Wall clock time and date at job start Tue Mar 31 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46654 * 2 1 4 4 C 1.35359 * 126.38659 * 85.00470 * 3 2 1 5 5 C 1.41498 * 105.50574 * 179.97438 * 4 3 2 6 6 C 1.47713 * 126.52079 * 179.97438 * 5 4 3 7 7 O 1.21571 * 120.00048 * 353.45761 * 6 5 4 8 8 N 1.34781 * 120.00026 * 173.45275 * 6 5 4 9 9 C 1.46497 * 119.99782 * 3.52765 * 8 6 5 10 10 C 1.46495 * 120.00060 * 183.52090 * 8 6 5 11 11 C 1.52997 * 109.46982 * 90.00352 * 10 8 6 12 12 C 1.53005 * 109.47246 * 180.02562 * 11 10 8 13 13 N 1.46495 * 109.47446 * 179.97438 * 12 11 10 14 14 C 1.36938 * 119.99990 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99998 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99543 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00440 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99594 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47140 * 60.00442 * 18 16 14 20 20 H 1.48506 * 109.46995 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47503 * 300.00076 * 18 16 14 22 22 N 1.31813 * 106.96395 * 0.02562 * 5 4 3 23 23 N 1.28466 * 110.06958 * 359.71904 * 22 5 4 24 24 H 0.97001 * 124.88207 * 180.29712 * 23 22 5 25 25 H 1.08999 * 109.46877 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47074 * 299.99890 * 1 2 3 27 27 H 1.08999 * 109.47435 * 59.99865 * 1 2 3 28 28 H 1.08999 * 109.47435 * 120.00135 * 2 1 3 29 29 H 1.09002 * 109.47074 * 240.00110 * 2 1 3 30 30 H 1.08002 * 127.25023 * 359.97438 * 4 3 2 31 31 H 1.08994 * 109.47702 * 84.08242 * 9 8 6 32 32 H 1.09008 * 109.46890 * 204.08087 * 9 8 6 33 33 H 1.08998 * 109.47602 * 324.07550 * 9 8 6 34 34 H 1.08997 * 109.47264 * 210.00387 * 10 8 6 35 35 H 1.09008 * 109.47172 * 330.00511 * 10 8 6 36 36 H 1.09005 * 109.47367 * 299.99860 * 11 10 8 37 37 H 1.08995 * 109.47354 * 60.00177 * 11 10 8 38 38 H 1.08997 * 109.47088 * 300.00089 * 12 11 10 39 39 H 1.09003 * 109.47004 * 59.99556 * 12 11 10 40 40 H 0.97007 * 119.99494 * 0.02562 * 13 12 11 41 41 H 0.97003 * 120.00446 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2103 2.2096 1.0855 5 6 2.6929 3.4412 0.5832 6 6 3.0420 4.6377 1.3759 7 8 2.8122 4.6645 2.5694 8 7 3.6154 5.6998 0.7761 9 6 3.8219 5.6987 -0.6742 10 6 4.0321 6.8553 1.5745 11 6 5.4771 6.6605 2.0379 12 6 5.9121 7.8670 2.8723 13 7 7.2955 7.6804 3.3166 14 6 7.9039 8.6387 4.0826 15 1 7.3637 9.5319 4.3595 16 6 9.2149 8.4619 4.5031 17 7 9.8734 7.3735 4.1652 18 14 10.0446 9.7688 5.5486 19 1 9.2840 9.9490 6.8113 20 1 11.4325 9.3441 5.8625 21 1 10.0770 11.0525 4.8028 22 7 2.7706 3.3183 -0.7269 23 7 2.3937 2.1428 -1.0825 24 1 2.3700 1.8208 -1.9972 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0235 1.9529 2.1178 31 1 2.9086 6.0251 -1.1716 32 1 4.6356 6.3791 -0.9259 33 1 4.0753 4.6914 -1.0045 34 1 3.9634 7.7590 0.9690 35 1 3.3813 6.9500 2.4438 36 1 5.5458 5.7568 2.6435 37 1 6.1278 6.5659 1.1687 38 1 5.8433 8.7710 2.2673 39 1 5.2612 7.9613 3.7416 40 1 7.7808 6.8782 3.0676 41 1 10.7897 7.2502 4.4588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699491139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:08 Heat of formation + Delta-G solvation = 23.405006 kcal Electronic energy + Delta-G solvation = -21174.786210 eV Core-core repulsion = 17897.738148 eV Total energy + Delta-G solvation = -3277.048063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.74144 -40.69277 -37.55588 -36.45347 -35.21952 -34.11651 -32.93459 -31.53953 -30.25131 -27.93983 -27.25020 -25.33585 -24.65447 -23.59022 -22.40173 -22.04331 -20.03088 -19.15665 -18.82905 -17.75897 -17.23847 -17.01010 -16.52502 -16.06348 -15.86680 -15.32435 -15.25529 -15.17619 -14.85910 -14.55312 -14.20680 -13.98516 -13.62783 -13.41319 -13.33524 -13.16803 -12.77282 -12.72534 -12.47577 -12.42912 -12.10015 -11.98301 -11.83526 -11.81074 -11.57957 -11.18609 -10.94060 -10.45143 -9.97024 -9.69865 -9.03510 -7.96309 -5.26744 0.47182 1.08697 1.46315 1.51081 1.57026 1.76362 2.13523 2.30105 2.56078 3.25943 3.36756 3.67354 3.84713 3.87311 4.04220 4.23638 4.28000 4.40231 4.42541 4.51625 4.53473 4.59747 4.68450 4.72514 4.76640 4.81282 4.88102 5.02672 5.08724 5.20240 5.25222 5.29182 5.31726 5.40657 5.47296 5.54517 6.09161 6.25417 6.31451 6.80630 7.08151 7.30680 8.05744 8.29689 9.27565 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034400 B = 0.002678 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.759438 B =10451.313008 C =10686.195653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.040 3.960 4 C -0.205 4.205 5 C -0.033 4.033 6 C 0.587 3.413 7 O -0.575 6.575 8 N -0.601 5.601 9 C 0.074 3.926 10 C 0.126 3.874 11 C -0.121 4.121 12 C 0.155 3.845 13 N -0.750 5.750 14 C -0.250 4.250 15 H 0.079 0.921 16 C -0.080 4.080 17 N -0.973 5.973 18 Si 0.981 3.019 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.273 1.273 22 N -0.254 5.254 23 N -0.364 5.364 24 H 0.462 0.538 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.155 0.845 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.017 0.983 40 H 0.372 0.628 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.867 -15.275 -17.254 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.087 4.087 4 C -0.233 4.233 5 C -0.192 4.192 6 C 0.375 3.625 7 O -0.453 6.453 8 N -0.332 5.332 9 C -0.068 4.068 10 C 0.003 3.997 11 C -0.160 4.160 12 C 0.029 3.971 13 N -0.393 5.393 14 C -0.382 4.382 15 H 0.097 0.903 16 C -0.272 4.272 17 N -0.624 5.624 18 Si 0.809 3.191 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.199 1.199 22 N -0.092 5.092 23 N -0.081 5.081 24 H 0.310 0.690 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.172 0.828 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.035 0.965 40 H 0.203 0.797 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.693 -14.454 -17.490 30.708 hybrid contribution 0.754 -0.156 1.028 1.284 sum -19.938 -14.610 -16.462 29.698 Atomic orbital electron populations 1.21775 0.93555 1.03218 1.02055 1.20298 0.96632 0.86399 1.05764 1.21811 1.02936 0.97771 0.86174 1.21653 1.08175 0.92662 1.00808 1.21703 1.10033 0.96719 0.90774 1.17471 0.77164 0.82045 0.85825 1.90769 1.56429 1.81955 1.16185 1.47827 1.58709 1.16699 1.09958 1.22273 1.02475 1.04949 0.77068 1.21418 0.93765 0.88073 0.96437 1.21866 0.96990 0.97739 0.99449 1.20699 0.84961 0.96092 0.95386 1.42613 1.11115 1.23038 1.62490 1.19667 0.95506 0.99419 1.23567 0.90346 1.25692 0.97888 1.00288 1.03340 1.69834 1.11371 1.29082 1.52073 0.85107 0.76973 0.78396 0.78647 1.20379 1.21975 1.19922 1.73652 1.18349 1.03451 1.13744 1.43554 1.45731 1.07936 1.10913 0.68968 0.90015 0.93330 0.92502 0.88421 0.87788 0.82755 0.91148 0.89895 0.88880 0.87096 0.90888 0.94434 0.91488 0.94605 0.96535 0.79698 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 71.98 0.71 -0.23 16 2 C -0.05 -0.34 6.49 29.85 0.19 -0.15 16 3 C 0.04 0.57 6.48 41.40 0.27 0.84 16 4 C -0.20 -4.69 10.73 22.41 0.24 -4.45 16 5 C -0.03 -0.90 6.82 42.46 0.29 -0.61 16 6 C 0.59 19.48 7.68 86.75 0.67 20.15 16 7 O -0.58 -23.47 16.49 -3.94 -0.06 -23.54 16 8 N -0.60 -17.16 2.87 -850.36 -2.44 -19.60 16 9 C 0.07 1.55 9.63 127.77 1.23 2.78 16 10 C 0.13 3.76 5.41 86.38 0.47 4.23 16 11 C -0.12 -4.47 5.65 30.59 0.17 -4.30 16 12 C 0.16 6.75 6.26 86.38 0.54 7.29 16 13 N -0.75 -41.42 5.60 -343.45 -1.92 -43.35 16 14 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 15 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 16 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 17 N -0.97 -62.34 13.06 21.65 0.28 -62.05 16 18 Si 0.98 47.78 29.55 68.60 2.03 49.81 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 N -0.25 -5.19 8.76 -48.17 -0.42 -5.61 16 23 N -0.36 -4.72 6.83 -47.93 -0.33 -5.04 16 24 H 0.46 1.98 8.96 -219.99 -1.97 0.01 16 25 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.52 8.03 -2.38 -0.02 1.50 16 33 H 0.09 1.95 5.36 -2.39 -0.01 1.94 16 34 H 0.11 2.61 8.07 -2.39 -0.02 2.59 16 35 H 0.07 2.40 7.38 -2.38 -0.02 2.38 16 36 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.37 21.86 7.67 -92.70 -0.71 21.15 16 41 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -80.23 346.10 1.57 -78.66 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -1.64 Total: 23.51 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 6.09 Total: 7.22 kcal Atomic # 7 Polarization: -130.83 SS G_CDS: -4.83 Total: -135.66 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.54 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -80.23 1.57 -78.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699491139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.063 kcal (2) G-P(sol) polarization free energy of solvation -80.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds