Wall clock time and date at job start Tue Mar 31 2020 01:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47439 * 2 1 4 4 C 1.35360 * 126.38323 * 84.99572 * 3 2 1 5 5 C 1.41508 * 105.49926 * 180.02562 * 4 3 2 6 6 C 1.47714 * 126.51553 * 180.02562 * 5 4 3 7 7 O 1.21567 * 119.99853 * 5.85693 * 6 5 4 8 8 N 1.34779 * 119.99706 * 185.86456 * 6 5 4 9 9 C 1.46498 * 120.00099 * 355.93917 * 8 6 5 10 10 C 1.46502 * 119.99557 * 175.94561 * 8 6 5 11 11 C 1.53001 * 109.47549 * 89.99695 * 10 8 6 12 12 H 1.09001 * 109.46836 * 295.00235 * 11 10 8 13 13 C 1.52990 * 109.47210 * 174.99633 * 11 10 8 14 14 N 1.46506 * 109.47060 * 54.99304 * 11 10 8 15 15 C 1.36930 * 120.00029 * 204.99897 * 14 11 10 16 16 H 1.07997 * 120.00242 * 0.02562 * 15 14 11 17 17 C 1.38813 * 119.99972 * 179.97438 * 15 14 11 18 18 N 1.31623 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47029 * 60.00925 * 19 17 15 21 21 H 1.48497 * 109.47054 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47381 * 300.00492 * 19 17 15 23 23 N 1.31800 * 106.96281 * 0.26366 * 5 4 3 24 24 N 1.28467 * 110.07636 * 359.55785 * 23 5 4 25 25 H 0.96998 * 124.88673 * 180.20141 * 24 23 5 26 26 H 1.09001 * 109.46894 * 60.00203 * 1 2 3 27 27 H 1.08996 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47233 * 300.00237 * 1 2 3 29 29 H 1.08995 * 109.47083 * 239.99601 * 2 1 3 30 30 H 1.09007 * 109.46780 * 120.00230 * 2 1 3 31 31 H 1.08005 * 127.25175 * 0.02568 * 4 3 2 32 32 H 1.09000 * 109.46972 * 275.68861 * 9 8 6 33 33 H 1.08994 * 109.46772 * 35.68599 * 9 8 6 34 34 H 1.08997 * 109.46904 * 155.69069 * 9 8 6 35 35 H 1.08995 * 109.47191 * 329.99346 * 10 8 6 36 36 H 1.09002 * 109.46296 * 209.99551 * 10 8 6 37 37 H 1.09004 * 109.47396 * 59.99728 * 13 11 10 38 38 H 1.08999 * 109.47098 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47454 * 299.99603 * 13 11 10 40 40 H 0.97006 * 119.99215 * 25.00507 * 14 11 10 41 41 H 0.96999 * 119.99894 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2105 2.2095 1.0856 5 6 2.6922 3.4415 0.5830 6 6 3.0418 4.6377 1.3759 7 8 3.0266 4.5878 2.5904 8 7 3.3776 5.7847 0.7527 9 6 3.4824 5.8211 -0.7081 10 6 3.6379 6.9949 1.5362 11 6 5.1227 7.0575 1.9000 12 1 5.3701 6.2270 2.5613 13 6 5.4186 8.3802 2.6095 14 7 5.9287 6.9668 0.6799 15 6 7.2129 6.4954 0.7411 16 1 7.6315 6.1902 1.6887 17 6 7.9763 6.4090 -0.4150 18 7 7.4660 6.7806 -1.5700 19 14 9.7279 5.7653 -0.3316 20 1 9.7208 4.3780 0.1980 21 1 10.3234 5.7732 -1.6919 22 1 10.5322 6.6335 0.5654 23 7 2.7645 3.3203 -0.7274 24 7 2.3883 2.1446 -1.0830 25 1 2.3601 1.8242 -1.9981 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.0242 1.9526 2.1180 32 1 4.4717 5.4772 -1.0101 33 1 2.7233 5.1710 -1.1430 34 1 3.3302 6.8421 -1.0579 35 1 3.0411 6.9728 2.4479 36 1 3.3706 7.8728 0.9481 37 1 4.8189 8.4477 3.5173 38 1 6.4763 8.4246 2.8691 39 1 5.1713 9.2106 1.9482 40 1 5.5525 7.2407 -0.1712 41 1 7.9996 6.7205 -2.3777 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700739012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:16 Heat of formation + Delta-G solvation = 30.331605 kcal Electronic energy + Delta-G solvation = -22377.433518 eV Core-core repulsion = 19100.685815 eV Total energy + Delta-G solvation = -3276.747703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.69964 -40.65202 -37.86184 -35.91019 -35.12706 -33.98671 -32.78448 -30.75660 -30.24380 -28.14113 -27.35655 -25.76820 -24.63706 -24.02953 -22.01008 -21.71402 -19.94478 -19.27905 -18.78986 -17.63393 -17.09406 -17.00837 -16.57553 -16.01670 -15.65020 -15.27370 -15.02454 -14.90665 -14.76748 -14.21782 -13.96292 -13.77936 -13.59375 -13.40610 -13.27876 -13.09728 -12.79158 -12.70397 -12.50850 -12.44086 -12.22846 -11.96036 -11.87185 -11.65595 -11.48328 -11.13266 -10.93413 -10.40555 -9.94128 -9.55448 -8.92713 -7.91140 -5.16657 0.54599 1.13353 1.44059 1.46042 1.52018 1.85573 2.23243 2.38518 2.56618 3.35112 3.41998 3.69802 3.84924 3.99624 4.13891 4.25230 4.35696 4.44100 4.46658 4.55756 4.65728 4.69002 4.74842 4.82034 4.83554 4.89698 5.06846 5.09445 5.19670 5.21944 5.27410 5.32722 5.41244 5.46215 5.52291 5.70112 6.15444 6.30878 6.40908 6.86078 7.16957 7.38360 8.12638 8.40981 9.31267 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.004936 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.491229 B = 5671.806531 C = 6610.118581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C 0.038 3.962 4 C -0.202 4.202 5 C -0.033 4.033 6 C 0.589 3.411 7 O -0.576 6.576 8 N -0.584 5.584 9 C 0.091 3.909 10 C 0.115 3.885 11 C 0.151 3.849 12 H 0.020 0.980 13 C -0.150 4.150 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.059 0.941 17 C -0.065 4.065 18 N -0.959 5.959 19 Si 0.962 3.038 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.281 1.281 23 N -0.265 5.265 24 N -0.369 5.369 25 H 0.459 0.541 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.378 0.622 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.575 -11.554 -0.298 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.089 4.089 4 C -0.230 4.230 5 C -0.192 4.192 6 C 0.376 3.624 7 O -0.456 6.456 8 N -0.313 5.313 9 C -0.052 4.052 10 C -0.008 4.008 11 C 0.042 3.958 12 H 0.039 0.961 13 C -0.211 4.211 14 N -0.366 5.366 15 C -0.369 4.369 16 H 0.077 0.923 17 C -0.258 4.258 18 N -0.610 5.610 19 Si 0.792 3.208 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.207 1.207 23 N -0.102 5.102 24 N -0.085 5.085 25 H 0.307 0.693 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.179 0.821 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.211 0.789 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.130 -11.004 -0.543 19.533 hybrid contribution 1.162 -0.488 -0.086 1.264 sum -14.967 -11.492 -0.629 18.881 Atomic orbital electron populations 1.21764 0.93239 1.03264 1.02119 1.20303 0.96866 0.86122 1.05681 1.21906 1.03006 0.97849 0.86112 1.21643 1.08333 0.92172 1.00831 1.21842 1.09644 0.97132 0.90623 1.17363 0.76691 0.82104 0.86208 1.90692 1.56533 1.84194 1.14163 1.47577 1.65509 1.09669 1.08581 1.22056 1.02345 1.03009 0.77795 1.21915 0.95609 0.86321 0.96981 1.20787 0.90631 0.95777 0.88612 0.96139 1.22195 1.00753 0.97960 1.00155 1.42434 1.11609 1.77284 1.05306 1.19422 0.90621 1.33556 0.93311 0.92259 1.25316 1.01691 1.03509 0.95284 1.69764 1.37570 1.55603 0.98041 0.85394 0.81173 0.78038 0.76235 1.21488 1.21662 1.20689 1.73730 1.18573 1.03440 1.14435 1.43580 1.46128 1.07861 1.10943 0.69329 0.92706 0.89847 0.93003 0.88162 0.88172 0.82083 0.94461 0.88087 0.90656 0.89075 0.88475 0.91178 0.94517 0.92520 0.78885 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 71.98 0.71 -0.67 16 2 C -0.05 -0.56 6.49 29.85 0.19 -0.36 16 3 C 0.04 0.78 6.48 41.40 0.27 1.04 16 4 C -0.20 -5.74 10.73 22.41 0.24 -5.49 16 5 C -0.03 -1.17 6.83 42.46 0.29 -0.88 16 6 C 0.59 24.08 7.67 86.75 0.67 24.74 16 7 O -0.58 -26.07 16.55 -3.93 -0.07 -26.13 16 8 N -0.58 -22.64 2.73 -850.36 -2.32 -24.96 16 9 C 0.09 3.34 8.28 127.77 1.06 4.40 16 10 C 0.11 4.19 5.04 86.38 0.44 4.62 16 11 C 0.15 6.57 3.20 44.99 0.14 6.71 16 12 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 13 C -0.15 -5.58 9.49 71.98 0.68 -4.90 16 14 N -0.72 -37.44 4.47 -322.95 -1.44 -38.88 16 15 C -0.24 -13.74 9.93 84.03 0.83 -12.91 16 16 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 17 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 18 N -0.96 -58.04 13.06 21.65 0.28 -57.76 16 19 Si 0.96 47.66 29.55 68.60 2.03 49.69 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 23 N -0.26 -8.18 8.72 -48.17 -0.42 -8.60 16 24 N -0.37 -7.92 6.83 -47.93 -0.33 -8.25 16 25 H 0.46 6.04 8.96 -220.00 -1.97 4.07 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.04 1.68 7.75 -2.39 -0.02 1.67 16 33 H 0.10 3.33 5.27 -2.39 -0.01 3.32 16 34 H 0.07 2.50 7.83 -2.39 -0.02 2.48 16 35 H 0.09 3.13 7.48 -2.39 -0.02 3.11 16 36 H 0.10 3.07 7.86 -2.39 -0.02 3.05 16 37 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.38 20.08 6.39 -92.70 -0.59 19.48 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -75.27 341.73 2.20 -73.07 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -1.52 Total: 28.87 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.99 Total: 12.96 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -4.23 Total: -138.45 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.07 Total: -26.13 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -75.27 2.20 -73.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700739012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.401 kcal (2) G-P(sol) polarization free energy of solvation -75.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds