Wall clock time and date at job start Tue Mar 31 2020 01:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35365 * 127.24927 * 2 1 4 4 N 1.35032 * 107.22382 * 180.09354 * 3 2 1 5 5 C 1.46503 * 124.88190 * 179.89866 * 4 3 2 6 6 N 1.28462 * 110.23400 * 359.63119 * 4 3 2 7 7 C 1.31802 * 110.07609 * 0.22996 * 6 4 3 8 8 C 1.47711 * 126.52257 * 179.97438 * 7 6 4 9 9 O 1.21571 * 120.00147 * 174.88478 * 8 7 6 10 10 N 1.34780 * 119.99924 * 354.88598 * 8 7 6 11 11 C 1.46503 * 119.99569 * 2.54299 * 10 8 7 12 12 C 1.46495 * 120.00262 * 182.54737 * 10 8 7 13 13 C 1.53001 * 109.47108 * 89.99556 * 12 10 8 14 14 H 1.08994 * 109.47310 * 294.99834 * 13 12 10 15 15 C 1.53003 * 109.46938 * 175.00297 * 13 12 10 16 16 N 1.46492 * 109.46836 * 55.00455 * 13 12 10 17 17 C 1.36942 * 119.99888 * 204.99763 * 16 13 12 18 18 H 1.07997 * 120.00109 * 359.97438 * 17 16 13 19 19 C 1.38804 * 120.00109 * 179.97438 * 17 16 13 20 20 N 1.31628 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99986 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47180 * 90.00152 * 21 19 17 23 23 H 1.48510 * 109.47190 * 209.99984 * 21 19 17 24 24 H 1.48500 * 109.47129 * 329.99728 * 21 19 17 25 25 H 1.08997 * 109.46894 * 270.30844 * 1 2 3 26 26 H 1.09000 * 109.46567 * 30.30895 * 1 2 3 27 27 H 1.08998 * 109.47182 * 150.30008 * 1 2 3 28 28 H 1.07998 * 126.38289 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.47236 * 269.72286 * 5 4 3 30 30 H 1.08999 * 109.47117 * 29.72106 * 5 4 3 31 31 H 1.08997 * 109.47420 * 149.71697 * 5 4 3 32 32 H 1.09001 * 109.46610 * 83.86624 * 11 10 8 33 33 H 1.09005 * 109.46957 * 203.85974 * 11 10 8 34 34 H 1.08997 * 109.47483 * 323.86471 * 11 10 8 35 35 H 1.08995 * 109.47175 * 210.00097 * 12 10 8 36 36 H 1.09007 * 109.47118 * 329.99938 * 12 10 8 37 37 H 1.08996 * 109.47247 * 59.99893 * 15 13 12 38 38 H 1.08997 * 109.47210 * 180.02562 * 15 13 12 39 39 H 1.09006 * 109.46741 * 300.00317 * 15 13 12 40 40 H 0.97003 * 120.00426 * 24.99655 * 16 13 12 41 41 H 0.96998 * 120.00319 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6151 -0.0021 5 6 4.7938 1.4574 -0.0050 6 7 3.5998 -0.6695 0.0044 7 6 2.3635 -1.1264 0.0061 8 6 1.9505 -2.5446 0.0125 9 8 0.7737 -2.8346 0.1073 10 7 2.8783 -3.5172 -0.0868 11 6 4.3003 -3.1696 -0.1448 12 6 2.4649 -4.9217 -0.1366 13 6 2.2442 -5.3369 -1.5926 14 1 1.4075 -4.7752 -2.0078 15 6 1.9341 -6.8339 -1.6545 16 7 3.4543 -5.0564 -2.3691 17 6 3.3682 -4.8490 -3.7200 18 1 2.4083 -4.8927 -4.2129 19 6 4.5147 -4.5826 -4.4557 20 7 5.6847 -4.5298 -3.8551 21 14 4.3973 -4.3004 -6.2985 22 1 4.1896 -2.8545 -6.5657 23 1 5.6550 -4.7483 -6.9490 24 1 3.2541 -5.0742 -6.8460 25 1 -0.3633 0.0055 1.0276 26 1 -0.3632 0.8872 -0.5186 27 1 -0.3633 -0.8926 -0.5092 28 1 2.0221 2.1137 -0.0004 29 1 5.0920 1.6615 -1.0333 30 1 4.5790 2.3968 0.5043 31 1 5.6023 0.9405 0.5120 32 1 4.6815 -3.0290 0.8667 33 1 4.8513 -3.9740 -0.6322 34 1 4.4261 -2.2474 -0.7120 35 1 3.2421 -5.5451 0.3053 36 1 1.5371 -5.0474 0.4216 37 1 1.0338 -7.0427 -1.0766 38 1 1.7773 -7.1299 -2.6917 39 1 2.7708 -7.3957 -1.2391 40 1 4.3165 -5.0175 -1.9264 41 1 6.4858 -4.3433 -4.3691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700749560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:53 Heat of formation + Delta-G solvation = 47.123926 kcal Electronic energy + Delta-G solvation = -22808.564791 eV Core-core repulsion = 19532.545258 eV Total energy + Delta-G solvation = -3276.019533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.59705 -40.62896 -37.89965 -35.84897 -34.80458 -33.98707 -32.72511 -30.73756 -29.18468 -28.18550 -27.91460 -26.44364 -25.53419 -23.12996 -21.93833 -21.42490 -20.18122 -19.28220 -18.12836 -17.50590 -17.31448 -16.90772 -16.68118 -16.18229 -15.65433 -15.16088 -14.91430 -14.45385 -14.31749 -14.15468 -13.85511 -13.72932 -13.64828 -13.51521 -13.23563 -13.21391 -13.08970 -12.89524 -12.81714 -12.60105 -12.49725 -12.19315 -11.91517 -11.64644 -11.45420 -11.02975 -10.87834 -10.15076 -9.74895 -9.45462 -8.94148 -7.92141 -5.17719 0.60706 1.20648 1.43533 1.43993 1.52585 1.66683 2.14382 2.44315 2.55740 3.38040 3.41273 3.80599 3.90949 3.99221 4.12494 4.32715 4.38842 4.43219 4.48820 4.50691 4.62484 4.64952 4.70492 4.71541 4.75667 4.89217 4.92320 5.00667 5.05903 5.19937 5.24838 5.26473 5.41797 5.51271 5.57871 5.70957 6.01449 6.30073 6.42073 6.91755 7.22518 7.37472 8.11426 8.39200 9.30645 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.006098 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.249213 B = 4590.368238 C = 5516.615546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.177 4.177 3 C -0.006 4.006 4 N -0.284 5.284 5 C 0.077 3.923 6 N -0.272 5.272 7 C -0.049 4.049 8 C 0.590 3.410 9 O -0.570 6.570 10 N -0.587 5.587 11 C 0.098 3.902 12 C 0.115 3.885 13 C 0.152 3.848 14 H 0.021 0.979 15 C -0.150 4.150 16 N -0.725 5.725 17 C -0.234 4.234 18 H 0.060 0.940 19 C -0.067 4.067 20 N -0.960 5.960 21 Si 0.962 3.038 22 H -0.293 1.293 23 H -0.291 1.291 24 H -0.276 1.276 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.228 0.772 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.055 0.945 40 H 0.377 0.623 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 13.321 11.824 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.188 4.188 3 C -0.149 4.149 4 N -0.072 5.072 5 C -0.061 4.061 6 N -0.109 5.109 7 C -0.207 4.207 8 C 0.378 3.622 9 O -0.450 6.450 10 N -0.317 5.317 11 C -0.045 4.045 12 C -0.008 4.008 13 C 0.042 3.958 14 H 0.040 0.960 15 C -0.210 4.210 16 N -0.367 5.367 17 C -0.366 4.366 18 H 0.078 0.922 19 C -0.260 4.260 20 N -0.611 5.611 21 Si 0.792 3.208 22 H -0.221 1.221 23 H -0.217 1.217 24 H -0.201 1.201 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.244 0.756 29 H 0.109 0.891 30 H 0.153 0.847 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.212 0.788 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.696 12.899 11.714 17.632 hybrid contribution -0.178 0.109 -1.247 1.264 sum -2.874 13.008 10.467 16.942 Atomic orbital electron populations 1.20075 0.87566 1.02572 1.02411 1.20728 0.98345 0.90718 1.08975 1.23205 0.82833 1.01567 1.07262 1.45967 1.08763 1.03463 1.49042 1.22592 0.83465 0.94439 1.05648 1.73726 1.22439 0.95037 1.19729 1.21853 0.90854 0.94782 1.13192 1.17349 0.84912 0.83812 0.76111 1.90662 1.17776 1.83296 1.53234 1.47580 1.07600 1.06319 1.70184 1.21945 0.79132 1.02201 1.01232 1.21856 1.02016 0.80379 0.96536 1.20798 0.89200 0.94651 0.91116 0.96047 1.22190 1.01171 0.96735 1.00915 1.42530 1.04707 1.85036 1.04472 1.19456 0.92934 1.38502 0.85690 0.92183 1.25327 0.95281 1.03893 1.01481 1.69769 0.97681 1.57989 1.35670 0.85312 0.76668 0.77345 0.81485 1.22084 1.21723 1.20116 0.90980 0.89364 0.93356 0.75580 0.89050 0.84668 0.88386 0.91776 0.91984 0.90370 0.88794 0.89018 0.91172 0.94428 0.92593 0.78833 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.81 9.89 71.24 0.70 -1.10 16 2 C -0.18 -5.31 6.25 -19.72 -0.12 -5.43 16 3 C -0.01 -0.12 11.40 83.54 0.95 0.83 16 4 N -0.28 -6.77 3.70 -369.46 -1.37 -8.14 16 5 C 0.08 0.95 11.31 127.77 1.44 2.39 16 6 N -0.27 -9.01 8.50 -48.18 -0.41 -9.42 16 7 C -0.05 -1.82 6.83 42.46 0.29 -1.53 16 8 C 0.59 24.63 7.68 86.75 0.67 25.30 16 9 O -0.57 -25.49 14.74 -3.94 -0.06 -25.55 16 10 N -0.59 -23.34 2.73 -850.34 -2.32 -25.66 16 11 C 0.10 3.73 9.12 127.77 1.17 4.90 16 12 C 0.12 4.28 5.04 86.38 0.44 4.72 16 13 C 0.15 6.59 3.20 44.99 0.14 6.73 16 14 H 0.02 1.05 8.08 -2.39 -0.02 1.03 16 15 C -0.15 -5.57 9.49 71.98 0.68 -4.88 16 16 N -0.72 -37.37 4.57 -322.96 -1.47 -38.84 16 17 C -0.23 -13.48 9.93 84.03 0.83 -12.65 16 18 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 19 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 20 N -0.96 -58.00 13.06 21.65 0.28 -57.71 16 21 Si 0.96 47.52 29.55 68.60 2.03 49.55 16 22 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.59 6.83 -2.39 -0.02 1.57 16 28 H 0.23 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.14 0.52 8.13 -2.39 -0.02 0.50 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 2.57 5.79 -2.38 -0.01 2.56 16 34 H 0.08 3.24 5.40 -2.39 -0.01 3.23 16 35 H 0.09 3.07 8.07 -2.39 -0.02 3.05 16 36 H 0.09 3.23 7.39 -2.38 -0.02 3.21 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.38 20.05 5.42 -92.71 -0.50 19.54 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -76.90 338.23 4.87 -72.03 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.53 Total: 27.93 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 7.66 Total: 15.82 kcal Atomic # 7 Polarization: -134.49 SS G_CDS: -5.29 Total: -139.78 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.55 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -76.90 4.87 -72.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700749560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.151 kcal (2) G-P(sol) polarization free energy of solvation -76.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds