Wall clock time and date at job start Tue Mar 31 2020 01:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47160 * 2 1 4 4 N 1.30452 * 125.98899 * 270.16678 * 3 2 1 5 5 N 1.39937 * 108.89736 * 180.26531 * 4 3 2 6 6 H 0.96998 * 125.74975 * 179.74311 * 5 4 3 7 7 C 1.34259 * 108.49158 * 359.73430 * 5 4 3 8 8 C 1.38041 * 107.41919 * 0.02562 * 7 5 4 9 9 C 1.47422 * 126.41674 * 179.97438 * 8 7 5 10 10 O 1.21606 * 120.00305 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00218 * 0.02743 * 9 8 7 12 12 C 1.46505 * 120.00288 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47075 * 179.72226 * 12 11 9 14 14 H 1.09006 * 109.47181 * 294.99954 * 13 12 11 15 15 C 1.52995 * 109.47142 * 175.00125 * 13 12 11 16 16 N 1.46494 * 109.47339 * 55.00102 * 13 12 11 17 17 C 1.46504 * 120.00123 * 59.99595 * 16 13 12 18 18 C 1.36941 * 120.00219 * 240.00216 * 16 13 12 19 19 H 1.08004 * 119.99782 * 23.09328 * 18 16 13 20 20 C 1.38811 * 120.00053 * 203.09676 * 18 16 13 21 21 N 1.31619 * 119.99959 * 12.99307 * 20 18 16 22 22 Si 1.86802 * 119.99985 * 192.99107 * 20 18 16 23 23 H 1.48491 * 109.47103 * 60.00165 * 22 20 18 24 24 H 1.48506 * 109.46960 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46825 * 299.99911 * 22 20 18 26 26 H 1.08999 * 109.46646 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47043 * 300.00451 * 1 2 3 28 28 H 1.09004 * 109.46608 * 60.00176 * 1 2 3 29 29 H 1.09000 * 109.47534 * 239.99437 * 2 1 3 30 30 H 1.09005 * 109.47219 * 119.99378 * 2 1 3 31 31 H 1.07999 * 126.28764 * 179.97438 * 7 5 4 32 32 H 0.97005 * 119.99681 * 359.72053 * 11 9 8 33 33 H 1.08990 * 109.47147 * 299.72018 * 12 11 9 34 34 H 1.09000 * 109.46892 * 59.72211 * 12 11 9 35 35 H 1.09004 * 109.47540 * 179.97438 * 15 13 12 36 36 H 1.08997 * 109.47107 * 300.00125 * 15 13 12 37 37 H 1.09007 * 109.47128 * 60.00217 * 15 13 12 38 38 H 1.09000 * 109.46752 * 95.12832 * 17 16 13 39 39 H 1.09001 * 109.47317 * 215.12903 * 17 16 13 40 40 H 1.09000 * 109.46718 * 335.12977 * 17 16 13 41 41 H 0.97001 * 120.00334 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2850 2.1445 -1.0555 5 7 2.7377 3.4032 -0.6443 6 1 2.9984 4.1309 -1.2302 7 6 2.7503 3.4335 0.6979 8 6 2.3096 2.2035 1.1432 9 6 2.1612 1.7833 2.5485 10 8 1.7607 0.6651 2.8097 11 7 2.4692 2.6382 3.5437 12 6 2.3212 2.2208 4.9402 13 6 2.7411 3.3672 5.8624 14 1 3.8048 3.5671 5.7323 15 6 2.4696 2.9774 7.3167 16 7 1.9738 4.5694 5.5276 17 6 0.5120 4.5556 5.6232 18 6 2.6229 5.7060 5.1252 19 1 3.6130 5.6402 4.6986 20 6 2.0085 6.9428 5.2657 21 7 0.9278 7.0603 6.0077 22 14 2.7155 8.4405 4.4016 23 1 2.7230 8.2081 2.9350 24 1 1.8817 9.6298 4.7106 25 1 4.1043 8.6742 4.8729 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.0510 4.2668 1.3156 32 1 2.7925 3.5288 3.3353 33 1 1.2804 1.9617 5.1335 34 1 2.9528 1.3527 5.1288 35 1 2.7692 3.7939 7.9738 36 1 1.4060 2.7775 7.4467 37 1 3.0406 2.0829 7.5658 38 1 0.2076 4.9496 6.5928 39 1 0.0902 5.1741 4.8310 40 1 0.1506 3.5327 5.5169 41 1 0.4986 7.9246 6.1062 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700467273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:16 Heat of formation + Delta-G solvation = 26.023535 kcal Electronic energy + Delta-G solvation = -22514.712886 eV Core-core repulsion = 19237.778372 eV Total energy + Delta-G solvation = -3276.934515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.39809 -40.12613 -38.26048 -35.53177 -34.96042 -33.70732 -31.58734 -31.26534 -30.82526 -27.96769 -27.07013 -25.00898 -24.89889 -23.79686 -21.20422 -21.06956 -20.36441 -19.27296 -18.76795 -17.32348 -17.09366 -16.61568 -16.31228 -15.88499 -15.61811 -15.20396 -15.08699 -14.93141 -14.49647 -14.43537 -13.94917 -13.74938 -13.44521 -13.25807 -13.00271 -12.83180 -12.58863 -12.46635 -12.41338 -12.29100 -12.13826 -12.07566 -11.77188 -11.73686 -11.45407 -10.75419 -10.55826 -10.53033 -10.01839 -9.62613 -8.72240 -7.73857 -5.22561 0.56099 1.12284 1.52826 1.54271 1.60677 1.80597 2.47378 2.56631 2.58004 3.41086 3.48973 3.70293 3.77376 4.11034 4.19806 4.28028 4.42002 4.47096 4.49946 4.59001 4.66951 4.72823 4.80608 4.82917 5.01536 5.05784 5.09700 5.20324 5.28464 5.31673 5.41613 5.46790 5.49296 5.69866 5.74932 5.79011 6.25172 6.39827 6.51774 6.83538 7.21984 7.45250 7.94060 8.41178 9.29477 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.005479 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.872646 B = 5109.508870 C = 6244.058125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.046 4.046 3 C 0.125 3.875 4 N -0.319 5.319 5 N -0.448 5.448 6 H 0.459 0.541 7 C 0.129 3.871 8 C -0.314 4.314 9 C 0.586 3.414 10 O -0.584 6.584 11 N -0.704 5.704 12 C 0.120 3.880 13 C 0.157 3.843 14 H 0.076 0.924 15 C -0.149 4.149 16 N -0.601 5.601 17 C 0.185 3.815 18 C -0.255 4.255 19 H 0.085 0.915 20 C -0.052 4.052 21 N -0.940 5.940 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.309 1.309 25 H -0.278 1.278 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.214 0.786 32 H 0.408 0.592 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.000 1.000 39 H 0.012 0.988 40 H 0.018 0.982 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.772 -8.538 -10.485 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.086 4.086 3 C -0.043 4.043 4 N -0.142 5.142 5 N -0.154 5.154 6 H 0.308 0.692 7 C -0.026 4.026 8 C -0.329 4.329 9 C 0.375 3.625 10 O -0.466 6.466 11 N -0.354 5.354 12 C -0.006 4.006 13 C 0.050 3.950 14 H 0.095 0.905 15 C -0.209 4.209 16 N -0.324 5.324 17 C 0.040 3.960 18 C -0.385 4.385 19 H 0.102 0.898 20 C -0.247 4.247 21 N -0.587 5.587 22 Si 0.792 3.208 23 H -0.195 1.195 24 H -0.236 1.236 25 H -0.204 1.204 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.230 0.770 32 H 0.244 0.756 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.018 0.982 39 H 0.031 0.969 40 H 0.036 0.964 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.417 -9.128 -11.540 15.362 hybrid contribution 0.161 2.142 0.591 2.228 sum 4.578 -6.986 -10.949 13.771 Atomic orbital electron populations 1.21558 0.93669 1.02811 1.00957 1.20106 0.96790 0.87691 1.03964 1.22687 0.95232 0.97562 0.88843 1.77052 1.22773 0.91806 1.22566 1.46108 1.50441 1.13197 1.05606 0.69231 1.23611 0.94564 0.98501 0.85911 1.20353 1.21536 0.97006 0.94027 1.17490 0.76534 0.84194 0.84310 1.90667 1.49280 1.21700 1.84944 1.45686 1.66641 1.17331 1.05713 1.21729 1.00509 0.97606 0.80739 1.20788 0.95974 0.85728 0.92539 0.90539 1.22078 1.01136 1.00845 0.96812 1.44108 1.01498 1.08869 1.77930 1.20351 0.83563 0.94215 0.97859 1.19577 1.01328 0.84695 1.32874 0.89761 1.25764 0.98905 1.00152 0.99890 1.70247 1.23391 1.23365 1.41716 0.85408 0.77291 0.79004 0.79075 1.19507 1.23611 1.20386 0.90150 0.94456 0.92700 0.89154 0.89503 0.76964 0.75584 0.93693 0.90932 0.94100 0.93927 0.90563 0.98191 0.96938 0.96387 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.89 71.98 0.71 -2.46 16 2 C -0.05 -1.18 5.97 29.85 0.18 -1.01 16 3 C 0.12 3.56 6.52 43.52 0.28 3.84 16 4 N -0.32 -8.43 12.63 -46.67 -0.59 -9.02 16 5 N -0.45 -9.07 7.29 -56.32 -0.41 -9.48 16 6 H 0.46 5.70 8.96 -213.43 -1.91 3.79 16 7 C 0.13 2.89 11.52 84.28 0.97 3.86 16 8 C -0.31 -9.21 6.13 -20.15 -0.12 -9.33 16 9 C 0.59 19.83 7.81 86.66 0.68 20.50 16 10 O -0.58 -22.58 14.92 -4.05 -0.06 -22.64 16 11 N -0.70 -22.78 5.38 -466.38 -2.51 -25.29 16 12 C 0.12 3.97 4.93 86.38 0.43 4.40 16 13 C 0.16 5.57 2.87 44.99 0.13 5.70 16 14 H 0.08 2.61 7.87 -2.38 -0.02 2.59 16 15 C -0.15 -4.93 9.19 71.98 0.66 -4.27 16 16 N -0.60 -26.50 2.28 -702.78 -1.61 -28.11 16 17 C 0.19 8.78 8.01 127.77 1.02 9.81 16 18 C -0.25 -12.11 9.31 84.03 0.78 -11.33 16 19 H 0.08 3.67 7.82 -2.91 -0.02 3.65 16 20 C -0.05 -2.66 5.10 84.86 0.43 -2.23 16 21 N -0.94 -53.04 10.72 21.65 0.23 -52.81 16 22 Si 0.96 41.00 29.57 68.60 2.03 43.03 16 23 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.31 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.48 6.56 -2.38 -0.02 2.46 16 31 H 0.21 3.65 7.46 -2.91 -0.02 3.63 16 32 H 0.41 12.70 6.81 -92.70 -0.63 12.07 16 33 H 0.04 1.64 6.86 -2.39 -0.02 1.62 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.46 7.67 -2.39 -0.02 1.44 16 37 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.00 -0.01 7.34 -2.39 -0.02 -0.03 16 39 H 0.01 0.62 7.35 -2.39 -0.02 0.60 16 40 H 0.02 0.76 6.53 -2.39 -0.02 0.75 16 41 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -65.70 337.91 1.75 -63.95 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -1.49 Total: 22.88 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 6.15 Total: 17.48 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -4.88 Total: -124.71 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.64 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -65.70 1.75 -63.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700467273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.976 kcal (2) G-P(sol) polarization free energy of solvation -65.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds