Wall clock time and date at job start Tue Mar 31 2020 01:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39665 * 127.32048 * 2 1 4 4 N 1.30862 * 107.86173 * 180.27227 * 3 2 1 5 5 N 1.28448 * 110.92741 * 359.77063 * 4 3 2 6 6 C 1.46498 * 125.18908 * 180.02562 * 5 4 3 7 7 C 1.36596 * 109.61444 * 0.02562 * 5 4 3 8 8 C 1.47168 * 126.87908 * 179.97438 * 7 5 4 9 9 O 1.21621 * 119.99993 * 99.62114 * 8 7 5 10 10 N 1.34782 * 119.99665 * 279.61364 * 8 7 5 11 11 C 1.46495 * 120.00216 * 354.82966 * 10 8 7 12 12 C 1.46497 * 119.99854 * 174.81984 * 10 8 7 13 13 C 1.53001 * 109.46906 * 90.00008 * 12 10 8 14 14 H 1.08991 * 109.47961 * 295.00196 * 13 12 10 15 15 C 1.53001 * 109.47431 * 174.99840 * 13 12 10 16 16 N 1.46506 * 109.47041 * 55.00420 * 13 12 10 17 17 C 1.36929 * 120.00043 * 205.00052 * 16 13 12 18 18 H 1.08003 * 120.00240 * 359.97438 * 17 16 13 19 19 C 1.38815 * 120.00031 * 179.97438 * 17 16 13 20 20 N 1.31621 * 119.99675 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00333 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46864 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47510 * 120.00097 * 21 19 17 24 24 H 1.48506 * 109.47377 * 240.00189 * 21 19 17 25 25 H 1.08993 * 109.47077 * 270.10340 * 1 2 3 26 26 H 1.08997 * 109.47169 * 30.10341 * 1 2 3 27 27 H 1.09000 * 109.46924 * 150.10346 * 1 2 3 28 28 H 1.08000 * 126.07062 * 0.05567 * 3 2 1 29 29 H 1.08998 * 109.47392 * 264.94431 * 6 5 4 30 30 H 1.08997 * 109.47772 * 24.95433 * 6 5 4 31 31 H 1.09002 * 109.46771 * 144.94879 * 6 5 4 32 32 H 1.09000 * 109.46683 * 275.24326 * 11 10 8 33 33 H 1.08994 * 109.47438 * 35.24014 * 11 10 8 34 34 H 1.09001 * 109.47222 * 155.24771 * 11 10 8 35 35 H 1.09009 * 109.47318 * 330.00885 * 12 10 8 36 36 H 1.08991 * 109.47889 * 210.00325 * 12 10 8 37 37 H 1.09002 * 109.46571 * 60.00274 * 15 13 12 38 38 H 1.08998 * 109.47584 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.47398 * 300.00960 * 15 13 12 40 40 H 0.96998 * 119.99768 * 24.99667 * 16 13 12 41 41 H 0.96999 * 119.99678 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6748 -0.0059 5 7 3.6206 -0.6093 -0.0049 6 6 4.8391 -1.4225 -0.0099 7 6 2.3461 -1.1007 0.0014 8 6 1.9455 -2.5168 0.0040 9 8 1.6156 -3.0535 1.0443 10 7 1.9441 -3.2188 -1.1465 11 6 2.2311 -2.5457 -2.4157 12 6 1.6557 -4.6550 -1.1280 13 6 0.1504 -4.8750 -1.2906 14 1 -0.3723 -4.4648 -0.4266 15 6 -0.1375 -6.3739 -1.3963 16 7 -0.3130 -4.2018 -2.5065 17 6 -1.6203 -3.8096 -2.6161 18 1 -2.3100 -3.9967 -1.8063 19 6 -2.0592 -3.1713 -3.7680 20 7 -1.2186 -2.9427 -4.7547 21 14 -3.8428 -2.6367 -3.9179 22 1 -4.5762 -3.0077 -2.6811 23 1 -3.9043 -1.1653 -4.1080 24 1 -4.4660 -3.3130 -5.0840 25 1 -0.3633 0.0019 1.0276 26 1 -0.3633 0.8890 -0.5154 27 1 -0.3633 -0.8909 -0.5122 28 1 2.0451 2.1456 0.0008 29 1 5.0863 -1.7005 -1.0345 30 1 5.6606 -0.8490 0.4193 31 1 4.6770 -2.3235 0.5819 32 1 1.3163 -2.0987 -2.8048 33 1 2.9758 -1.7665 -2.2534 34 1 2.6147 -3.2712 -3.1331 35 1 1.9845 -5.0794 -0.1792 36 1 2.1847 -5.1425 -1.9468 37 1 0.2072 -6.8748 -0.4916 38 1 -1.2099 -6.5307 -1.5126 39 1 0.3851 -6.7843 -2.2603 40 1 0.3063 -4.0340 -3.2339 41 1 -1.5252 -2.4964 -5.5595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700767369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:06 Heat of formation + Delta-G solvation = 39.041801 kcal Electronic energy + Delta-G solvation = -23149.800433 eV Core-core repulsion = 19873.430433 eV Total energy + Delta-G solvation = -3276.370000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -43.54253 -40.75798 -37.92025 -35.90282 -34.95289 -34.01944 -32.77728 -30.70868 -29.51171 -28.26017 -27.22213 -26.89295 -25.65455 -23.31809 -21.90195 -21.64084 -20.07747 -19.26314 -18.64448 -17.78160 -16.98100 -16.88110 -16.49475 -16.25241 -15.64734 -15.24627 -15.06665 -14.56635 -14.33196 -14.25202 -13.94793 -13.84267 -13.68355 -13.49690 -13.41445 -13.31667 -13.13119 -13.06794 -12.82214 -12.71331 -12.50319 -12.15743 -11.87099 -11.70132 -11.62778 -11.28440 -10.94255 -10.13752 -9.73063 -9.66434 -8.91899 -7.89918 -5.14621 0.59865 1.07705 1.46211 1.48559 1.56287 1.61436 1.67477 2.14547 2.58454 3.30778 3.44692 3.54193 3.89597 4.07642 4.14317 4.17113 4.21038 4.25425 4.36995 4.43130 4.50573 4.54979 4.63283 4.64868 4.71791 4.77456 4.81818 5.01476 5.03691 5.09478 5.16369 5.27904 5.33670 5.55386 5.56325 5.62476 5.77897 6.20666 6.33124 6.90808 7.03117 7.41107 8.13699 8.42042 9.32595 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016716 B = 0.006272 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.634079 B = 4463.128066 C = 5345.506911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.171 4.171 3 C 0.005 3.995 4 N -0.294 5.294 5 N -0.274 5.274 6 C 0.078 3.922 7 C -0.041 4.041 8 C 0.594 3.406 9 O -0.564 6.564 10 N -0.578 5.578 11 C 0.095 3.905 12 C 0.115 3.885 13 C 0.150 3.850 14 H 0.022 0.978 15 C -0.152 4.152 16 N -0.723 5.723 17 C -0.229 4.229 18 H 0.059 0.941 19 C -0.062 4.062 20 N -0.958 5.958 21 Si 0.955 3.045 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.295 1.295 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.036 0.964 28 H 0.214 0.786 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.378 0.622 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.912 2.459 7.202 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.181 4.181 3 C -0.172 4.172 4 N -0.125 5.125 5 N -0.063 5.063 6 C -0.061 4.061 7 C -0.169 4.169 8 C 0.379 3.621 9 O -0.442 6.442 10 N -0.308 5.308 11 C -0.048 4.048 12 C -0.008 4.008 13 C 0.041 3.959 14 H 0.040 0.960 15 C -0.212 4.212 16 N -0.365 5.365 17 C -0.361 4.361 18 H 0.077 0.923 19 C -0.255 4.255 20 N -0.609 5.609 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.221 1.221 24 H -0.222 1.222 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.055 0.945 28 H 0.230 0.770 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.212 0.788 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.854 2.428 7.775 16.071 hybrid contribution -2.026 0.095 -0.623 2.121 sum 11.828 2.523 7.152 14.051 Atomic orbital electron populations 1.20072 0.88462 1.02531 1.02141 1.20944 0.97285 0.91471 1.08450 1.23845 0.87111 1.00751 1.05511 1.73076 1.24641 0.93495 1.21275 1.45798 1.05612 1.03710 1.51174 1.22496 0.83085 0.94757 1.05784 1.21252 0.87173 0.94301 1.14187 1.17182 0.77558 0.83771 0.83579 1.90769 1.49886 1.70468 1.33127 1.47651 1.66813 1.09674 1.06657 1.21747 1.00634 0.98046 0.84343 1.21985 0.95654 0.79081 1.04066 1.20787 0.93461 0.92629 0.89028 0.95986 1.22208 1.00871 0.96686 1.01437 1.42420 1.08180 1.69565 1.16299 1.19418 0.87904 1.29194 0.99582 0.92281 1.25230 1.00692 1.02784 0.96816 1.69749 1.34729 1.49311 1.07083 0.85339 0.81636 0.77303 0.77118 1.20135 1.22096 1.22205 0.90907 0.89278 0.94502 0.76967 0.87841 0.86146 0.89006 0.93848 0.91357 0.88867 0.88837 0.87766 0.91308 0.94644 0.92446 0.78839 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.38 10.28 71.24 0.73 -1.65 16 2 C -0.17 -5.49 6.29 -19.48 -0.12 -5.61 16 3 C 0.00 0.13 12.00 85.18 1.02 1.15 16 4 N -0.29 -8.18 11.90 -57.15 -0.68 -8.86 16 5 N -0.27 -7.40 3.53 -356.03 -1.26 -8.66 16 6 C 0.08 1.34 11.10 127.77 1.42 2.76 16 7 C -0.04 -1.32 4.95 40.79 0.20 -1.12 16 8 C 0.59 21.23 6.80 86.59 0.59 21.82 16 9 O -0.56 -23.46 16.74 -4.10 -0.07 -23.53 16 10 N -0.58 -18.90 2.73 -850.99 -2.32 -21.22 16 11 C 0.10 2.95 8.84 127.77 1.13 4.08 16 12 C 0.11 3.56 5.03 86.38 0.43 3.99 16 13 C 0.15 5.87 3.20 44.99 0.14 6.02 16 14 H 0.02 1.00 8.08 -2.39 -0.02 0.98 16 15 C -0.15 -5.13 9.49 71.98 0.68 -4.44 16 16 N -0.72 -34.14 4.47 -322.94 -1.44 -35.58 16 17 C -0.23 -12.41 9.93 84.04 0.83 -11.58 16 18 H 0.06 3.26 7.83 -2.91 -0.02 3.24 16 19 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 20 N -0.96 -55.24 13.06 21.65 0.28 -54.95 16 21 Si 0.96 45.80 29.55 68.60 2.03 47.83 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.04 1.44 8.07 -2.39 -0.02 1.42 16 28 H 0.21 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.55 7.93 -2.39 -0.02 1.54 16 32 H 0.04 1.74 7.72 -2.39 -0.02 1.72 16 33 H 0.07 1.87 6.82 -2.39 -0.02 1.85 16 34 H 0.09 2.49 7.83 -2.39 -0.02 2.47 16 35 H 0.09 2.70 7.50 -2.38 -0.02 2.69 16 36 H 0.10 2.68 7.86 -2.39 -0.02 2.66 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.38 18.34 6.38 -92.71 -0.59 17.74 16 41 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -69.80 346.10 4.50 -65.30 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.43 Total: 27.26 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 7.53 Total: 12.42 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -5.42 Total: -129.27 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.07 Total: -23.53 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.80 4.50 -65.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700767369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.338 kcal (2) G-P(sol) polarization free energy of solvation -69.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds