Wall clock time and date at job start Tue Mar 31 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 C 1.53000 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47295 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46949 * 54.99993 * 5 4 3 7 7 C 1.53003 * 109.46863 * 175.00053 * 5 4 3 8 8 N 1.46503 * 109.46694 * 175.00178 * 7 5 4 9 9 C 1.36932 * 119.99765 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00454 * 359.97438 * 9 8 7 11 11 C 1.38820 * 119.99866 * 179.97438 * 9 8 7 12 12 N 1.31613 * 119.99917 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99713 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47590 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47101 * 120.00378 * 13 11 9 16 16 H 1.48503 * 109.46922 * 239.99846 * 13 11 9 17 17 N 1.46499 * 109.46907 * 295.00273 * 5 4 3 18 18 C 1.34773 * 120.00135 * 85.00138 * 17 5 4 19 19 O 1.21605 * 119.99825 * 359.97438 * 18 17 5 20 20 C 1.47425 * 119.99866 * 179.97438 * 18 17 5 21 21 C 1.41288 * 126.41660 * 0.02669 * 20 18 17 22 22 N 1.30449 * 108.02633 * 179.71701 * 21 20 18 23 23 N 1.39939 * 108.89553 * 0.40857 * 22 21 20 24 24 H 0.97001 * 125.75870 * 179.85304 * 23 22 21 25 25 C 1.34266 * 108.48792 * 359.57838 * 23 22 21 26 26 H 1.09003 * 109.47150 * 299.99862 * 1 2 3 27 27 H 1.08991 * 109.47454 * 60.00331 * 1 2 3 28 28 H 1.09004 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47850 * 240.00086 * 2 1 3 30 30 H 1.09005 * 109.47278 * 119.99579 * 2 1 3 31 31 H 1.09003 * 109.47071 * 60.00090 * 3 2 1 32 32 H 1.08991 * 109.47284 * 300.00152 * 3 2 1 33 33 H 1.09003 * 109.47266 * 59.99729 * 4 3 2 34 34 H 1.09005 * 109.47011 * 300.00253 * 4 3 2 35 35 H 1.08996 * 109.47344 * 294.99984 * 7 5 4 36 36 H 1.09001 * 109.47235 * 55.00515 * 7 5 4 37 37 H 0.97002 * 120.00119 * 359.97438 * 8 7 5 38 38 H 0.97008 * 120.00021 * 179.97438 * 12 11 9 39 39 H 0.97000 * 119.99677 * 264.99957 * 17 5 4 40 40 H 1.08002 * 125.98882 * 359.95631 * 21 20 18 41 41 H 1.08002 * 126.29040 * 180.25994 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4246 0.8413 7 6 5.6047 2.8870 0.1264 8 7 6.1029 4.2595 0.0060 9 6 7.4467 4.5096 0.0876 10 1 8.1393 3.6953 0.2410 11 6 7.9188 5.8100 -0.0270 12 7 7.0748 6.8025 -0.2135 13 14 9.7520 6.1513 0.0850 14 1 10.4811 4.8752 0.2971 15 1 10.2158 6.7833 -1.1763 16 1 10.0163 7.0670 1.2237 17 7 3.6928 3.5393 -1.2523 18 6 2.4755 4.1061 -1.3683 19 8 1.6984 4.0741 -0.4335 20 6 2.0862 4.7649 -2.6284 21 6 2.8769 4.8805 -3.7936 22 7 2.1814 5.5222 -4.6914 23 7 0.9343 5.8514 -4.1485 24 1 0.2264 6.3324 -4.6051 25 6 0.8806 5.3839 -2.8910 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9329 0.9289 0.8909 35 1 5.8894 2.4810 1.0970 36 1 6.0356 2.2734 -0.6648 37 1 5.4809 4.9909 -0.1322 38 1 7.4047 7.7113 -0.2932 39 1 4.3126 3.5645 -1.9981 40 1 3.8799 4.5004 -3.9202 41 1 0.0472 5.4752 -2.2102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700516301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:21 Heat of formation + Delta-G solvation = 4.985647 kcal Electronic energy + Delta-G solvation = -22114.703177 eV Core-core repulsion = 18836.856390 eV Total energy + Delta-G solvation = -3277.846786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.27325 -40.49549 -37.71382 -36.20640 -35.03267 -33.28981 -32.52384 -31.79322 -30.80025 -28.63632 -25.87571 -24.29469 -23.70744 -22.90976 -21.76321 -21.58563 -20.91534 -19.62174 -19.05457 -17.38730 -17.02151 -16.65657 -16.26803 -15.89954 -15.49782 -15.46195 -15.26289 -14.99367 -14.84979 -14.37733 -14.05842 -13.78208 -13.71168 -13.41893 -13.10130 -12.81193 -12.80646 -12.44580 -12.17034 -12.04325 -11.94528 -11.81224 -11.78024 -11.34065 -11.28886 -10.96148 -10.80615 -10.71431 -9.94732 -9.64001 -8.96447 -7.90767 -5.19697 0.62557 1.19176 1.50125 1.50772 1.60601 1.84189 2.45743 2.59296 2.61805 3.43863 3.65098 3.75878 3.97059 4.09127 4.14914 4.20625 4.31661 4.38438 4.42560 4.44928 4.62571 4.66614 4.79010 4.92087 4.98103 5.01536 5.05720 5.16013 5.20193 5.30201 5.35658 5.39619 5.50130 5.55058 5.65620 5.76454 6.26479 6.29918 6.50660 6.78525 7.37587 7.45613 8.12447 8.35957 9.32353 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.005380 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.248453 B = 5203.533151 C = 7075.755006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.117 4.117 5 C 0.150 3.850 6 H 0.059 0.941 7 C 0.145 3.855 8 N -0.742 5.742 9 C -0.240 4.240 10 H 0.079 0.921 11 C -0.073 4.073 12 N -0.968 5.968 13 Si 0.970 3.030 14 H -0.264 1.264 15 H -0.294 1.294 16 H -0.298 1.298 17 N -0.704 5.704 18 C 0.593 3.407 19 O -0.580 6.580 20 C -0.316 4.316 21 C 0.085 3.915 22 N -0.321 5.321 23 N -0.449 5.449 24 H 0.460 0.540 25 C 0.145 3.855 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.374 0.626 38 H 0.248 0.752 39 H 0.405 0.595 40 H 0.199 0.801 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.598 -10.202 -6.108 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.156 4.156 5 C 0.045 3.955 6 H 0.077 0.923 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.372 4.372 10 H 0.097 0.903 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.800 3.200 14 H -0.188 1.188 15 H -0.222 1.222 16 H -0.226 1.226 17 N -0.354 5.354 18 C 0.382 3.618 19 O -0.462 6.462 20 C -0.331 4.331 21 C -0.103 4.103 22 N -0.143 5.143 23 N -0.156 5.156 24 H 0.308 0.692 25 C -0.010 4.010 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.207 0.793 38 H 0.057 0.943 39 H 0.240 0.760 40 H 0.216 0.784 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.936 -9.850 -6.624 19.078 hybrid contribution 0.850 0.954 0.431 1.349 sum -14.085 -8.896 -6.193 17.773 Atomic orbital electron populations 1.21729 0.95806 1.01718 1.01323 1.21547 0.96058 0.96172 1.02145 1.21534 0.94600 0.96445 1.01517 1.21915 0.96119 0.94248 1.03341 1.21084 0.93912 0.94037 0.86450 0.92271 1.21126 0.91117 0.86789 0.99184 1.42539 1.04459 1.03881 1.87675 1.19675 0.85080 0.92646 1.39818 0.90288 1.25513 1.01595 0.95734 1.03710 1.69843 1.34506 0.99003 1.58522 0.85117 0.80614 0.77816 0.76457 1.18844 1.22182 1.22595 1.45678 1.15863 1.57145 1.16681 1.17394 0.81419 0.76804 0.86205 1.90722 1.52530 1.61764 1.41172 1.20404 0.98237 1.17299 0.97196 1.24335 1.00225 0.95636 0.90075 1.77102 0.93014 1.21075 1.23075 1.46212 1.14368 1.44492 1.10570 0.69224 1.23379 0.98723 0.91497 0.87353 0.93367 0.93495 0.91689 0.91750 0.91588 0.93700 0.93102 0.90576 0.89991 0.94580 0.94214 0.79335 0.94268 0.75992 0.78448 0.76739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.91 71.98 0.71 -2.18 16 2 C -0.12 -2.53 5.93 30.59 0.18 -2.35 16 3 C -0.10 -2.73 3.82 30.59 0.12 -2.61 16 4 C -0.12 -3.03 4.89 30.59 0.15 -2.88 16 5 C 0.15 4.94 2.42 44.99 0.11 5.05 16 6 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 7 C 0.14 5.43 5.82 86.38 0.50 5.93 16 8 N -0.74 -36.51 5.43 -343.44 -1.87 -38.38 16 9 C -0.24 -13.05 9.99 84.04 0.84 -12.22 16 10 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 11 C -0.07 -4.15 5.50 84.87 0.47 -3.69 16 12 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 13 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 16 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 17 N -0.70 -22.45 4.46 -445.80 -1.99 -24.44 16 18 C 0.59 19.49 6.38 86.66 0.55 20.05 16 19 O -0.58 -21.59 14.03 -4.05 -0.06 -21.65 16 20 C -0.32 -8.86 6.13 -20.15 -0.12 -8.98 16 21 C 0.09 2.29 11.50 85.65 0.99 3.27 16 22 N -0.32 -8.33 12.63 -56.27 -0.71 -9.04 16 23 N -0.45 -8.49 7.29 -56.31 -0.41 -8.90 16 24 H 0.46 4.86 8.96 -213.42 -1.91 2.95 16 25 C 0.14 3.08 11.82 84.27 1.00 4.08 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.04 1.37 7.85 -2.39 -0.02 1.35 16 32 H 0.05 1.50 5.64 -2.39 -0.01 1.49 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.37 20.13 7.33 -92.71 -0.68 19.45 16 38 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 39 H 0.40 12.28 7.56 -92.71 -0.70 11.58 16 40 H 0.20 4.70 7.50 -2.91 -0.02 4.68 16 41 H 0.22 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -71.30 341.78 0.53 -70.77 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -2.24 Total: 39.23 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 5.49 Total: 3.48 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -4.69 Total: -139.62 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.06 Total: -21.65 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.30 0.53 -70.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700516301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.754 kcal (2) G-P(sol) polarization free energy of solvation -71.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds