Wall clock time and date at job start Tue Mar 31 2020 01:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47238 * 2 1 4 4 N 1.30444 * 125.98666 * 269.97867 * 3 2 1 5 5 N 1.39936 * 108.89615 * 179.76573 * 4 3 2 6 6 H 0.96991 * 125.75703 * 180.27521 * 5 4 3 7 7 C 1.34259 * 108.48962 * 0.42714 * 5 4 3 8 8 C 1.38046 * 107.41487 * 359.58410 * 7 5 4 9 9 C 1.47438 * 126.41219 * 180.26228 * 8 7 5 10 10 O 1.21600 * 119.99882 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99857 * 359.97438 * 9 8 7 12 12 C 1.46502 * 119.99525 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46822 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47283 * 64.99987 * 13 12 11 15 15 C 1.53005 * 109.46959 * 184.99480 * 13 12 11 16 16 N 1.46496 * 109.47114 * 304.99459 * 13 12 11 17 17 C 1.46504 * 120.00198 * 300.00467 * 16 13 12 18 18 C 1.36938 * 119.99864 * 119.99914 * 16 13 12 19 19 H 1.07997 * 119.99877 * 23.12023 * 18 16 13 20 20 C 1.38816 * 119.99891 * 203.11738 * 18 16 13 21 21 N 1.31616 * 120.00195 * 11.68704 * 20 18 16 22 22 Si 1.86801 * 119.99761 * 191.68847 * 20 18 16 23 23 H 1.48498 * 109.47234 * 90.00317 * 22 20 18 24 24 H 1.48500 * 109.47095 * 210.00088 * 22 20 18 25 25 H 1.48500 * 109.47287 * 329.99897 * 22 20 18 26 26 H 1.09001 * 109.46779 * 299.99538 * 1 2 3 27 27 H 1.08998 * 109.47337 * 59.99864 * 1 2 3 28 28 H 1.09004 * 109.46980 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47214 * 240.00402 * 2 1 3 30 30 H 1.08998 * 109.47337 * 120.00136 * 2 1 3 31 31 H 1.08003 * 126.29384 * 179.84924 * 7 5 4 32 32 H 0.96997 * 120.00295 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.47047 * 299.99063 * 12 11 9 34 34 H 1.08993 * 109.47544 * 59.99607 * 12 11 9 35 35 H 1.08996 * 109.47101 * 179.97438 * 15 13 12 36 36 H 1.08994 * 109.47050 * 300.00224 * 15 13 12 37 37 H 1.09001 * 109.46709 * 60.00156 * 15 13 12 38 38 H 1.08998 * 109.47271 * 93.93234 * 17 16 13 39 39 H 1.08999 * 109.46957 * 213.94126 * 17 16 13 40 40 H 1.09002 * 109.46496 * 333.93835 * 17 16 13 41 41 H 0.97001 * 120.00129 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2882 2.1434 -1.0555 5 7 2.7288 3.4063 -0.6442 6 1 2.9821 4.1367 -1.2300 7 6 2.7451 3.4353 0.6979 8 6 2.3091 2.2035 1.1432 9 6 2.1602 1.7834 2.5486 10 8 1.7635 0.6640 2.8097 11 7 2.4638 2.6401 3.5438 12 6 2.3163 2.2224 4.9402 13 6 2.7246 3.3730 5.8624 14 1 2.0310 4.2042 5.7353 15 6 2.6901 2.8979 7.3165 16 7 4.0806 3.8123 5.5243 17 6 5.1997 2.8712 5.6157 18 6 4.3021 5.1025 5.1226 19 1 3.6054 5.8807 5.3971 20 6 5.4223 5.4102 4.3627 21 7 6.1446 4.4451 3.8345 22 14 5.9044 7.1942 4.0897 23 1 6.8250 7.6291 5.1706 24 1 6.5848 7.3277 2.7765 25 1 4.6867 8.0440 4.1048 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.0405 4.2705 1.3158 32 1 2.7806 3.5329 3.3354 33 1 1.2772 1.9543 5.1314 34 1 2.9551 1.3602 5.1310 35 1 2.9813 3.7174 7.9734 36 1 1.6812 2.5711 7.5680 37 1 3.3836 2.0667 7.4436 38 1 5.3681 2.4112 4.6420 39 1 6.0983 3.4043 5.9261 40 1 4.9651 2.0978 6.3471 41 1 6.9276 4.6601 3.3038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700467270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:12 Heat of formation + Delta-G solvation = 27.263121 kcal Electronic energy + Delta-G solvation = -22712.533801 eV Core-core repulsion = 19435.653039 eV Total energy + Delta-G solvation = -3276.880762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39476 -40.09260 -38.25014 -35.50043 -34.94138 -33.73589 -31.57854 -31.26067 -30.77338 -27.95342 -27.04901 -24.99658 -24.87978 -23.78215 -21.18367 -21.04146 -20.35947 -19.25125 -18.76394 -17.33865 -17.04771 -16.57917 -16.30943 -15.89107 -15.60838 -15.23201 -15.01076 -14.90820 -14.54048 -14.35184 -13.89795 -13.71363 -13.52401 -13.25243 -13.12950 -12.80597 -12.58591 -12.44769 -12.40834 -12.23192 -12.13731 -12.03252 -11.77231 -11.69060 -11.41698 -10.73989 -10.56439 -10.52754 -9.99928 -9.59764 -8.71308 -7.71704 -5.21423 0.55913 1.12614 1.50422 1.56308 1.61019 1.79260 2.48721 2.56637 2.62940 3.41209 3.48837 3.71518 3.77123 4.12740 4.19668 4.29281 4.43970 4.49108 4.51252 4.60384 4.67904 4.73899 4.80081 4.90214 4.95348 5.06606 5.14452 5.21141 5.32442 5.33709 5.35811 5.48269 5.55180 5.72045 5.77839 5.81532 6.23355 6.40797 6.51473 6.86132 7.23378 7.47078 7.94941 8.41797 9.29138 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.006059 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.589348 B = 4619.836802 C = 5933.250508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.047 4.047 3 C 0.125 3.875 4 N -0.317 5.317 5 N -0.448 5.448 6 H 0.458 0.542 7 C 0.130 3.870 8 C -0.313 4.313 9 C 0.585 3.415 10 O -0.586 6.586 11 N -0.701 5.701 12 C 0.117 3.883 13 C 0.157 3.843 14 H 0.075 0.925 15 C -0.150 4.150 16 N -0.601 5.601 17 C 0.183 3.817 18 C -0.255 4.255 19 H 0.074 0.926 20 C -0.038 4.038 21 N -0.928 5.928 22 Si 0.956 3.044 23 H -0.300 1.300 24 H -0.299 1.299 25 H -0.266 1.266 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.203 0.797 32 H 0.408 0.592 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.000 1.000 39 H 0.013 0.987 40 H 0.020 0.980 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 -1.882 -4.640 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.043 4.043 4 N -0.140 5.140 5 N -0.154 5.154 6 H 0.306 0.694 7 C -0.024 4.024 8 C -0.327 4.327 9 C 0.374 3.626 10 O -0.469 6.469 11 N -0.350 5.350 12 C -0.009 4.009 13 C 0.050 3.950 14 H 0.093 0.907 15 C -0.209 4.209 16 N -0.324 5.324 17 C 0.038 3.962 18 C -0.386 4.386 19 H 0.091 0.909 20 C -0.234 4.234 21 N -0.575 5.575 22 Si 0.786 3.214 23 H -0.228 1.228 24 H -0.226 1.226 25 H -0.191 1.191 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.220 0.780 32 H 0.244 0.756 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.230 -2.588 -5.808 11.208 hybrid contribution 1.330 1.799 0.377 2.268 sum -7.900 -0.789 -5.431 9.619 Atomic orbital electron populations 1.21540 0.92971 1.02911 1.01213 1.20117 0.97363 0.87438 1.03716 1.22696 0.95258 0.97636 0.88708 1.77013 1.22976 0.91507 1.22502 1.46066 1.51004 1.12928 1.05408 0.69362 1.23476 0.94179 0.98858 0.85923 1.20370 1.21273 0.96820 0.94275 1.17484 0.76566 0.84207 0.84378 1.90639 1.50025 1.21225 1.84993 1.45693 1.66031 1.17407 1.05857 1.21826 0.99929 0.98110 0.81046 1.20841 0.86515 0.94616 0.93074 0.90681 1.22064 1.01936 1.00999 0.95882 1.44061 1.01712 1.08790 1.77879 1.20397 0.89307 0.90730 0.95805 1.19507 1.08259 0.85288 1.25500 0.90850 1.25560 0.99916 0.99645 0.98313 1.70251 1.18905 1.31235 1.37063 0.85452 0.78094 0.81823 0.76056 1.22801 1.22623 1.19082 0.94019 0.92443 0.90113 0.89344 0.89942 0.78039 0.75609 0.91271 0.94232 0.92806 0.90515 0.93448 0.98190 0.96817 0.96131 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.89 71.98 0.71 -2.44 16 2 C -0.05 -1.34 5.97 29.85 0.18 -1.16 16 3 C 0.12 4.05 6.52 43.52 0.28 4.33 16 4 N -0.32 -9.58 12.63 -46.68 -0.59 -10.17 16 5 N -0.45 -11.25 7.29 -56.31 -0.41 -11.66 16 6 H 0.46 7.86 8.96 -213.44 -1.91 5.94 16 7 C 0.13 3.73 11.52 84.28 0.97 4.70 16 8 C -0.31 -10.74 6.13 -20.15 -0.12 -10.87 16 9 C 0.59 22.59 7.81 86.67 0.68 23.27 16 10 O -0.59 -24.84 14.92 -4.03 -0.06 -24.90 16 11 N -0.70 -26.18 5.38 -466.36 -2.51 -28.69 16 12 C 0.12 4.17 4.97 86.38 0.43 4.60 16 13 C 0.16 5.54 2.87 44.99 0.13 5.67 16 14 H 0.08 2.57 7.87 -2.39 -0.02 2.55 16 15 C -0.15 -4.46 9.18 71.98 0.66 -3.80 16 16 N -0.60 -26.36 2.29 -702.76 -1.61 -27.96 16 17 C 0.18 8.56 8.11 127.77 1.04 9.60 16 18 C -0.26 -12.11 9.32 84.03 0.78 -11.33 16 19 H 0.07 3.36 7.82 -2.91 -0.02 3.34 16 20 C -0.04 -1.90 5.12 84.86 0.43 -1.46 16 21 N -0.93 -49.51 10.65 21.65 0.23 -49.28 16 22 Si 0.96 40.64 29.57 68.60 2.03 42.66 16 23 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 24 H -0.30 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.08 2.67 6.55 -2.39 -0.02 2.66 16 31 H 0.20 5.21 7.46 -2.91 -0.02 5.19 16 32 H 0.41 15.54 6.81 -92.71 -0.63 14.91 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.46 6.66 -2.39 -0.02 1.44 16 38 H 0.00 -0.01 7.41 -2.39 -0.02 -0.03 16 39 H 0.01 0.68 7.23 -2.39 -0.02 0.67 16 40 H 0.02 0.85 6.43 -2.39 -0.02 0.83 16 41 H 0.24 12.98 8.31 -92.71 -0.77 12.21 16 Total: -1.00 -62.26 337.80 1.76 -60.50 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -1.49 Total: 28.39 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 6.17 Total: 21.10 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -4.88 Total: -127.76 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.06 Total: -24.90 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -62.26 1.76 -60.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700467270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.765 kcal (2) G-P(sol) polarization free energy of solvation -62.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds