78321 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.16 0.37 -0.27 16 2 C -0.05 -0.25 6.49 -27.88 -0.18 -0.43 16 3 C 0.02 0.13 6.48 -82.21 -0.53 -0.41 16 4 C -0.17 -1.98 10.73 -39.37 -0.42 -2.40 16 5 C 0.00 -0.02 6.82 -82.76 -0.56 -0.59 16 6 C 0.60 9.56 7.68 -12.39 -0.10 9.47 16 7 O -0.53 -10.16 16.49 5.30 0.09 -10.07 16 8 N -0.60 -8.65 2.87 -182.75 -0.53 -9.18 16 9 C 0.08 0.84 9.63 59.85 0.58 1.42 16 10 C 0.12 1.79 5.41 -4.05 -0.02 1.77 16 11 C -0.14 -2.54 5.65 -26.73 -0.15 -2.69 16 12 C 0.16 3.39 6.26 -4.04 -0.03 3.37 16 13 N -0.73 -19.98 5.60 -59.91 -0.34 -20.32 16 14 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 15 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 17 N -0.94 -29.52 13.06 55.49 0.72 -28.79 16 18 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 N -0.26 -2.79 8.76 33.42 0.29 -2.49 16 23 N -0.39 -2.93 6.83 33.50 0.23 -2.70 16 24 H 0.44 1.67 8.96 -190.44 -1.71 -0.04 16 25 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.73 8.03 -51.92 -0.42 0.31 16 33 H 0.09 1.03 5.36 -51.93 -0.28 0.76 16 34 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.09 1.39 7.38 -51.92 -0.38 1.01 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.38 10.97 7.67 -40.82 -0.31 10.65 16 41 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -36.31 346.10 -8.35 -44.65 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.71 Total: 4.03 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.30 Total: 1.47 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 0.39 Total: -63.49 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.31 -8.35 -44.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699491139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.729 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds