Wall clock time and date at job start Tue Mar 31 2020 01:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39669 * 127.31809 * 2 1 4 4 N 1.30863 * 107.85943 * 180.27305 * 3 2 1 5 5 N 1.28446 * 110.92625 * 359.73390 * 4 3 2 6 6 C 1.46498 * 125.18956 * 180.02562 * 5 4 3 7 7 C 1.36593 * 109.62112 * 0.02562 * 5 4 3 8 8 C 1.47158 * 126.88470 * 179.97438 * 7 5 4 9 9 O 1.21632 * 119.99893 * 259.67880 * 8 7 5 10 10 N 1.34774 * 120.00182 * 79.40847 * 8 7 5 11 11 C 1.46504 * 119.99966 * 5.03003 * 10 8 7 12 12 C 1.46497 * 120.00353 * 185.02524 * 10 8 7 13 13 C 1.53003 * 109.47000 * 89.99840 * 12 10 8 14 14 H 1.09004 * 109.46944 * 65.00253 * 13 12 10 15 15 C 1.52997 * 109.47271 * 185.00236 * 13 12 10 16 16 N 1.46497 * 109.47268 * 305.00637 * 13 12 10 17 17 C 1.36931 * 120.00418 * 155.00086 * 16 13 12 18 18 H 1.08007 * 119.99613 * 359.97438 * 17 16 13 19 19 C 1.38809 * 120.00107 * 179.97438 * 17 16 13 20 20 N 1.31619 * 119.99883 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00345 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47419 * 89.99479 * 21 19 17 23 23 H 1.48503 * 109.47384 * 209.99955 * 21 19 17 24 24 H 1.48506 * 109.46863 * 329.99431 * 21 19 17 25 25 H 1.09000 * 109.47296 * 270.16725 * 1 2 3 26 26 H 1.09004 * 109.47499 * 30.17158 * 1 2 3 27 27 H 1.09007 * 109.46992 * 150.16874 * 1 2 3 28 28 H 1.08005 * 126.07216 * 0.04007 * 3 2 1 29 29 H 1.09002 * 109.47131 * 275.05728 * 6 5 4 30 30 H 1.09007 * 109.47289 * 35.05425 * 6 5 4 31 31 H 1.08996 * 109.47512 * 155.05005 * 6 5 4 32 32 H 1.08994 * 109.47369 * 84.74715 * 11 10 8 33 33 H 1.08999 * 109.47399 * 204.75364 * 11 10 8 34 34 H 1.09000 * 109.46833 * 324.74801 * 11 10 8 35 35 H 1.09003 * 109.47260 * 209.99811 * 12 10 8 36 36 H 1.09003 * 109.46912 * 330.00248 * 12 10 8 37 37 H 1.09000 * 109.47478 * 180.02562 * 15 13 12 38 38 H 1.09008 * 109.47273 * 300.00321 * 15 13 12 39 39 H 1.08996 * 109.47207 * 59.99881 * 15 13 12 40 40 H 0.96997 * 119.99697 * 334.98985 * 16 13 12 41 41 H 0.96998 * 120.00018 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5876 0.6748 -0.0059 5 7 3.6205 -0.6092 -0.0042 6 6 4.8390 -1.4225 -0.0090 7 6 2.3461 -1.1007 0.0028 8 6 1.9456 -2.5167 0.0063 9 8 1.5932 -3.0516 -1.0277 10 7 1.9743 -3.2223 1.1542 11 6 2.2977 -2.5538 2.4171 12 6 1.6822 -4.6578 1.1392 13 6 2.9796 -5.4401 0.9251 14 1 3.6400 -5.2891 1.7791 15 6 2.6597 -6.9297 0.7848 16 7 3.6406 -4.9656 -0.2931 17 6 4.9948 -5.1085 -0.4374 18 1 5.5756 -5.5707 0.3472 19 6 5.6209 -4.6594 -1.5920 20 7 6.9227 -4.7963 -1.7304 21 14 4.6165 -3.8595 -2.9486 22 1 4.5462 -2.3948 -2.7145 23 1 5.2604 -4.1207 -4.2610 24 1 3.2442 -4.4273 -2.9488 25 1 -0.3634 0.0030 1.0276 26 1 -0.3634 0.8884 -0.5165 27 1 -0.3633 -0.8916 -0.5112 28 1 2.0450 2.1457 0.0006 29 1 5.1865 -1.5504 -1.0342 30 1 5.6112 -0.9236 0.5768 31 1 4.6262 -2.3985 0.4270 32 1 1.3951 -2.1060 2.8326 33 1 2.6994 -3.2823 3.1214 34 1 3.0394 -1.7758 2.2367 35 1 1.2358 -4.9477 2.0904 36 1 0.9869 -4.8786 0.3292 37 1 3.5840 -7.4870 0.6328 38 1 2.1679 -7.2827 1.6913 39 1 1.9994 -7.0806 -0.0691 40 1 3.1189 -4.5504 -0.9976 41 1 7.3603 -4.4822 -2.5370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700767371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:10 Heat of formation + Delta-G solvation = 40.731276 kcal Electronic energy + Delta-G solvation = -23852.265285 eV Core-core repulsion = 20575.968545 eV Total energy + Delta-G solvation = -3276.296739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.59121 -40.85422 -37.82563 -36.18093 -34.98722 -34.12573 -32.84521 -31.24895 -29.55711 -28.33975 -27.24172 -26.81800 -25.44348 -23.39916 -21.92282 -21.49379 -20.26685 -19.74767 -18.62383 -17.86296 -17.05759 -16.90937 -16.65262 -16.35470 -15.79078 -15.18674 -14.92080 -14.63759 -14.37775 -14.32591 -14.26494 -14.14292 -13.69698 -13.60245 -13.54282 -13.39364 -13.18302 -13.10065 -12.85079 -12.74835 -12.41958 -12.26397 -11.87432 -11.80010 -11.66613 -11.29457 -11.04339 -10.23020 -9.73095 -9.67784 -9.29312 -8.07953 -5.34047 0.59160 0.98843 1.17563 1.26171 1.39213 1.67307 1.75620 1.99840 2.36343 3.24768 3.32447 3.54595 3.66343 4.04260 4.08818 4.10534 4.16700 4.18200 4.36599 4.41873 4.53382 4.55201 4.61251 4.65198 4.70059 4.82547 4.85463 4.86317 5.02838 5.06958 5.13105 5.23611 5.37931 5.57340 5.61972 5.72139 5.79657 6.16681 6.20004 6.92503 7.04869 7.08416 7.89698 8.05917 9.13599 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.008852 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.860850 B = 3162.534917 C = 4079.038934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.167 4.167 3 C 0.008 3.992 4 N -0.310 5.310 5 N -0.277 5.277 6 C 0.088 3.912 7 C -0.048 4.048 8 C 0.595 3.405 9 O -0.566 6.566 10 N -0.590 5.590 11 C 0.079 3.921 12 C 0.109 3.891 13 C 0.148 3.852 14 H 0.062 0.938 15 C -0.155 4.155 16 N -0.758 5.758 17 C -0.202 4.202 18 H 0.074 0.926 19 C -0.034 4.034 20 N -0.970 5.970 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.303 1.303 24 H -0.278 1.278 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.223 0.777 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.135 0.865 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.367 0.633 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.566 8.313 12.313 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.177 4.177 3 C -0.170 4.170 4 N -0.140 5.140 5 N -0.065 5.065 6 C -0.052 4.052 7 C -0.177 4.177 8 C 0.381 3.619 9 O -0.444 6.444 10 N -0.320 5.320 11 C -0.063 4.063 12 C -0.014 4.014 13 C 0.039 3.961 14 H 0.080 0.920 15 C -0.215 4.215 16 N -0.404 5.404 17 C -0.334 4.334 18 H 0.092 0.908 19 C -0.227 4.227 20 N -0.622 5.622 21 Si 0.742 3.258 22 H -0.214 1.214 23 H -0.231 1.231 24 H -0.204 1.204 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.239 0.761 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.202 0.798 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.288 8.213 11.854 19.610 hybrid contribution -0.486 -0.028 -1.736 1.803 sum -13.774 8.185 10.118 18.950 Atomic orbital electron populations 1.20178 0.86236 1.03024 1.03406 1.21116 0.98226 0.89997 1.08408 1.24059 0.86774 1.01220 1.04901 1.73104 1.25989 0.93311 1.21603 1.45647 1.05695 1.03813 1.51338 1.22300 0.83979 0.94990 1.03930 1.21553 0.86649 0.95143 1.14320 1.17209 0.77184 0.83778 0.83769 1.90777 1.49380 1.70784 1.33412 1.47715 1.67422 1.09428 1.07459 1.21989 1.01710 0.98366 0.84203 1.22082 0.96807 0.77583 1.04899 1.21013 0.93085 0.93043 0.88937 0.92012 1.22220 1.00714 0.96872 1.01724 1.43254 1.04624 1.72963 1.19528 1.19062 0.83616 1.29594 1.01080 0.90850 1.24867 0.95496 1.03328 0.99004 1.69770 1.08633 1.55064 1.28734 0.86214 0.78936 0.79160 0.81472 1.21376 1.23100 1.20445 0.89167 0.88776 0.93552 0.76082 0.92391 0.86626 0.88230 0.89703 0.87992 0.93284 0.84763 0.91196 0.94502 0.89569 0.94127 0.79789 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 10.28 71.24 0.73 -0.73 16 2 C -0.17 -4.73 6.30 -19.48 -0.12 -4.85 16 3 C 0.01 0.20 12.00 85.18 1.02 1.22 16 4 N -0.31 -10.39 11.90 -57.14 -0.68 -11.07 16 5 N -0.28 -10.14 3.48 -356.03 -1.24 -11.38 16 6 C 0.09 3.40 11.21 127.77 1.43 4.83 16 7 C -0.05 -1.70 4.97 40.79 0.20 -1.49 16 8 C 0.60 22.06 5.79 86.59 0.50 22.56 16 9 O -0.57 -25.70 14.70 -4.13 -0.06 -25.76 16 10 N -0.59 -17.16 2.77 -850.97 -2.36 -19.52 16 11 C 0.08 1.65 10.23 127.77 1.31 2.95 16 12 C 0.11 2.95 5.13 86.38 0.44 3.39 16 13 C 0.15 5.03 3.20 44.99 0.14 5.18 16 14 H 0.06 2.04 8.08 -2.38 -0.02 2.03 16 15 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 16 N -0.76 -35.04 4.33 -322.94 -1.40 -36.44 16 17 C -0.20 -10.97 10.27 84.03 0.86 -10.10 16 18 H 0.07 4.22 8.06 -2.91 -0.02 4.20 16 19 C -0.03 -2.02 5.50 84.86 0.47 -1.55 16 20 N -0.97 -60.71 13.97 21.65 0.30 -60.41 16 21 Si 0.91 50.02 27.14 68.60 1.86 51.88 16 22 H -0.29 -15.67 5.80 99.48 0.58 -15.10 16 23 H -0.30 -16.93 7.11 99.48 0.71 -16.23 16 24 H -0.28 -15.64 6.52 99.48 0.65 -14.99 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.05 1.13 8.07 -2.38 -0.02 1.11 16 28 H 0.22 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.06 2.59 6.12 -2.39 -0.01 2.58 16 30 H 0.12 3.75 8.14 -2.38 -0.02 3.73 16 31 H 0.10 4.07 7.51 -2.39 -0.02 4.05 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.64 8.03 -2.39 -0.02 1.62 16 34 H 0.05 1.19 6.79 -2.39 -0.02 1.18 16 35 H 0.13 2.26 8.07 -2.39 -0.02 2.24 16 36 H 0.07 2.15 7.36 -2.39 -0.02 2.14 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.37 18.31 3.09 -92.71 -0.29 18.02 16 41 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.33 336.62 4.65 -71.68 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.55 Total: 23.70 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 7.67 Total: 17.32 kcal Atomic # 7 Polarization: -133.44 SS G_CDS: -5.38 Total: -138.82 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.76 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 1.86 Total: 51.88 kcal Total: -76.33 4.65 -71.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700767371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.411 kcal (2) G-P(sol) polarization free energy of solvation -76.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds